PMC:7366549 / 692-1317 JSONTXT

{"target":"http://pubannotation.org/docs/sourcedb/PMC/sourceid/7366549","sourcedb":"PMC","sourceid":"7366549","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7366549","text":"Methods:\nRepresentative rectal swab (RS) and throat swab specimens of Pteropus and Rousettus spp. bats were screened for CoVs using a pan-CoV reverse transcription-polymerase chain reaction (RT-PCR) targeting the RNA-dependent RNA polymerase (RdRp) gene. A single-step RT-PCR was performed on the RNA extracted from the bat specimens. Next-generation sequencing (NGS) was performed on a few representative bat specimens that were tested positive. Phylogenetic analysis was carried out on the partial sequences of RdRp gene sequences retrieved from both the bat species and complete viral genomes recovered from Rousettus spp.","divisions":[{"label":"title","span":{"begin":0,"end":8}}],"tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T1","span":{"begin":45,"end":51},"obj":"Body_part"},{"id":"T2","span":{"begin":213,"end":216},"obj":"Body_part"},{"id":"T3","span":{"begin":227,"end":230},"obj":"Body_part"},{"id":"T4","span":{"begin":249,"end":253},"obj":"Body_part"},{"id":"T5","span":{"begin":297,"end":300},"obj":"Body_part"},{"id":"T6","span":{"begin":518,"end":522},"obj":"Body_part"},{"id":"T7","span":{"begin":588,"end":595},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"fma_id","subj":"T1","obj":"http://purl.org/sig/ont/fma/fma228738"},{"id":"A2","pred":"fma_id","subj":"T2","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A3","pred":"fma_id","subj":"T3","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A4","pred":"fma_id","subj":"T4","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A5","pred":"fma_id","subj":"T5","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A6","pred":"fma_id","subj":"T6","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A7","pred":"fma_id","subj":"T7","obj":"http://purl.org/sig/ont/fma/fma84116"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T1","span":{"begin":45,"end":51},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0000341"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"29","span":{"begin":121,"end":125},"obj":"Species"},{"id":"30","span":{"begin":138,"end":141},"obj":"Species"},{"id":"31","span":{"begin":70,"end":78},"obj":"Species"},{"id":"32","span":{"begin":83,"end":92},"obj":"Species"},{"id":"33","span":{"begin":611,"end":620},"obj":"Species"}],"attributes":[{"id":"A29","pred":"tao:has_database_id","subj":"29","obj":"Tax:11118"},{"id":"A30","pred":"tao:has_database_id","subj":"30","obj":"Tax:11118"},{"id":"A31","pred":"tao:has_database_id","subj":"31","obj":"Tax:143291"},{"id":"A32","pred":"tao:has_database_id","subj":"32","obj":"Tax:9408"},{"id":"A33","pred":"tao:has_database_id","subj":"33","obj":"Tax:9408"},{"subj":"29","pred":"source","obj":"LitCovid-PubTator"},{"subj":"30","pred":"source","obj":"LitCovid-PubTator"},{"subj":"31","pred":"source","obj":"LitCovid-PubTator"},{"subj":"32","pred":"source","obj":"LitCovid-PubTator"},{"subj":"33","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T5","span":{"begin":37,"end":39},"obj":"Disease"}],"attributes":[{"id":"A5","pred":"mondo_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/MONDO_0010725"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T13","span":{"begin":37,"end":39},"obj":"http://purl.obolibrary.org/obo/CLO_0008882"},{"id":"T14","span":{"begin":98,"end":102},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T15","span":{"begin":132,"end":133},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T16","span":{"begin":134,"end":137},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9596"},{"id":"T17","span":{"begin":249,"end":253},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T18","span":{"begin":255,"end":256},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T19","span":{"begin":320,"end":323},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T20","span":{"begin":385,"end":386},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T21","span":{"begin":406,"end":409},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T22","span":{"begin":430,"end":436},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T23","span":{"begin":518,"end":522},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T24","span":{"begin":557,"end":560},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"}],"attributes":[{"subj":"T13","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T14","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T15","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T16","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T17","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T18","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T19","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T20","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T21","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T1","span":{"begin":37,"end":39},"obj":"Chemical"}],"attributes":[{"id":"A1","pred":"chebi_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CHEBI_73819"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T1","span":{"begin":142,"end":163},"obj":"http://purl.obolibrary.org/obo/GO_0001171"},{"id":"T2","span":{"begin":150,"end":163},"obj":"http://purl.obolibrary.org/obo/GO_0006351"}],"attributes":[{"subj":"T1","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T8","span":{"begin":0,"end":8},"obj":"Sentence"},{"id":"T9","span":{"begin":9,"end":254},"obj":"Sentence"},{"id":"T10","span":{"begin":255,"end":334},"obj":"Sentence"},{"id":"T11","span":{"begin":335,"end":446},"obj":"Sentence"},{"id":"T12","span":{"begin":447,"end":625},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T8","pred":"source","obj":"LitCovid-sentences"},{"subj":"T9","pred":"source","obj":"LitCovid-sentences"},{"subj":"T10","pred":"source","obj":"LitCovid-sentences"},{"subj":"T11","pred":"source","obj":"LitCovid-sentences"},{"subj":"T12","pred":"source","obj":"LitCovid-sentences"}]},{"project":"Zoonoses_partialAnnotation","denotations":[{"id":"T227","span":{"begin":83,"end":97},"obj":"Species"},{"id":"T228","span":{"begin":611,"end":625},"obj":"Species"}],"attributes":[{"id":"A84","pred":"Memo","subj":"T228","obj":"Tax:2640345"},{"id":"A83","pred":"Memo","subj":"T227","obj":"Tax:2640345"},{"subj":"T227","pred":"source","obj":"Zoonoses_partialAnnotation"},{"subj":"T228","pred":"source","obj":"Zoonoses_partialAnnotation"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#ec939a","default":true},{"id":"LitCovid-PD-UBERON","color":"#93b4ec"},{"id":"LitCovid-PubTator","color":"#ceec93"},{"id":"LitCovid-PD-MONDO","color":"#ec93e8"},{"id":"LitCovid-PD-CLO","color":"#93ecd6"},{"id":"LitCovid-PD-CHEBI","color":"#ecbc93"},{"id":"LitCovid-PD-GO-BP","color":"#a293ec"},{"id":"LitCovid-sentences","color":"#9eec93"},{"id":"Zoonoses_partialAnnotation","color":"#ec93b8"}]}]}}