PMC:7366549 / 15727-16576 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T69","span":{"begin":91,"end":97},"obj":"Body_part"},{"id":"T70","span":{"begin":102,"end":111},"obj":"Body_part"},{"id":"T71","span":{"begin":112,"end":119},"obj":"Body_part"},{"id":"T72","span":{"begin":148,"end":154},"obj":"Body_part"},{"id":"T73","span":{"begin":167,"end":170},"obj":"Body_part"},{"id":"T74","span":{"begin":304,"end":313},"obj":"Body_part"},{"id":"T75","span":{"begin":314,"end":320},"obj":"Body_part"},{"id":"T76","span":{"begin":328,"end":331},"obj":"Body_part"},{"id":"T77","span":{"begin":445,"end":454},"obj":"Body_part"},{"id":"T78","span":{"begin":455,"end":461},"obj":"Body_part"},{"id":"T79","span":{"begin":469,"end":472},"obj":"Body_part"},{"id":"T80","span":{"begin":698,"end":707},"obj":"Body_part"},{"id":"T81","span":{"begin":724,"end":727},"obj":"Body_part"},{"id":"T82","span":{"begin":759,"end":765},"obj":"Body_part"}],"attributes":[{"id":"A69","pred":"fma_id","subj":"T69","obj":"http://purl.org/sig/ont/fma/fma7203"},{"id":"A70","pred":"fma_id","subj":"T70","obj":"http://purl.org/sig/ont/fma/fma7199"},{"id":"A71","pred":"fma_id","subj":"T71","obj":"http://purl.org/sig/ont/fma/fma9637"},{"id":"A72","pred":"fma_id","subj":"T72","obj":"http://purl.org/sig/ont/fma/fma7203"},{"id":"A73","pred":"fma_id","subj":"T73","obj":"http://purl.org/sig/ont/fma/fma305650"},{"id":"A74","pred":"fma_id","subj":"T74","obj":"http://purl.org/sig/ont/fma/fma7199"},{"id":"A75","pred":"fma_id","subj":"T75","obj":"http://purl.org/sig/ont/fma/fma9637"},{"id":"A76","pred":"fma_id","subj":"T76","obj":"http://purl.org/sig/ont/fma/fma305650"},{"id":"A77","pred":"fma_id","subj":"T77","obj":"http://purl.org/sig/ont/fma/fma7199"},{"id":"A78","pred":"fma_id","subj":"T78","obj":"http://purl.org/sig/ont/fma/fma9637"},{"id":"A79","pred":"fma_id","subj":"T79","obj":"http://purl.org/sig/ont/fma/fma305650"},{"id":"A80","pred":"fma_id","subj":"T80","obj":"http://purl.org/sig/ont/fma/fma7199"},{"id":"A81","pred":"fma_id","subj":"T81","obj":"http://purl.org/sig/ont/fma/fma305650"},{"id":"A82","pred":"fma_id","subj":"T82","obj":"http://purl.org/sig/ont/fma/fma84116"}],"text":"Two different viruses were retrieved based on the BLAST analysis of the sequences from the kidney and intestine tissues of the bats from Karnataka. Kidney specimen of MCL-20-Bat-76 had an SI of 94 per cent and query coverage (QC) of 94 per cent with CoV BtRt-BetaCoV/GX2018 (AN: MK211379.1), whereas the intestine tissue of the MCL-20-Bat-76 had an SI of 96.8 and 95 per cent QC with the BtCoV HKU9-1 (AN: EF065513.1). The sequences from RS and intestine tissue of the MCL-19-Bat-606 from Kerala, had 93.69 and 93.99 per cent SI to CoV BtRt-BetaCoV/GX2018 (AN: MK211379.1), respectively, with 100 per cent QC. Further, 99.8 per cent of the CoV BtRt-BetaCoV/GX2018 sequences were retrieved from the intestine specimen of the MCL-19-Bat-606. The details of the genome recovered reads mapped and the per cent of reads mapped are summarized in Table II."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T18","span":{"begin":91,"end":97},"obj":"Body_part"},{"id":"T19","span":{"begin":102,"end":111},"obj":"Body_part"},{"id":"T20","span":{"begin":148,"end":154},"obj":"Body_part"},{"id":"T21","span":{"begin":304,"end":313},"obj":"Body_part"},{"id":"T22","span":{"begin":314,"end":320},"obj":"Body_part"},{"id":"T23","span":{"begin":445,"end":454},"obj":"Body_part"},{"id":"T24","span":{"begin":455,"end":461},"obj":"Body_part"},{"id":"T25","span":{"begin":698,"end":707},"obj":"Body_part"}],"attributes":[{"id":"A18","pred":"uberon_