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PMC:7373848 / 889-5081 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T8 171-176 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T9 236-243 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T10 262-266 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T11 379-387 Body_part denotes arteries http://purl.org/sig/ont/fma/fma63812
T12 392-402 Body_part denotes arterioles http://purl.org/sig/ont/fma/fma63182
T13 422-427 Body_part denotes veins http://purl.org/sig/ont/fma/fma63814
T14 432-439 Body_part denotes venules http://purl.org/sig/ont/fma/fma63130
T15 460-471 Body_part denotes capillaries http://purl.org/sig/ont/fma/fma63194
T16 505-515 Body_part denotes arterioles http://purl.org/sig/ont/fma/fma63182
T17 520-527 Body_part denotes venules http://purl.org/sig/ont/fma/fma63130
T18 547-560 Body_part denotes blood vessels http://purl.org/sig/ont/fma/fma63183
T19 547-552 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T20 608-619 Body_part denotes capillaries http://purl.org/sig/ont/fma/fma63194
T21 645-650 Body_part denotes aorta http://purl.org/sig/ont/fma/fma3734
T22 716-721 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T23 750-758 Body_part denotes arteries http://purl.org/sig/ont/fma/fma63812
T24 760-770 Body_part denotes arterioles http://purl.org/sig/ont/fma/fma63182
T25 773-784 Body_part denotes capillaries http://purl.org/sig/ont/fma/fma63194
T26 792-797 Body_part denotes veins http://purl.org/sig/ont/fma/fma63814
T27 799-806 Body_part denotes venules http://purl.org/sig/ont/fma/fma63130
T28 808-817 Body_part denotes sinusoids http://purl.org/sig/ont/fma/fma63131
T29 829-834 Body_part denotes veins http://purl.org/sig/ont/fma/fma63814
T30 875-880 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T31 950-960 Body_part denotes arterioles http://purl.org/sig/ont/fma/fma63182
T32 962-973 Body_part denotes capillaries http://purl.org/sig/ont/fma/fma63194
T33 978-985 Body_part denotes venules http://purl.org/sig/ont/fma/fma63130
T34 1038-1044 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T35 1061-1078 Body_part denotes Endothelial cells http://purl.org/sig/ont/fma/fma66772
T36 1073-1078 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T37 1317-1322 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T38 1404-1410 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T39 1438-1442 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T40 1463-1471 Body_part denotes histones http://purl.org/sig/ont/fma/fma74413
T41 1473-1483 Body_part denotes chemokines http://purl.org/sig/ont/fma/fma241981
T42 1485-1494 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T43 1517-1525 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T44 1553-1569 Body_part denotes endothelial cell http://purl.org/sig/ont/fma/fma66772
T45 1565-1569 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T46 1727-1743 Body_part denotes endothelial cell http://purl.org/sig/ont/fma/fma66772
T47 1739-1743 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T48 1768-1776 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T49 1831-1852 Body_part denotes von Willebrand factor http://purl.org/sig/ont/fma/fma81101
T50 1863-1869 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T51 1954-1970 Body_part denotes endothelial cell http://purl.org/sig/ont/fma/fma66772
T52 1966-1970 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T53 1983-1987 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T54 2001-2019 Body_part denotes basement membranes http://purl.org/sig/ont/fma/fma63872
T55 2036-2055 Body_part denotes smooth muscle cells http://purl.org/sig/ont/fma/fma14072
T56 2050-2055 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T57 2254-2274 Body_part denotes extracellular matrix http://purl.org/sig/ont/fma/fma9672
T58 2315-2334 Body_part denotes smooth muscle cells http://purl.org/sig/ont/fma/fma14072
T59 2329-2334 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T60 2336-2345 Body_part denotes pericytes http://purl.org/sig/ont/fma/fma63174
T61 2350-2367 Body_part denotes mesenchymal cells http://purl.org/sig/ont/fma/fma70546
T62 2362-2367 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T63 2500-2511 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T64 2727-2744 Body_part denotes cells of clusters http://purl.org/sig/ont/fma/fma62807
T65 2727-2732 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T66 2909-2914 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T67 2922-2926 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T68 3083-3088 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T69 3096-3100 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T70 3260-3265 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T71 3273-3277 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T72 3308-3313 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T73 3475-3480 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T74 3603-3608 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T75 3616-3620 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T76 3966-3971 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T77 4030-4043 Body_part denotes cell clusters http://purl.org/sig/ont/fma/fma62807
