PMC:7376845 / 13979-14838
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T87 | 2-9 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T88 | 622-632 | Body_part | denotes | amino-acid | http://purl.org/sig/ont/fma/fma82739 |
| T89 | 725-732 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T90 | 810-817 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T91 | 837-847 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 341 | 34-42 | Species | denotes | SARS-CoV | Tax:694009 |
| 342 | 46-56 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 343 | 113-118 | Species | denotes | human | Tax:9606 |
| 344 | 131-144 | Species | denotes | coronaviruses | Tax:11118 |
| 345 | 476-484 | Species | denotes | SARS-CoV | Tax:694009 |
| 346 | 145-149 | Species | denotes | 229E | Tax:11137 |
| 347 | 151-155 | Species | denotes | NL63 | Tax:277944 |
| 348 | 157-161 | Species | denotes | OC43 | Tax:31631 |
| 349 | 166-170 | Species | denotes | HKU1 | Tax:290028 |
| 350 | 69-101 | Disease | denotes | Middle East respiratory syndrome | MESH:D018352 |
| 351 | 103-107 | Disease | denotes | MERS | MESH:D018352 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T123 | 34-42 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T124 | 34-38 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T125 | 46-54 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T126 | 46-50 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T127 | 119-130 | Disease | denotes | common-cold | http://purl.obolibrary.org/obo/MONDO_0005709 |
| T128 | 476-484 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T129 | 476-480 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T165 | 113-118 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T166 | 250-251 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T125 | 2-9 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T126 | 582-586 | Chemical | denotes | MEGA | http://purl.obolibrary.org/obo/CHEBI_6617 |
| T127 | 622-627 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T128 | 628-632 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T129 | 725-732 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T130 | 810-817 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T131 | 837-847 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T132 | 837-842 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T133 | 843-847 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T100 | 0-249 | Sentence | denotes | S protein reference sequences for SARS-CoV-1, SARS-CoV-2, batRaTG13, Middle East respiratory syndrome (MERS) and human common-cold coronaviruses 229E, NL63, OC43 and HKU1 were downloaded from the National Center for Biotechnology Information (NCBI). |
| T101 | 250-531 | Sentence | denotes | A multiple sequence alignment was created with multiple alignment using fast Fourier transform (MAFFT) using the slow but accurate L-INS-I parameter settings [24] and the alignment curated, cut to the target region 1029–1192 (SARS-CoV-1 numbering) and visualised with Jalview [25]. |
| T102 | 532-859 | Sentence | denotes | We used Molecular Evolutionary Genetics Analysis (MEGA) X [26] to calculate the number of amino-acid differences for all sequence pairs in the alignment of the mAb target region and the full S protein normalised by the length of the aligned sequence of the respective reference protein to obtain per cent amino acid identities. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32700671-29506019-29327479 | 409-411 | 29506019 | denotes | 24 |
| 32700671-19151095-29327480 | 527-529 | 19151095 | denotes | 25 |
| 32700671-29722887-29327481 | 591-593 | 29722887 | denotes | 26 |
MyTest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32700671-29506019-29327479 | 409-411 | 29506019 | denotes | 24 |
| 32700671-19151095-29327480 | 527-529 | 19151095 | denotes | 25 |
| 32700671-29722887-29327481 | 591-593 | 29722887 | denotes | 26 |