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/UBERON_0002113"},{"id":"A19","pred":"uberon_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/UBERON_0000160"},{"id":"A20","pred":"uberon_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/UBERON_0002113"},{"id":"A21","pred":"uberon_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/UBERON_0000160"},{"id":"A22","pred":"uberon_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/UBERON_0000479"},{"id":"A23","pred":"uberon_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/UBERON_0000160"},{"id":"A24","pred":"uberon_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/UBERON_0000479"},{"id":"A25","pred":"uberon_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/UBERON_0000160"}],"text":"Two different viruses were retrieved based on the BLAST analysis of the sequences from the kidney and intestine tissues of the bats from Karnataka. Kidney specimen of MCL-20-Bat-76 had an SI of 94 per cent and query coverage (QC) of 94 per cent with CoV BtRt-BetaCoV/GX2018 (AN: MK211379.1), whereas the intestine tissue of the MCL-20-Bat-76 had an SI of 96.8 and 95 per cent QC with the BtCoV HKU9-1 (AN: EF065513.1). The sequences from RS and intestine tissue of the MCL-19-Bat-606 from Kerala, had 93.69 and 93.99 per cent SI to CoV BtRt-BetaCoV/GX2018 (AN: MK211379.1), respectively, with 100 per cent QC. Further, 99.8 per cent of the CoV BtRt-BetaCoV/GX2018 sequences were retrieved from the intestine specimen of the MCL-19-Bat-606. The details of the genome recovered reads mapped and the per cent of reads mapped are summarized in Table II."}

{"project":"LitCovid-PubTator","denotations":[{"id":"230","span":{"begin":250,"end":253},"obj":"Species"},{"id":"231","span":{"begin":259,"end":266},"obj":"Species"},{"id":"232","span":{"begin":532,"end":535},"obj":"Species"},{"id":"233","span":{"begin":541,"end":548},"obj":"Species"},{"id":"234","span":{"begin":640,"end":643},"obj":"Species"},{"id":"235","span":{"begin":649,"end":656},"obj":"Species"}],"attributes":[{"id":"A230","pred":"tao:has_database_id","subj":"230","obj":"Tax:11118"},{"id":"A231","pred":"tao:has_database_id","subj":"231","obj":"Tax:694002"},{"id":"A232","pred":"tao:has_database_id","subj":"232","obj":"Tax:11118"},{"id":"A233","pred":"tao:has_database_id","subj":"233","obj":"Tax:694002"},{"id":"A234","pred":"tao:has_database_id","subj":"234","obj":"Tax:11118"},{"id":"A235","pred":"tao:has_database_id","subj":"235","obj":"Tax:694002"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Two different viruses were retrieved based on the BLAST analysis of the sequences from the kidney and intestine tissues of the bats from Karnataka. Kidney specimen of MCL-20-Bat-76 had an SI of 94 per cent and query coverage (QC) of 94 per cent with CoV BtRt-BetaCoV/GX2018 (AN: MK211379.1), whereas the intestine tissue of the MCL-20-Bat-76 had an SI of 96.8 and 95 per cent QC with the BtCoV HKU9-1 (AN: EF065513.1). The sequences from RS and intestine tissue of the MCL-19-Bat-606 from Kerala, had 93.69 and 93.99 per cent SI to CoV BtRt-BetaCoV/GX2018 (AN: MK211379.1), respectively, with 100 per cent QC. Further, 99.8 per cent of the CoV BtRt-BetaCoV/GX2018 sequences were retrieved from the intestine specimen of the MCL-19-Bat-606. The details of the genome recovered reads mapped and the per cent of reads mapped are summarized in Table II."