T78 4030-4034 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T79 4071-4075 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T4 67-82 Body_part denotes vascular system http://purl.obolibrary.org/obo/UBERON_0007798
T5 87-102 Body_part denotes vascular system http://purl.obolibrary.org/obo/UBERON_0007798
T6 127-145 Body_part denotes circulatory system http://purl.obolibrary.org/obo/UBERON_0001009
T7 171-176 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T8 248-254 Body_part denotes organs http://purl.obolibrary.org/obo/UBERON_0000062
T9 359-377 Body_part denotes circulatory system http://purl.obolibrary.org/obo/UBERON_0001009
T10 392-402 Body_part denotes arterioles http://purl.obolibrary.org/obo/UBERON_0001980
T11 404-419 Body_part denotes arterial system http://purl.obolibrary.org/obo/UBERON_0004572
T12 441-454 Body_part denotes venous system http://purl.obolibrary.org/obo/UBERON_0004582
T13 505-515 Body_part denotes arterioles http://purl.obolibrary.org/obo/UBERON_0001980
T14 547-560 Body_part denotes blood vessels http://purl.obolibrary.org/obo/UBERON_0001981
T15 547-552 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T16 553-560 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T17 645-650 Body_part denotes aorta http://purl.obolibrary.org/obo/UBERON_0000947
T18 681-699 Body_part denotes circulatory system http://purl.obolibrary.org/obo/UBERON_0001009
T19 716-721 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T20 760-770 Body_part denotes arterioles http://purl.obolibrary.org/obo/UBERON_0001980
T21 808-817 Body_part denotes sinusoids http://purl.obolibrary.org/obo/UBERON_0003909
T22 875-880 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T23 915-921 Body_part denotes organs http://purl.obolibrary.org/obo/UBERON_0000062
T24 950-960 Body_part denotes arterioles http://purl.obolibrary.org/obo/UBERON_0001980
T25 1038-1044 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T26 1317-1322 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T27 1404-1410 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T28 1863-1869 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T29 2379-2385 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T30 2392-2398 Body_part denotes Vessel http://purl.obolibrary.org/obo/UBERON_0000055
T31 2922-2926 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T32 3096-3100 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T33 3195-3200 Body_part denotes Scale http://purl.obolibrary.org/obo/UBERON_0002542
T34 3273-3277 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T35 3616-3620 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T36 3751-3756 Body_part denotes Scale http://purl.obolibrary.org/obo/UBERON_0002542
T37 4030-4043 Body_part denotes cell clusters http://purl.obolibrary.org/obo/UBERON_0034922
T38 4071-4075 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
19 30-38 Disease denotes COVID-19 MESH:C000657245
21 178-184 Chemical denotes oxygen MESH:D010100
24 1250-1259 Disease denotes infection MESH:D007239
25 1298-1305 Disease denotes hypoxia MESH:D000860
44 2904-2907 Gene denotes Pf4 Gene:5196
45 3167-3170 Gene denotes Pf4 Gene:5196
46 3462-3466 Gene denotes Ccl2 Gene:6347
47 3644-3648 Gene denotes Ccl2 Gene:6347
48 3714-3717 Gene denotes Pf4 Gene:5196
49 3470-3473 Gene denotes Pf4 Gene:5196
50 2495-2498 Gene denotes Pf4 Gene:5196
51 2965-2969 Species denotes mice Tax:10090
52 3036-3040 Species denotes H1N1 Tax:114727
53 3160-3166 Species denotes tomato Tax:4081
54 3499-3503 Species denotes mice Tax:10090
55 3556-3560 Species denotes H1N1 Tax:114727
56 3144-3148 Chemical denotes DAPI MESH:C007293
57 3698-3702 Chemical denotes DAPI MESH:C007293
58 2615-2624 Disease denotes pneumonia MESH:D011014
59 2937-2946 Disease denotes infection MESH:D007239
60 2989-2997 Disease denotes infected MESH:D007239
61 3509-3517 Disease denotes infected MESH:D007239
67 1831-1852 Gene denotes von Willebrand factor Gene:7450
68 1854-1857 Gene denotes VWF Gene:7450
69 1863-1891 Gene denotes tissue plasminogen activator Gene:100128998
70 1788-1800 Chemical denotes nitric oxide MESH:D009569
71 1802-1816 Chemical denotes prostaglandins MESH:D011453

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T10 30-38 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T11 1090-1096 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T12 1250-1259 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T13 1411-1417 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T14 1570-1576 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T15 2094-2100 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T16 2142-2148 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T17 2615-2624 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T18 2937-2946 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T19 3015-3024 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T20 3535-3544 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T12 13-14 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 127-145 http://www.ebi.ac.uk/efo/EFO_0000791 denotes circulatory system
