PMC:7371427 / 7793-8699
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T43 | 191-195 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T44 | 200-207 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T45 | 306-310 | Body_part | denotes | Cell | http://purl.org/sig/ont/fma/fma68646 |
| T46 | 311-314 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T47 | 557-562 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T48 | 592-598 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T49 | 728-735 | Body_part | denotes | tissues | http://purl.org/sig/ont/fma/fma9637 |
| T50 | 740-744 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T16 | 592-598 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 37 | 876-884 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T33 | 876-884 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T73 | 191-195 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T74 | 297-298 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T75 | 306-310 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cell |
| T76 | 557-562 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T77 | 576-581 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T78 | 586-591 | http://purl.obolibrary.org/obo/CLO_0007836 | denotes | mouse |
| T79 | 671-672 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T80 | 740-750 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell types |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T10 | 200-207 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T44 | 0-228 | Sentence | denotes | In order to assess the veracity of these conceptual associations derived from biomedical literature, it is absolutely essential to enable triangulation with structured data sources including gene and protein expression datasets. |
| T45 | 229-617 | Sentence | denotes | To address this need and empower the scientific community, we built a Single Cell RNA-seq (scRNAseq) resource (https://academia.nferx.com/) which harnesses these local and global score metrics to enable seamless integration of literature-derived associations with the analysis of transcriptomes from over 2.2 million individual cells from over 50 human and mouse tissue-types (Figure 1B). |
| T46 | 618-906 | Sentence | denotes | Here, we use this first-in-class resource to conduct a comprehensive expression profiling of ACE2 across host tissues and cell types and discuss how the observed expression patterns correlate with the pathogenicity and viral transmission shaping the ongoing COVID-19 pandemic (Figure 1C). |