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PMC:7371427 / 72756-74022 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T668 7-11 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T669 12-15 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T670 66-70 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T671 138-142 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T672 143-146 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T673 247-251 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T674 311-318 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T675 327-341 Body_part denotes adipose tissue http://purl.org/sig/ont/fma/fma20110
T676 343-348 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T677 350-361 Body_part denotes bone marrow http://purl.org/sig/ont/fma/fma9608
T678 363-368 Body_part denotes colon http://purl.org/sig/ont/fma/fma14543
T679 370-379 Body_part denotes esophagus http://purl.org/sig/ont/fma/fma7131
T680 381-386 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197
T681 388-392 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T682 394-400 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T683 402-407 Body_part denotes ovary http://purl.org/sig/ont/fma/fma7209
T684 409-425 Body_part denotes nasal epithelium http://purl.org/sig/ont/fma/fma63140
T685 415-425 Body_part denotes epithelium http://purl.org/sig/ont/fma/fma9639
T686 427-435 Body_part denotes pancreas http://purl.org/sig/ont/fma/fma7198
T687 437-445 Body_part denotes placenta http://purl.org/sig/ont/fma/fma63934
T688 447-455 Body_part denotes prostate http://purl.org/sig/ont/fma/fma9600
T689 457-463 Body_part denotes retina http://purl.org/sig/ont/fma/fma58301
T690 465-480 Body_part denotes small intestine http://purl.org/sig/ont/fma/fma7200
T691 486-492 Body_part denotes spleen http://purl.org/sig/ont/fma/fma7196
T692 509-515 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T693 638-645 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T694 684-689 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T695 790-795 Body_part denotes colon http://purl.org/sig/ont/fma/fma14543
T696 808-812 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T697 875-882 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T698 893-907 Body_part denotes adipose tissue http://purl.org/sig/ont/fma/fma20110
T699 916-926 Body_part denotes epithelium http://purl.org/sig/ont/fma/fma9639
T700 928-933 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T701 935-946 Body_part denotes bone marrow http://purl.org/sig/ont/fma/fma9608
T702 948-953 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T703 955-961 Body_part denotes breast http://purl.org/sig/ont/fma/fma9601
T704 963-968 Body_part denotes colon http://purl.org/sig/ont/fma/fma14543
T705 970-975 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T706 977-983 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T707 985-990 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197
T708 992-996 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T709 998-1003 Body_part denotes ovary http://purl.org/sig/ont/fma/fma7209
T710 1005-1013 Body_part denotes pancreas http://purl.org/sig/ont/fma/fma7198
T711 1015-1023 Body_part denotes placenta http://purl.org/sig/ont/fma/fma63934
T712 1025-1033 Body_part denotes prostate http://purl.org/sig/ont/fma/fma9600
T713 1044-1050 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T714 1052-1056 Body_part denotes skin http://purl.org/sig/ont/fma/fma7163
T715 1058-1064 Body_part denotes spleen http://purl.org/sig/ont/fma/fma7196
T716 1066-1073 Body_part denotes stomach http://purl.org/sig/ont/fma/fma7148
T717 1075-1090 Body_part denotes small intestine http://purl.org/sig/ont/fma/fma7200
T718 1092-1098 Body_part denotes testis http://purl.org/sig/ont/fma/fma7210
T719 1100-1106 Body_part denotes thymus http://purl.org/sig/ont/fma/fma9607
T720 1108-1114 Body_part denotes tongue http://purl.org/sig/ont/fma/fma54640
T721 1116-1123 Body_part denotes trachea http://purl.org/sig/ont/fma/fma7394
T722 1125-1140 Body_part denotes urinary bladder http://purl.org/sig/ont/fma/fma15900
T723 1142-1148 Body_part denotes uterus http://purl.org/sig/ont/fma/fma17558
T724 1154-1165 Body_part denotes vasculature http://purl.org/sig/ont/fma/fma69050
T725 1229-1233 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T726 1253-1260 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T290 327-341 Body_part denotes adipose tissue http://purl.obolibrary.org/obo/UBERON_0001013
T291 335-341 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T292 343-348 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T293 350-361 Body_part denotes bone marrow http://purl.obolibrary.org/obo/UBERON_0002371
T294 363-368 Body_part denotes colon http://purl.obolibrary.org/obo/UBERON_0001155
T295 370-379 Body_part denotes esophagus http://purl.obolibrary.org/obo/UBERON_0001043
T296 381-386 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T297 388-392 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T298 394-400 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T299 409-425 Body_part denotes nasal epithelium http://purl.obolibrary.org/obo/UBERON_0005384
T300 415-425 Body_part denotes epithelium http://purl.obolibrary.org/obo/UBERON_0000483
T301 427-435 Body_part denotes pancreas http://purl.obolibrary.org/obo/UBERON_0001264