T14 127-145 http://www.ebi.ac.uk/efo/EFO_0000817 denotes circulatory system
T15 171-176 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T16 171-176 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T17 229-235 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T18 248-254 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organs
T19 359-377 http://www.ebi.ac.uk/efo/EFO_0000791 denotes circulatory system
T20 359-377 http://www.ebi.ac.uk/efo/EFO_0000817 denotes circulatory system
T21 379-387 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arteries
T22 379-387 http://www.ebi.ac.uk/efo/EFO_0000814 denotes arteries
T23 404-419 http://www.ebi.ac.uk/efo/EFO_0000814 denotes arterial system
T24 422-427 http://purl.obolibrary.org/obo/UBERON_0001638 denotes veins
T25 422-427 http://www.ebi.ac.uk/efo/EFO_0000816 denotes veins
T26 547-560 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T27 547-560 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessels
T28 645-650 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aorta
T29 681-699 http://www.ebi.ac.uk/efo/EFO_0000791 denotes circulatory system
T30 681-699 http://www.ebi.ac.uk/efo/EFO_0000817 denotes circulatory system
T31 716-721 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T32 716-721 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T33 716-721 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T34 716-721 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T35 750-758 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arteries
T36 750-758 http://www.ebi.ac.uk/efo/EFO_0000814 denotes arteries
T37 792-797 http://purl.obolibrary.org/obo/UBERON_0001638 denotes veins
T38 792-797 http://www.ebi.ac.uk/efo/EFO_0000816 denotes veins
T39 829-834 http://purl.obolibrary.org/obo/UBERON_0001638 denotes veins
T40 829-834 http://www.ebi.ac.uk/efo/EFO_0000816 denotes veins
T41 875-880 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T42 875-880 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T43 915-921 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organs
T44 1061-1078 http://purl.obolibrary.org/obo/CL_0000115 denotes Endothelial cells
T45 1196-1197 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 1317-1322 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T47 1317-1322 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T48 1438-1442 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T49 1553-1569 http://purl.obolibrary.org/obo/CL_0000115 denotes endothelial cell
T50 1616-1617 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T51 1727-1743 http://purl.obolibrary.org/obo/CL_0000115 denotes endothelial cell
T52 1870-1881 http://purl.obolibrary.org/obo/PR_000012867 denotes plasminogen
T53 1882-1891 http://purl.obolibrary.org/obo/CLO_0001658 denotes activator
T54 1954-1970 http://purl.obolibrary.org/obo/CL_0000115 denotes endothelial cell
T55 1983-1987 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T56 2001-2019 http://purl.obolibrary.org/obo/UBERON_0005769 denotes basement membranes
T57 2036-2055 http://purl.obolibrary.org/obo/CL_0000192 denotes smooth muscle cells
T58 2128-2129 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T59 2283-2293 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T60 2315-2334 http://purl.obolibrary.org/obo/CL_0000192 denotes smooth muscle cells
T61 2362-2367 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T62 2379-2385 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessel
T63 2392-2398 http://purl.obolibrary.org/obo/UBERON_0000055 denotes Vessel
T64 2626-2627 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 2706-2711 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T66 2727-2744 http://purl.obolibrary.org/obo/UBERON_0034922 denotes cells of clusters
T67 2777-2778 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T68 2838-2843 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T69 2909-2914 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T70 2922-2926 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T71 2922-2926 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T72 3025-3026 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T73 3032-3034 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T74 3042-3049 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T75 3083-3088 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T76 3096-3100 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T77 3096-3100 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T78 3212-3216 http://purl.obolibrary.org/obo/CLO_0007622 denotes m. d
