PMC:7366549 / 17078-17878 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T90","span":{"begin":46,"end":52},"obj":"Body_part"}],"attributes":[{"id":"A90","pred":"fma_id","subj":"T90","obj":"http://purl.org/sig/ont/fma/fma84116"}],"text":"Phylogenetic analysis of partial and complete genome sequences of bat coronavirus: A neighbour-joining tree was generated using the partial RdRp region sequences derived from Pteropus and Rousettus spp. bat specimens. It was observed that all the BtCoV sequences were clustered within the L_D sequences of beta CoVs. A distinct subclustering of the sequences retrieved from Pteropus and Rousettus spp. bats is shown in Figure 1. The sequences in the light pink colour are retrieved from the Pteropus spp., whereas those in the dark pink region belong to Rousettus spp. The sequence divergence of 0.35 was observed between Pteropus spp. and Rousettus spp., which was obtained by averaging over all the sequence pairs between the two species, determining those to be distinct sequences to each species."}

{"project":"LitCovid-PubTator","denotations":[{"id":"254","span":{"begin":66,"end":81},"obj":"Species"},{"id":"255","span":{"begin":311,"end":315},"obj":"Species"},{"id":"256","span":{"begin":175,"end":183},"obj":"Species"},{"id":"257","span":{"begin":188,"end":197},"obj":"Species"},{"id":"258","span":{"begin":374,"end":382},"obj":"Species"},{"id":"259","span":{"begin":387,"end":396},"obj":"Species"},{"id":"260","span":{"begin":491,"end":499},"obj":"Species"},{"id":"261","span":{"begin":554,"end":563},"obj":"Species"},{"id":"262","span":{"begin":622,"end":630},"obj":"Species"},{"id":"263","span":{"begin":640,"end":649},"obj":"Species"}],"attributes":[{"id":"A254","pred":"tao:has_database_id","subj":"254","obj":"Tax:1508220"},{"id":"A255","pred":"tao:has_database_id","subj":"255","obj":"Tax:11118"},{"id":"A256","pred":"tao:has_database_id","subj":"256","obj":"Tax:143291"},{"id":"A257","pred":"tao:has_database_id","subj":"257","obj":"Tax:9408"},{"id":"A258","pred":"tao:has_database_id","subj":"258","obj":"Tax:143291"},{"id":"A259","pred":"tao:has_database_id","subj":"259","obj":"Tax:9408"},{"id":"A260","pred":"tao:has_database_id","subj":"260","obj":"Tax:143291"},{"id":"A261","pred":"tao:has_database_id","subj":"261","obj":"Tax:9408"},{"id":"A262","pred":"tao:has_database_id","subj":"262","obj":"Tax:143291"},{"id":"A263","pred":"tao:has_database_id","subj":"263","obj":"Tax:9408"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Phylogenetic analysis of partial and complete genome sequences of bat coronavirus: A neighbour-joining tree was generated using the partial RdRp region sequences derived from Pteropus and Rousettus spp. bat specimens. It was observed that all the BtCoV sequences were clustered within the L_D sequences of beta CoVs. A distinct subclustering of the sequences retrieved from Pteropus and Rousettus spp. bats is shown in Figure 1. The sequences in the light pink colour are retrieved from the Pteropus spp., whereas those in the dark pink region belong to Rousettus spp. The sequence divergence of 0.35 was observed between Pteropus spp. and Rousettus spp., which was obtained by averaging over all the sequence pairs between the two species, determining those to be distinct sequences to each species."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T227","span":{"begin":66,"end":69},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T228","span":{"begin":83,"end":84},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T229","span":{"begin":203,"end":206},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T230","span":{"begin":317,"end":318},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T231","span":{"begin":402,"end":406},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"}],"text":"Phylogenetic analysis of partial and complete genome sequences of bat coronavirus: A neighbour-joining tree was generated using the partial RdRp region sequences derived from Pteropus and Rousettus spp. bat specimens. It was observed that all the BtCoV sequences were clustered within the L_D sequences of beta CoVs. A distinct subclustering of the sequences retrieved from Pteropus and Rousettus spp. bats is shown in Figure 1. The sequences in the light pink colour are retrieved from the Pteropus spp., whereas those in the dark pink region belong to Rousettus spp. The sequence divergence of 0.35 was observed between Pteropus spp. and Rousettus spp., which was obtained by averaging over all the sequence pairs between the two species, determining those to be distinct sequences to each species."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T60","span":{"begin":306,"end":310},"obj":"Chemical"}],"attributes":[{"id":"A60","pred":"chebi_id","subj":"T60","obj":"http://purl.obolibrary.org/obo/CHEBI_10545"}],"text":"Phylogenetic analysis of partial and complete genome sequences of bat coronavirus: A neighbour-joining tree was generated using the partial RdRp region sequences derived from Pteropus and Rousettus spp. bat specimens. It was observed that all the BtCoV sequences were clustered within the L_D sequences of beta CoVs. A distinct subclustering of the sequences retrieved from Pteropus and Rousettus spp. bats is shown in Figure 1. The sequences in the light pink colour are retrieved from the Pteropus spp., whereas those in the dark pink region belong to Rousettus spp. The sequence divergence of 0.35 was observed between Pteropus spp. and Rousettus spp., which was obtained by averaging over all the sequence pairs between the two species, determining those to be distinct sequences to each species."}