T302 437-445 Body_part denotes placenta http://purl.obolibrary.org/obo/UBERON_0001987
T303 457-463 Body_part denotes retina http://purl.obolibrary.org/obo/UBERON_0000966
T304 465-480 Body_part denotes small intestine http://purl.obolibrary.org/obo/UBERON_0002108
T305 471-480 Body_part denotes intestine http://purl.obolibrary.org/obo/UBERON_0000160
T306 486-492 Body_part denotes spleen http://purl.obolibrary.org/obo/UBERON_0002106
T307 509-515 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T308 790-795 Body_part denotes colon http://purl.obolibrary.org/obo/UBERON_0001155
T309 808-812 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T310 893-907 Body_part denotes adipose tissue http://purl.obolibrary.org/obo/UBERON_0001013
T311 901-907 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T312 916-926 Body_part denotes epithelium http://purl.obolibrary.org/obo/UBERON_0000483
T313 928-933 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T314 935-946 Body_part denotes bone marrow http://purl.obolibrary.org/obo/UBERON_0002371
T315 948-953 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T316 955-961 Body_part denotes breast http://purl.obolibrary.org/obo/UBERON_0000310
T317 963-968 Body_part denotes colon http://purl.obolibrary.org/obo/UBERON_0001155
T318 970-975 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T319 977-983 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T320 985-990 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T321 992-996 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T322 1005-1013 Body_part denotes pancreas http://purl.obolibrary.org/obo/UBERON_0001264
T323 1015-1023 Body_part denotes placenta http://purl.obolibrary.org/obo/UBERON_0001987
T324 1052-1056 Body_part denotes skin http://purl.obolibrary.org/obo/UBERON_0000014
T325 1058-1064 Body_part denotes spleen http://purl.obolibrary.org/obo/UBERON_0002106
T326 1066-1073 Body_part denotes stomach http://purl.obolibrary.org/obo/UBERON_0000945
T327 1075-1090 Body_part denotes small intestine http://purl.obolibrary.org/obo/UBERON_0002108
T328 1081-1090 Body_part denotes intestine http://purl.obolibrary.org/obo/UBERON_0000160
T329 1092-1098 Body_part denotes testis http://purl.obolibrary.org/obo/UBERON_0000473
T330 1100-1106 Body_part denotes thymus http://purl.obolibrary.org/obo/UBERON_0002370
T331 1108-1114 Body_part denotes tongue http://purl.obolibrary.org/obo/UBERON_0001723
T332 1116-1123 Body_part denotes trachea http://purl.obolibrary.org/obo/UBERON_0003126
T333 1125-1140 Body_part denotes urinary bladder http://purl.obolibrary.org/obo/UBERON_0001255
T334 1142-1148 Body_part denotes uterus http://purl.obolibrary.org/obo/UBERON_0000995
T335 1154-1165 Body_part denotes vasculature http://purl.obolibrary.org/obo/UBERON_0002049

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
195 770-806 Disease denotes ulcerative colitis (colon) or asthma MESH:D003093

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T121 427-435 Disease denotes pancreas http://purl.obolibrary.org/obo/MONDO_0021040
T122 770-788 Disease denotes ulcerative colitis http://purl.obolibrary.org/obo/MONDO_0005101|http://purl.obolibrary.org/obo/MONDO_0009960
T124 770-780 Disease denotes ulcerative http://purl.obolibrary.org/obo/MONDO_0043839
T125 781-788 Disease denotes colitis http://purl.obolibrary.org/obo/MONDO_0005292
T126 800-806 Disease denotes asthma http://purl.obolibrary.org/obo/MONDO_0004979
T127 1005-1013 Disease denotes pancreas http://purl.obolibrary.org/obo/MONDO_0021040

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1052 7-11 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1053 42-51 http://purl.obolibrary.org/obo/BFO_0000030 denotes objective
T1054 66-70 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1055 138-142 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1056 247-251 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell
T1057 280-285 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T1058 327-341 http://purl.obolibrary.org/obo/UBERON_0001013 denotes adipose tissue
T1059 343-348 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T1060 343-348 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T1061 350-354 http://purl.obolibrary.org/obo/UBERON_0002481 denotes bone
T1062 363-368 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colon
T1063 370-379 http://purl.obolibrary.org/obo/UBERON_0001043 denotes esophagus
T1064 381-386 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T1065 381-386 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T1066 388-392 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T1067 388-392 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T1068 394-400 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T1069 394-400 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T1070 394-400 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T1071 402-407 http://www.ebi.ac.uk/efo/EFO_0000973 denotes ovary
T1072 415-425 http://purl.obolibrary.org/obo/UBERON_0000483 denotes epithelium
T1073 427-435 http://purl.obolibrary.org/obo/UBERON_0001264 denotes pancreas
T1074 437-445 http://purl.obolibrary.org/obo/UBERON_0001987 denotes placenta
T1075 437-445 http://www.ebi.ac.uk/efo/EFO_0001407 denotes placenta
T1076 457-463 http://purl.obolibrary.org/obo/UBERON_0000966 denotes retina
T1077 465-480 http://purl.obolibrary.org/obo/UBERON_0002108 denotes small intestine