T79 3260-3265 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T80 3273-3277 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T81 3273-3277 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T82 3308-3313 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T83 3428-3432 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T84 3475-3480 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T85 3545-3546 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T86 3552-3554 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T87 3562-3569 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T88 3603-3608 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T89 3616-3620 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T90 3616-3620 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T91 3966-3971 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T92 4030-4043 http://purl.obolibrary.org/obo/UBERON_0034922 denotes cell clusters
T93 4071-4075 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T94 4071-4075 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T95 4080-4084 http://purl.obolibrary.org/obo/UBERON_0002481 denotes bone

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 178-184 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T3 886-895 Chemical denotes nutrients http://purl.obolibrary.org/obo/CHEBI_33284
T4 1360-1366 Chemical denotes toxins http://purl.obolibrary.org/obo/CHEBI_27026
T5 1448-1461 Chemical denotes nucleic acids http://purl.obolibrary.org/obo/CHEBI_33696
T6 1456-1461 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T7 1517-1525 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T8 1768-1776 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T9 1788-1800 Chemical denotes nitric oxide http://purl.obolibrary.org/obo/CHEBI_16480
T10 1795-1800 Chemical denotes oxide http://purl.obolibrary.org/obo/CHEBI_25741|http://purl.obolibrary.org/obo/CHEBI_29356
T12 1802-1816 Chemical denotes prostaglandins http://purl.obolibrary.org/obo/CHEBI_26333
T13 2165-2174 Chemical denotes endocrine http://purl.obolibrary.org/obo/CHEBI_24621
T14 3027-3029 Chemical denotes PR http://purl.obolibrary.org/obo/CHEBI_73645
T15 3119-3126 Chemical denotes nucleus http://purl.obolibrary.org/obo/CHEBI_33252
T16 3144-3148 Chemical denotes DAPI http://purl.obolibrary.org/obo/CHEBI_51231
T17 3322-3327 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T18 3400-3402 Chemical denotes SD http://purl.obolibrary.org/obo/CHEBI_74807
T19 3547-3549 Chemical denotes PR http://purl.obolibrary.org/obo/CHEBI_73645
T20 3673-3680 Chemical denotes nucleus http://purl.obolibrary.org/obo/CHEBI_33252
T21 3698-3702 Chemical denotes DAPI http://purl.obolibrary.org/obo/CHEBI_51231
T22 3975-3978 Chemical denotes PCA http://purl.obolibrary.org/obo/CHEBI_36751|http://purl.obolibrary.org/obo/CHEBI_62248

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T3 1280-1296 Phenotype denotes oxidative stress http://purl.obolibrary.org/obo/HP_0025464
T4 1298-1305 Phenotype denotes hypoxia http://purl.obolibrary.org/obo/HP_0012418
T5 2615-2624 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T4 1022-1033 http://purl.obolibrary.org/obo/GO_0042592 denotes homeostasis
T5 1870-1891 http://purl.obolibrary.org/obo/GO_0031639 denotes plasminogen activator
T6 2208-2214 http://purl.obolibrary.org/obo/GO_0040007 denotes growth

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T7 0-61 Sentence denotes Establishing a foundation for COVID-19 and vascular pathology
T8 63-82 Sentence denotes The vascular system
T9 83-316 Sentence denotes The vascular system also referred to as the circulatory system or vascular tree carries blood, oxygen and essential elements to all metabolically active tissues and organs of the body and carries waste materials and by-products away.
T10 317-528 Sentence denotes There are five distinct components of the circulatory system: arteries and arterioles (arterial system), veins and venules (venous system) and capillaries (microvascular system) that link arterioles and venules.
T11 529-669 Sentence denotes The dimensions of blood vessels vary by an order of several thousand-fold with capillaries as small as 10 µm to the aorta of 25 mm (Fig. 1).
T12 670-835 Sentence denotes Fig. 1 The circulatory system consists of the heart and large, medium and small arteries (arterioles), capillaries, small veins (venules, sinusoids) and large veins.
T13 836-1055 Sentence denotes Normal function depends on the flow of blood (and nutrients) to and from vital organs; however, the microvessels (arterioles, capillaries and venules) are responsible for vascular tone, homeostasis and tissue perfusion.
T14 1056-1060 Sentence denotes From
T15 1061-1137 Sentence denotes Endothelial cells respond to injury in several stages (reviewed in Abraham).
T16 1138-1526 Sentence denotes While there may be injurious agent-specific responses, in a majority of cases the initial event is triggered by infection (viral, bacterial), oxidative stress, hypoxia, turbulent blood flow and shear stress, environmental toxins and circulating elements that follow tissue injury with the release of cell-free nucleic acids, histones, chemokines, cytokines and damage-associated proteins.