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T48","span":{"begin":438,"end":440},"obj":"Disease"}],"attributes":[{"id":"A48","pred":"mondo_id","subj":"T48","obj":"http://purl.obolibrary.org/obo/MONDO_0010725"}],"text":"Two different viruses were retrieved based on the BLAST analysis of the sequences from the kidney and intestine tissues of the bats from Karnataka. Kidney specimen of MCL-20-Bat-76 had an SI of 94 per cent and query coverage (QC) of 94 per cent with CoV BtRt-BetaCoV/GX2018 (AN: MK211379.1), whereas the intestine tissue of the MCL-20-Bat-76 had an SI of 96.8 and 95 per cent QC with the BtCoV HKU9-1 (AN: EF065513.1). The sequences from RS and intestine tissue of the MCL-19-Bat-606 from Kerala, had 93.69 and 93.99 per cent SI to CoV BtRt-BetaCoV/GX2018 (AN: MK211379.1), respectively, with 100 per cent QC. Further, 99.8 per cent of the CoV BtRt-BetaCoV/GX2018 sequences were retrieved from the intestine specimen of the MCL-19-Bat-606. The details of the genome recovered reads mapped and the per cent of reads mapped are summarized in Table II."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T197","span":{"begin":14,"end":21},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T198","span":{"begin":91,"end":97},"obj":"http://purl.obolibrary.org/obo/UBERON_0002113"},{"id":"T199","span":{"begin":91,"end":97},"obj":"http://www.ebi.ac.uk/efo/EFO_0000927"},{"id":"T200","span":{"begin":91,"end":97},"obj":"http://www.ebi.ac.uk/efo/EFO_0000929"},{"id":"T201","span":{"begin":102,"end":111},"obj":"http://purl.obolibrary.org/obo/UBERON_0000160"},{"id":"T202","span":{"begin":102,"end":111},"obj":"http://www.ebi.ac.uk/efo/EFO_0000834"},{"id":"T203","span":{"begin":127,"end":131},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T204","span":{"begin":148,"end":154},"obj":"http://purl.obolibrary.org/obo/UBERON_0002113"},{"id":"T205","span":{"begin":148,"end":154},"obj":"http://www.ebi.ac.uk/efo/EFO_0000927"},{"id":"T206","span":{"begin":148,"end":154},"obj":"http://www.ebi.ac.uk/efo/EFO_0000929"},{"id":"T207","span":{"begin":194,"end":196},"obj":"http://purl.obolibrary.org/obo/CLO_0001527"},{"id":"T208","span":{"begin":233,"end":235},"obj":"http://purl.obolibrary.org/obo/CLO_0001527"},{"id":"T209","span":{"begin":304,"end":313},"obj":"http://purl.obolibrary.org/obo/UBERON_0000160"},{"id":"T210","span":{"begin":304,"end":313},"obj":"http://www.ebi.ac.uk/efo/EFO_0000834"},{"id":"T211","span":{"begin":438,"end":440},"obj":"http://purl.obolibrary.org/obo/CLO_0008882"},{"id":"T212","span":{"begin":445,"end":454},"obj":"http://purl.obolibrary.org/obo/UBERON_0000160"},{"id":"T213","span":{"begin":445,"end":454},"obj":"http://www.ebi.ac.uk/efo/EFO_0000834"},{"id":"T214","span":{"begin":698,"end":707},"obj":"http://purl.obolibrary.org/obo/UBERON_0000160"},{"id":"T215","span":{"begin":698,"end":707},"obj":"http://www.ebi.ac.uk/efo/EFO_0000834"}],"text":"Two different viruses were retrieved based on the BLAST analysis of the sequences from the kidney and intestine tissues of the bats from Karnataka. Kidney specimen of MCL-20-Bat-76 had an SI of 94 per cent and query coverage (QC) of 94 per cent with CoV BtRt-BetaCoV/GX2018 (AN: MK211379.1), whereas the intestine tissue of the MCL-20-Bat-76 had an SI of 96.8 and 95 per cent QC with the BtCoV HKU9-1 (AN: EF065513.1). The sequences from RS and intestine tissue of the MCL-19-Bat-606 from Kerala, had 93.69 and 93.99 per cent SI to CoV BtRt-BetaCoV/GX2018 (AN: MK211379.1), respectively, with 100 per cent QC. Further, 99.8 per cent of the CoV BtRt-BetaCoV/GX2018 sequences were retrieved from the intestine specimen of the MCL-19-Bat-606. The details of the genome recovered reads mapped and the per cent of reads mapped are summarized in Table II."