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PMC:7371427 / 11881-13182 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T99 56-60 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T100 190-211 Body_part denotes pancreatic beta cells http://purl.org/sig/ont/fma/fma70586
T101 206-211 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T102 266-270 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T103 285-292 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T104 350-355 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T105 621-627 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T106 630-638 Body_part denotes pancreas http://purl.org/sig/ont/fma/fma7198
T107 644-648 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T108 661-682 Body_part denotes pancreatic beta cells http://purl.org/sig/ont/fma/fma70586
T109 677-682 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T110 751-756 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T111 799-804 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T112 857-861 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T113 887-892 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T114 938-944 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T115 1007-1011 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T116 1041-1045 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T117 1090-1094 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T118 1129-1150 Body_part denotes pancreatic beta cells http://purl.org/sig/ont/fma/fma70586
T119 1145-1150 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T120 1252-1256 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T32 621-627 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T33 630-638 Body_part denotes pancreas http://purl.obolibrary.org/obo/UBERON_0001264
T34 938-944 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T35 630-638 Disease denotes pancreas http://purl.obolibrary.org/obo/MONDO_0021040

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T154 56-60 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell
T155 112-113 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T156 156-157 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T157 201-211 http://purl.obolibrary.org/obo/CL_0000639 denotes beta cells
T158 252-255 http://purl.obolibrary.org/obo/CLO_0001079 denotes 148
T159 266-276 http://purl.obolibrary.org/obo/CL_0000000 denotes cell types
T160 282-284 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T161 350-355 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T162 363-364 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T163 445-446 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T164 541-548 http://purl.obolibrary.org/obo/SO_0000418 denotes Signals
T165 630-638 http://purl.obolibrary.org/obo/UBERON_0001264 denotes pancreas
T166 644-653 http://purl.obolibrary.org/obo/CL_0000000 denotes cell type
T167 672-682 http://purl.obolibrary.org/obo/CL_0000639 denotes beta cells
T168 687-688 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T169 751-756 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T170 799-804 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T171 857-861 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T172 887-892 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T173 902-903 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T174 986-991 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T175 996-997 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T176 1007-1011 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T177 1041-1045 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T178 1090-1094 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T179 1119-1124 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T180 1140-1150 http://purl.obolibrary.org/obo/CL_0000639 denotes beta cells
T181 1252-1256 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T19 201-205 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T20 672-676 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T21 1140-1144 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T69 0-29 Sentence denotes Figure 2—figure supplement 4.
T70 31-84 Sentence denotes Overview of nferX Single Cell platform functionality.
T71 85-293 Sentence denotes Use case shows results for a query of Ins1 in the Tabula Muris study. (A) Violin Plot section shows that pancreatic beta cells express Ins1 at the highest level among 148 annotated cell types from 18 tissues.
T72 294-508 Sentence denotes Summary statistics for each row indicate the percent of cells within a given cluster expressing Ins1, the mean expression of Ins1 in that cluster, and a metric of expression specificity (Cohen’s D) to each cluster.
T73 509-775 Sentence denotes On the left side of the table, ‘Signals’ columns highlight literature-derived associations between Ins1 and the tissue (‘pancreas’) or cell type (e.g. ‘pancreatic beta cells’). (B) Dimensionality reduction-based visualization of all ~100,600 cells from Tabula Muris.
T74 776-1095 Sentence denotes Left-sided plot colors cells (points) based on Ins1 expression in the individual cell; right-sided plot colors cells based on a selected metadata variable (here, tissue of origin). (C) List of cluster-defining genes for a selected cell population - by default, any cell population which highly expresses the query gene.
T75 1096-1180 Sentence denotes Here, cluster-defining genes for pancreatic beta cells include Ins1, Ins2, and Iapp.
T76 1181-1301 Sentence denotes Blue box highlights functionality to triangulate such cluster-defining gene lists with any literature query of interest.