T17 1527-1671 Sentence denotes The two-level response to endothelial cell injury includes an initial rapid response and a slower phenotypic response (reviewed in Abraham) [1].
T18 1672-1892 Sentence denotes Briefly, the initial response causes sudden changes in endothelial cell protective or integrity proteins, including nitric oxide, prostaglandins, endothelins, von Willebrand factor (VWF) and tissue plasminogen activator.
T19 1893-2056 Sentence denotes The slower phenotype response reflects structural changes of endothelial cell topography, cell orientation, basement membranes and surrounding smooth muscle cells.
T20 2057-2391 Sentence denotes In addition to the extent of initial injury, phenotypic changes follow a response to injury with release of endocrine and paracrine factors, primarily growth factors that provoke the deposition of extracellular matrix and the activation and proliferation of smooth muscle cells, pericytes and mesenchymal cells within the vessel wall.
T21 2392-2487 Sentence denotes Vessel remodeling can occur with changes in cellular architecture and function [2, 3] (Fig. 2).
T22 2488-2947 Sentence denotes Fig. 2 Pf4+-macrophages are the major resource to generate second wave of pro-inflammatory factors at late stage of IAV-driven pneumonia. a Heat-maps showing the normalized expression (Z-score) of the pro-inflammatory genes in the various cells of clusters with high ratios at day 7 p.i.. b The normalized expression (UMI counts) of some significant genes with high expression in different clusters at day 7 p.i.. c Pf4+ cells in the lung after IAV infection.
T23 2948-3050 Sentence denotes The tdtomato-Pf4 mice were uninfected or infected with 0.5 LD50 of influenza A/PR/8/34 (H1N1) viruses.
T24 3051-3114 Sentence denotes At day 7 p.i, the tdtomato-Pf4+ cells in the lung were scanned.
T25 3115-3194 Sentence denotes The nucleus was stained with DAPI (blue) and tomato-Pf4 (red) was shown in red.
T26 3195-3294 Sentence denotes Scale bars, 500 μm. d At day 0 and day 7 p.i., the tdtomato-Pf4+ cells in the lung were calculated.
T27 3295-3370 Sentence denotes At least 300 cells in each group from three independent assays were scored.
T28 3371-3481 Sentence denotes Data are shown as the mean ± SD. **, P < 0.01 (Student t test, n = 3). e The expression of Ccl2 in Pf4+ cells.
T29 3482-3570 Sentence denotes The tdTomato-Pf4 mice were infected with 0.5 LD50 of influenza A/PR/8/34 (H1N1) viruses.
T30 3571-3668 Sentence denotes At day 7 p.i, the tdTomato-Pf4+ cells in the lung were stained with anti-Ccl2 antibodies (green).
T31 3669-3750 Sentence denotes The nucleus was stained with DAPI (blue) and Pf4-tdTomato (red) was shown in red.
T32 3751-4129 Sentence denotes Scale bars, left, 200 μm; right, 50 μm. f Heatmap showing the scaled distances calculated based on Pearson correlations for relationships between the z-score normalized mean expression profiles in all the indicated cells. g PCA plot showing the relationships among the indicated cell clusters and the megakarycytes from lung and bone mellow described by others (SRP097794, NCBI)
T33 4130-4144 Sentence denotes (From Zhang J.
T34 4145-4175 Sentence denotes PLoS Pathol 2020;16: e1008334.
