PMC:7371427 / 74061-74629 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T728","span":{"begin":89,"end":93},"obj":"Body_part"},{"id":"T729","span":{"begin":149,"end":153},"obj":"Body_part"},{"id":"T730","span":{"begin":320,"end":324},"obj":"Body_part"},{"id":"T731","span":{"begin":554,"end":558},"obj":"Body_part"}],"attributes":[{"id":"A728","pred":"fma_id","subj":"T728","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A729","pred":"fma_id","subj":"T729","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A730","pred":"fma_id","subj":"T730","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A731","pred":"fma_id","subj":"T731","obj":"http://purl.org/sig/ont/fma/fma68646"}],"text":"For each study, a counts matrix was downloaded from a public data repository such as the Gene Expression Omnibus (GEO) or the Broad Institute Single Cell Portal (Supplementary file 1). Note that this data has not been re-processed from the raw sequencing output, and so it is likely that alignment and quantification of gene expression was performed using different tools for different studies. In some cases, multiple complementary datasets have been generated from a single publication. In these cases, we have generated separate entries in the Single Cell platform."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T1131","span":{"begin":16,"end":17},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1132","span":{"begin":52,"end":53},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1133","span":{"begin":89,"end":93},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T1134","span":{"begin":149,"end":153},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1135","span":{"begin":205,"end":208},"obj":"http://purl.obolibrary.org/obo/CLO_0051582"},{"id":"T1136","span":{"begin":320,"end":324},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T1137","span":{"begin":467,"end":468},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1138","span":{"begin":554,"end":558},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"For each study, a counts matrix was downloaded from a public data repository such as the Gene Expression Omnibus (GEO) or the Broad Institute Single Cell Portal (Supplementary file 1). Note that this data has not been re-processed from the raw sequencing output, and so it is likely that alignment and quantification of gene expression was performed using different tools for different studies. In some cases, multiple complementary datasets have been generated from a single publication. In these cases, we have generated separate entries in the Single Cell platform."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T68","span":{"begin":89,"end":104},"obj":"http://purl.obolibrary.org/obo/GO_0010467"},{"id":"T69","span":{"begin":320,"end":335},"obj":"http://purl.obolibrary.org/obo/GO_0010467"}],"text":"For each study, a counts matrix was downloaded from a public data repository such as the Gene Expression Omnibus (GEO) or the Broad Institute Single Cell Portal (Supplementary file 1). Note that this data has not been re-processed from the raw sequencing output, and so it is likely that alignment and quantification of gene expression was performed using different tools for different studies. In some cases, multiple complementary datasets have been generated from a single publication. In these cases, we have generated separate entries in the Single Cell platform."}

{"project":"LitCovid-sentences","denotations":[{"id":"T442","span":{"begin":0,"end":184},"obj":"Sentence"},{"id":"T443","span":{"begin":185,"end":394},"obj":"Sentence"},{"id":"T444","span":{"begin":395,"end":488},"obj":"Sentence"},{"id":"T445","span":{"begin":489,"end":568},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"For each study, a counts matrix was downloaded from a public data repository such as the Gene Expression Omnibus (GEO) or the Broad Institute Single Cell Portal (Supplementary file 1). Note that this data has not been re-processed from the raw sequencing output, and so it is likely that alignment and quantification of gene expression was performed using different tools for different studies. In some cases, multiple complementary datasets have been generated from a single publication. In these cases, we have generated separate entries in the Single Cell platform."}