PMC:7371427 / 64697-65489
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T660 | 187-191 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T661 | 322-328 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T662 | 573-579 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T283 | 322-328 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T284 | 573-579 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 192 | 404-410 | Disease | denotes | cancer | MESH:D009369 |
| 193 | 642-648 | Disease | denotes | cancer | MESH:D009369 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T995 | 76-77 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T996 | 106-107 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T997 | 187-191 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T998 | 246-250 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T999 | 304-305 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T1000 | 322-328 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T1001 | 322-328 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T1002 | 322-328 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T1003 | 573-579 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T1004 | 573-579 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T1005 | 573-579 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T1006 | 731-732 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T1007 | 737-738 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T66 | 209-215 | http://purl.obolibrary.org/obo/GO_0040007 | denotes | growth |
| T67 | 276-297 | http://purl.obolibrary.org/obo/GO_0003094 | denotes | glomerular filtration |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T375 | 0-129 | Sentence | denotes | One demonstration of the use of the logical query system is to disambiguate a token by conjoining it with a disambiguating token. |
| T376 | 130-303 | Sentence | denotes | An example is clearer: the token ‘egfr’ can refer to the gene entity epidermal growth factor receptor, but also the test measure entity estimated glomerular filtration rate. |
| T377 | 304-423 | Sentence | denotes | A query ‘egfr AND kidney’ should return results related to the latter meaning, while ‘egfr AND lung_cancer’ the former. |
| T378 | 424-521 | Sentence | denotes | In particular, an unambiguous referent to the right entity should be highly related to the query. |
| T379 | 522-687 | Sentence | denotes | So example known pairs in this data are (‘egfr AND kidney’, ‘estimated_glomerular_filtration_rate’) and (‘egfr AND lung_cancer’, ‘epidermal_growth_factor_receptor’). |
| T380 | 688-792 | Sentence | denotes | We used an internal set of ~200–300 such (‘A AND B’, ‘C’) pairs (originally built up for other reasons). |