T35 4176-4192 Sentence denotes With permission)

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T17 30-38 SP_7 denotes COVID-19
T18 67-82 UBERON:0007798 denotes vascular system
T19 87-102 UBERON:0007798 denotes vascular system
T20 127-145 UBERON:0001009 denotes circulatory system
T21 149-162 UBERON:0002049 denotes vascular tree
T22 171-176 UBERON:0000178 denotes blood
T23 215-228 GO:0036109 denotes metabolically
T24 236-243 UBERON:0000479 denotes tissues
T25 248-254 UBERON:0000062 denotes organs
T26 359-377 UBERON:0001009 denotes circulatory system
T27 379-387 UBERON:0004573 denotes arteries
T28 392-402 UBERON:0001980 denotes arterioles
T29 404-419 UBERON:0004572 denotes arterial system
T30 422-427 UBERON:0001638 denotes veins
T31 432-439 UBERON:0001979 denotes venules
T32 441-454 UBERON:0004582 denotes venous system
T33 460-471 UBERON:0001982 denotes capillaries
T34 505-515 UBERON:0001980 denotes arterioles
T35 520-527 UBERON:0001979 denotes venules
T36 547-560 UBERON:0001981 denotes blood vessels
T37 608-619 UBERON:0001982 denotes capillaries
T38 645-650 UBERON:0000947 denotes aorta
T39 681-699 UBERON:0001009 denotes circulatory system
T40 716-721 UBERON:0000948 denotes heart
T41 750-758 UBERON:0001637 denotes arteries
T42 760-770 UBERON:0001980 denotes arterioles
T43 773-784 UBERON:0001982 denotes capillaries
T44 792-797 UBERON:0001638 denotes veins
T45 799-806 UBERON:0001979 denotes venules
T46 808-817 UBERON:0003909 denotes sinusoids
T47 829-834 UBERON:0001638 denotes veins
T48 875-880 UBERON:0000178 denotes blood
T49 886-895 CHEBI:33284;CHEBI:33284 denotes nutrients
T50 915-921 UBERON:0000062 denotes organs
T51 950-960 UBERON:0001980 denotes arterioles
T52 962-973 UBERON:0001982 denotes capillaries
T53 978-985 UBERON:0001979 denotes venules
T54 1022-1033 GO:0042592 denotes homeostasis
T55 1038-1044 UBERON:0000479 denotes tissue
T73 1061-1072 UBERON:0001986;CL:0000115 denotes Endothelial
T74 1073-1078 CL:0000115 denotes cells
T75 1261-1266 NCBITaxon:10239 denotes viral
T76 1268-1277 NCBITaxon:2 denotes bacterial
T77 1280-1289 MOP:0000568 denotes oxidative
T78 1317-1322 UBERON:0000178 denotes blood
T79 1360-1366 CHEBI:27026;CHEBI:27026 denotes toxins
T80 1404-1410 UBERON:0000479 denotes tissue
T81 1448-1455 GO:0005634 denotes nucleic
T82 1463-1471 CHEBI:15358;CHEBI:15358 denotes histones
T83 1553-1564 UBERON:0001986;CL:0000115 denotes endothelial
T84 1565-1569 CL:0000115 denotes cell
T85 1727-1738 UBERON:0001986;CL:0000115 denotes endothelial
T86 1739-1743 CL:0000115 denotes cell
T87 1788-1800 CHEBI:16480;CHEBI:16480 denotes nitric oxide
T88 1802-1816 CHEBI:26333;CHEBI:26333 denotes prostaglandins
T89 1831-1852 PR:000017364 denotes von Willebrand factor
T90 1854-1857 PR:000017364 denotes VWF
T91 1863-1869 UBERON:0000479 denotes tissue
T92 1870-1881 PR:000012867 denotes plasminogen
T93 1954-1965 UBERON:0001986;CL:0000115 denotes endothelial
T94 1966-1970 CL:0000115 denotes cell
T95 2036-2049 UBERON:0001135;CL:0000192 denotes smooth muscle
T96 2050-2055 CL:0000192 denotes cells
T97 2179-2188 GO:0038001 denotes paracrine
T98 2254-2274 GO:0031012 denotes extracellular matrix
T99 2283-2293 GO:0001775 denotes activation
T100 2298-2314 GO:0008283 denotes proliferation of
T101 2315-2328 UBERON:0001135;CL:0000192 denotes smooth muscle
T102 2329-2334 CL:0000192 denotes cells
T103 2336-2345 CL:0000669 denotes pericytes
T104 2350-2361 UBERON:0003104;CL:0000134 denotes mesenchymal
T105 2362-2367 CL:0000134 denotes cells
T106 2379-2385 UBERON:0000055 denotes vessel
T107 2386-2390 UBERON:0000060 denotes wall
T108 2392-2398 UBERON:0001638 denotes Vessel
