PMC:7366549 / 7951-8722 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"http://pubannotation.org/docs/sourcedb/PMC/sourceid/7366549","sourcedb":"PMC","sourceid":"7366549","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7366549","text":"Sanger sequencing of bat coronavirus: The RT-PCR products were separated on 1.5 per cent agarose gel, and 440 bp bands were excised. The excised gels were extracted and purified using a QIAQuick gel extraction kit (Qiagen, Hilden, Germany). The purified products were quantified, and chain-terminated PCR reactions were performed using pathogen-specific forward and reverse primers21 with the BigDye Terminator 3.1 sequencing kit (Applied Biosystems, USA). BigDye reactions were purified using the DyeEx 2.0 spin kit (Qiagen, Germany). The purified chain-terminated reactions were sequenced using the ABI PRISM® 3100 Automated DNA Sequencer (Thermo Fisher Scientific, USA). The sequence data generated were assembled using the Sequencer 5.1 software (Accelrys Inc., USA).","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T24","span":{"begin":627,"end":630},"obj":"Body_part"}],"attributes":[{"id":"A24","pred":"fma_id","subj":"T24","obj":"http://purl.org/sig/ont/fma/fma74412"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"168","span":{"begin":21,"end":36},"obj":"Species"},{"id":"169","span":{"begin":89,"end":96},"obj":"Chemical"}],"attributes":[{"id":"A168","pred":"tao:has_database_id","subj":"168","obj":"Tax:1508220"},{"id":"A169","pred":"tao:has_database_id","subj":"169","obj":"MESH:D012685"},{"subj":"168","pred":"source","obj":"LitCovid-PubTator"},{"subj":"169","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T101","span":{"begin":21,"end":24},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T102","span":{"begin":184,"end":185},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"attributes":[{"subj":"T101","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T102","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T9","span":{"begin":89,"end":96},"obj":"Chemical"},{"id":"T10","span":{"begin":627,"end":630},"obj":"Chemical"}],"attributes":[{"id":"A9","pred":"chebi_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/CHEBI_2511"},{"id":"A10","pred":"chebi_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/CHEBI_16991"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"2_test","denotations":[{"id":"32317409-15681402-47001147","span":{"begin":381,"end":383},"obj":"15681402"},{"id":"T12484","span":{"begin":381,"end":383},"obj":"15681402"}],"attributes":[{"subj":"32317409-15681402-47001147","pred":"source","obj":"2_test"},{"subj":"T12484","pred":"source","obj":"2_test"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T59","span":{"begin":0,"end":37},"obj":"Sentence"},{"id":"T60","span":{"begin":38,"end":132},"obj":"Sentence"},{"id":"T61","span":{"begin":133,"end":240},"obj":"Sentence"},{"id":"T62","span":{"begin":241,"end":456},"obj":"Sentence"},{"id":"T63","span":{"begin":457,"end":535},"obj":"Sentence"},{"id":"T64","span":{"begin":536,"end":673},"obj":"Sentence"},{"id":"T65","span":{"begin":674,"end":771},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T59","pred":"source","obj":"LitCovid-sentences"},{"subj":"T60","pred":"source","obj":"LitCovid-sentences"},{"subj":"T61","pred":"source","obj":"LitCovid-sentences"},{"subj":"T62","pred":"source","obj":"LitCovid-sentences"},{"subj":"T63","pred":"source","obj":"LitCovid-sentences"},{"subj":"T64","pred":"source","obj":"LitCovid-sentences"},{"subj":"T65","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#93ecca","default":true},{"id":"LitCovid-PubTator","color":"#ecb093"},{"id":"LitCovid-PD-CLO","color":"#9693ec"},{"id":"LitCovid-PD-CHEBI","color":"#a9ec93"},{"id":"2_test","color":"#ec93c3"},{"id":"LitCovid-sentences","color":"#93ddec"}]}]}}