{"project":"LitCovid-sentences","denotations":[{"id":"T143","span":{"begin":83,"end":217},"obj":"Sentence"},{"id":"T144","span":{"begin":218,"end":316},"obj":"Sentence"},{"id":"T145","span":{"begin":317,"end":428},"obj":"Sentence"},{"id":"T146","span":{"begin":429,"end":568},"obj":"Sentence"},{"id":"T147","span":{"begin":569,"end":800},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Phylogenetic analysis of partial and complete genome sequences of bat coronavirus: A neighbour-joining tree was generated using the partial RdRp region sequences derived from Pteropus and Rousettus spp. bat specimens. It was observed that all the BtCoV sequences were clustered within the L_D sequences of beta CoVs. A distinct subclustering of the sequences retrieved from Pteropus and Rousettus spp. bats is shown in Figure 1. The sequences in the light pink colour are retrieved from the Pteropus spp., whereas those in the dark pink region belong to Rousettus spp. The sequence divergence of 0.35 was observed between Pteropus spp. and Rousettus spp., which was obtained by averaging over all the sequence pairs between the two species, determining those to be distinct sequences to each species."}

{"project":"Zoonoses_partialAnnotation","denotations":[{"id":"T236","span":{"begin":188,"end":202},"obj":"Species"},{"id":"T237","span":{"begin":387,"end":401},"obj":"Species"},{"id":"T238","span":{"begin":554,"end":568},"obj":"Species"},{"id":"T239","span":{"begin":640,"end":654},"obj":"Species"}],"attributes":[{"id":"A93","pred":"Memo","subj":"T237","obj":"Tax:2640345"},{"id":"A94","pred":"Memo","subj":"T238","obj":"Tax:2640345"},{"id":"A92","pred":"Memo","subj":"T236","obj":"Tax:2640345"},{"id":"A95","pred":"Memo","subj":"T239","obj":"Tax:2640345"}],"text":"Phylogenetic analysis of partial and complete genome sequences of bat coronavirus: A neighbour-joining tree was generated using the partial RdRp region sequences derived from Pteropus and Rousettus spp. bat specimens. It was observed that all the BtCoV sequences were clustered within the L_D sequences of beta CoVs. A distinct subclustering of the sequences retrieved from Pteropus and Rousettus spp. bats is shown in Figure 1. The sequences in the light pink colour are retrieved from the Pteropus spp., whereas those in the dark pink region belong to Rousettus spp. The sequence divergence of 0.35 was observed between Pteropus spp. and Rousettus spp., which was obtained by averaging over all the sequence pairs between the two species, determining those to be distinct sequences to each species."}