T109 2493-2498 PR:000012569 denotes 2 Pf4
T110 2500-2511 CL:0000235 denotes macrophages
T111 2661-2671 GO:0010467 denotes expression
T112 2706-2711 SO:0000704 denotes genes
T113 2794-2804 GO:0010467 denotes expression
T114 2838-2843 SO:0000704 denotes genes
T115 2854-2864 GO:0010467 denotes expression
T116 2904-2907 PR:000012569 denotes Pf4
T117 2922-2926 UBERON:0002048 denotes lung
T118 2961-2964 PR:000012569 denotes Pf4
T119 2965-2969 NCBITaxon:10088 denotes mice
T120 3042-3049 NCBITaxon:10239 denotes viruses
T121 3078-3081 PR:000012569 denotes Pf4
T122 3096-3100 UBERON:0002048 denotes lung
T123 3119-3126 GO:0005634 denotes nucleus
T124 3144-3148 CHEBI:51231;CHEBI:51231 denotes DAPI
T125 3167-3170 PR:000012569 denotes Pf4
T126 3255-3258 PR:000012569 denotes Pf4
T127 3273-3277 UBERON:0002048 denotes lung
T128 3448-3458 GO:0010467 denotes expression
T129 3462-3466 PR:000002122 denotes Ccl2
T130 3470-3473 PR:000012569 denotes Pf4
T131 3495-3498 PR:000012569 denotes Pf4
T132 3499-3503 NCBITaxon:10088 denotes mice
T133 3535-3544 NCBITaxon:7719 denotes influenza
T134 3562-3569 NCBITaxon:10239 denotes viruses
T135 3598-3601 PR:000012569 denotes Pf4
T136 3616-3620 UBERON:0002048 denotes lung
T137 3644-3648 PR:000002122 denotes Ccl2
T138 3649-3659 GO:0042571 denotes antibodies
T139 3673-3680 GO:0005634 denotes nucleus
T140 3698-3702 CHEBI:51231;CHEBI:51231 denotes DAPI
T141 3714-3717 PR:000012569 denotes Pf4
T142 3925-3935 GO:0010467 denotes expression
T143 4052-4065 CL:0000556 denotes megakarycytes
T144 4071-4075 UBERON:0002048 denotes lung
T16580 30-38 SP_7 denotes COVID-19
T88383 67-82 UBERON:0007798 denotes vascular system
T14611 87-102 UBERON:0007798 denotes vascular system
T3536 127-145 UBERON:0001009 denotes circulatory system
T39747 149-162 UBERON:0002049 denotes vascular tree
T40703 171-176 UBERON:0000178 denotes blood
T77644 215-228 GO:0036109 denotes metabolically
T32242 236-243 UBERON:0000479 denotes tissues
T22954 248-254 UBERON:0000062 denotes organs
T60401 359-377 UBERON:0001009 denotes circulatory system
T99371 379-387 UBERON:0004573 denotes arteries
T31841 392-402 UBERON:0001980 denotes arterioles
T3604 404-419 UBERON:0004572 denotes arterial system
T59119 422-427 UBERON:0001638 denotes veins
T57398 432-439 UBERON:0001979 denotes venules
T10367 441-454 UBERON:0004582 denotes venous system
T99322 460-471 UBERON:0001982 denotes capillaries
T85787 505-515 UBERON:0001980 denotes arterioles
T5939 520-527 UBERON:0001979 denotes venules
T87945 547-560 UBERON:0001981 denotes blood vessels
T66236 608-619 UBERON:0001982 denotes capillaries
T45462 645-650 UBERON:0000947 denotes aorta
T46824 681-699 UBERON:0001009 denotes circulatory system
T44409 716-721 UBERON:0000948 denotes heart
T77228 750-758 UBERON:0001637 denotes arteries
T84220 760-770 UBERON:0001980 denotes arterioles
T95049 773-784 UBERON:0001982 denotes capillaries
T76263 792-797 UBERON:0001638 denotes veins
T78904 799-806 UBERON:0001979 denotes venules
T82130 808-817 UBERON:0003909 denotes sinusoids
T76191 829-834 UBERON:0001638 denotes veins
T1038 875-880 UBERON:0000178 denotes blood
T58913 886-895 CHEBI:33284;CHEBI:33284 denotes nutrients
T31732 915-921 UBERON:0000062 denotes organs
T74604 950-960 UBERON:0001980 denotes arterioles
T24130 962-973 UBERON:0001982 denotes capillaries
T13187 978-985 UBERON:0001979 denotes venules
T39359 1022-1033 GO:0042592 denotes homeostasis
T94306 1038-1044 UBERON:0000479 denotes tissue

2_test

Id Subject Object Predicate Lexical cue
32700024-16266693-64991445 2472-2473 16266693 denotes 2
32700024-30894055-64991446 2475-2476 30894055 denotes 3