T1078 486-492 http://purl.obolibrary.org/obo/UBERON_0002106 denotes spleen
T1079 505-508 http://purl.obolibrary.org/obo/NCBITaxon_9596 denotes pan
T1080 549-555 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T1081 632-637 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T1082 684-689 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1083 740-741 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T1084 790-795 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colon
T1085 808-812 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T1086 808-812 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T1087 830-831 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T1088 893-907 http://purl.obolibrary.org/obo/UBERON_0001013 denotes adipose tissue
T1089 909-915 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway
T1090 916-926 http://purl.obolibrary.org/obo/UBERON_0000483 denotes epithelium
T1091 928-933 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T1092 928-933 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T1093 935-939 http://purl.obolibrary.org/obo/UBERON_0002481 denotes bone
T1094 948-953 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T1095 948-953 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T1096 955-961 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
T1097 963-968 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colon
T1098 970-975 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T1099 970-975 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T1100 970-975 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T1101 970-975 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T1102 977-983 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T1103 977-983 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T1104 977-983 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T1105 985-990 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T1106 985-990 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T1107 992-996 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T1108 992-996 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T1109 998-1003 http://www.ebi.ac.uk/efo/EFO_0000973 denotes ovary
T1110 1005-1013 http://purl.obolibrary.org/obo/UBERON_0001264 denotes pancreas
T1111 1015-1023 http://purl.obolibrary.org/obo/UBERON_0001987 denotes placenta
T1112 1015-1023 http://www.ebi.ac.uk/efo/EFO_0001407 denotes placenta
T1113 1035-1050 http://purl.obolibrary.org/obo/UBERON_0001134 denotes skeletal muscle
T1114 1035-1050 http://purl.obolibrary.org/obo/UBERON_0014892 denotes skeletal muscle
T1115 1035-1050 http://www.ebi.ac.uk/efo/EFO_0000888 denotes skeletal muscle
T1116 1052-1056 http://purl.obolibrary.org/obo/UBERON_0000014 denotes skin
T1117 1052-1056 http://purl.obolibrary.org/obo/UBERON_0001003 denotes skin
T1118 1052-1056 http://purl.obolibrary.org/obo/UBERON_0002097 denotes skin
T1119 1052-1056 http://purl.obolibrary.org/obo/UBERON_0002199 denotes skin
T1120 1052-1056 http://www.ebi.ac.uk/efo/EFO_0000962 denotes skin
T1121 1058-1064 http://purl.obolibrary.org/obo/UBERON_0002106 denotes spleen
T1122 1075-1090 http://purl.obolibrary.org/obo/UBERON_0002108 denotes small intestine
T1123 1092-1098 http://www.ebi.ac.uk/efo/EFO_0000984 denotes testis
T1124 1100-1106 http://purl.obolibrary.org/obo/UBERON_0002370 denotes thymus
T1125 1108-1114 http://purl.obolibrary.org/obo/UBERON_0001723 denotes tongue
T1126 1142-1148 http://purl.obolibrary.org/obo/UBERON_0000995 denotes uterus
T1127 1142-1148 http://www.ebi.ac.uk/efo/EFO_0000975 denotes uterus
T1128 1223-1228 http://purl.obolibrary.org/obo/CLO_0007836 denotes Mouse
T1129 1229-1233 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T26 770-788 Phenotype denotes ulcerative colitis http://purl.obolibrary.org/obo/HP_0100279
T27 800-806 Phenotype denotes asthma http://purl.obolibrary.org/obo/HP_0002099

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T434 0-37 Sentence denotes Single-cell RNA-seq analysis platform
T435 38-163 Sentence denotes The objective of the single cell platform is to enable dynamic visualization and analysis of single-cell RNA-sequencing data.
T436 164-493 Sentence denotes Currently, there are over 30 scRNAseq studies available for analysis in the Single Cell app, including studies from human donors/patients covering tissues such as adipose tissue, blood, bone marrow, colon, esophagus, liver, lung, kidney, ovary, nasal epithelium, pancreas, placenta, prostate, retina, small intestine, and spleen.
T437 494-646 Sentence denotes Because no pan-tissue reference dataset yet exists for humans, we have manually selected individual studies to maximally cover the set of human tissues.
T438 647-814 Sentence denotes In some cases, these studies contain cells from both healthy donors and patients affected by a specified pathology such as ulcerative colitis (colon) or asthma (lung).
T439 815-1166 Sentence denotes There are also a number of murine scRNAseq studies covering tissues including adipose tissue, airway epithelium, blood, bone marrow, brain, breast, colon, heart, kidney, liver, lung, ovary, pancreas, placenta, prostate, skeletal muscle, skin, spleen, stomach, small intestine, testis, thymus, tongue, trachea, urinary bladder, uterus, and vasculature.
T440 1167-1266 Sentence denotes Note that two of these murine studies (Tabula Muris and Mouse Cell Atlas) include ~20 tissues each.