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T54","span":{"begin":188,"end":190},"obj":"Chemical"},{"id":"T55","span":{"begin":349,"end":351},"obj":"Chemical"},{"id":"T56","span":{"begin":438,"end":440},"obj":"Chemical"},{"id":"T57","span":{"begin":526,"end":528},"obj":"Chemical"},{"id":"T58","span":{"begin":846,"end":848},"obj":"Chemical"}],"attributes":[{"id":"A54","pred":"chebi_id","subj":"T54","obj":"http://purl.obolibrary.org/obo/CHEBI_90326"},{"id":"A55","pred":"chebi_id","subj":"T55","obj":"http://purl.obolibrary.org/obo/CHEBI_90326"},{"id":"A56","pred":"chebi_id","subj":"T56","obj":"http://purl.obolibrary.org/obo/CHEBI_73819"},{"id":"A57","pred":"chebi_id","subj":"T57","obj":"http://purl.obolibrary.org/obo/CHEBI_90326"},{"id":"A58","pred":"chebi_id","subj":"T58","obj":"http://purl.obolibrary.org/obo/CHEBI_74067"}],"text":"Two different viruses were retrieved based on the BLAST analysis of the sequences from the kidney and intestine tissues of the bats from Karnataka. Kidney specimen of MCL-20-Bat-76 had an SI of 94 per cent and query coverage (QC) of 94 per cent with CoV BtRt-BetaCoV/GX2018 (AN: MK211379.1), whereas the intestine tissue of the MCL-20-Bat-76 had an SI of 96.8 and 95 per cent QC with the BtCoV HKU9-1 (AN: EF065513.1). The sequences from RS and intestine tissue of the MCL-19-Bat-606 from Kerala, had 93.69 and 93.99 per cent SI to CoV BtRt-BetaCoV/GX2018 (AN: MK211379.1), respectively, with 100 per cent QC. Further, 99.8 per cent of the CoV BtRt-BetaCoV/GX2018 sequences were retrieved from the intestine specimen of the MCL-19-Bat-606. The details of the genome recovered reads mapped and the per cent of reads mapped are summarized in Table II."}

{"project":"LitCovid-sentences","denotations":[{"id":"T132","span":{"begin":0,"end":147},"obj":"Sentence"},{"id":"T133","span":{"begin":148,"end":418},"obj":"Sentence"},{"id":"T134","span":{"begin":419,"end":609},"obj":"Sentence"},{"id":"T135","span":{"begin":610,"end":739},"obj":"Sentence"},{"id":"T136","span":{"begin":740,"end":849},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Two different viruses were retrieved based on the BLAST analysis of the sequences from the kidney and intestine tissues of the bats from Karnataka. Kidney specimen of MCL-20-Bat-76 had an SI of 94 per cent and query coverage (QC) of 94 per cent with CoV BtRt-BetaCoV/GX2018 (AN: MK211379.1), whereas the intestine tissue of the MCL-20-Bat-76 had an SI of 96.8 and 95 per cent QC with the BtCoV HKU9-1 (AN: EF065513.1). The sequences from RS and intestine tissue of the MCL-19-Bat-606 from Kerala, had 93.69 and 93.99 per cent SI to CoV BtRt-BetaCoV/GX2018 (AN: MK211379.1), respectively, with 100 per cent QC. Further, 99.8 per cent of the CoV BtRt-BetaCoV/GX2018 sequences were retrieved from the intestine specimen of the MCL-19-Bat-606. The details of the genome recovered reads mapped and the per cent of reads mapped are summarized in Table II."}

{"project":"Zoonoses_partialAnnotation","denotations":[{"id":"T142","span":{"begin":137,"end":146},"obj":"Area"},{"id":"T158","span":{"begin":489,"end":495},"obj":"Area"}],"attributes":[{"id":"A9","pred":"Memo","subj":"T142","obj":"MESH:D007194"},{"id":"A25","pred":"Memo","subj":"T158","obj":"MESH:D007194"}],"text":"Two different viruses were retrieved based on the BLAST analysis of the sequences from the kidney and intestine tissues of the bats from Karnataka. Kidney specimen of MCL-20-Bat-76 had an SI of 94 per cent and query coverage (QC) of 94 per cent with CoV BtRt-BetaCoV/GX2018 (AN: MK211379.1), whereas the intestine tissue of the MCL-20-Bat-76 had an SI of 96.8 and 95 per cent QC with the BtCoV HKU9-1 (AN: EF065513.1). The sequences from RS and intestine tissue of the MCL-19-Bat-606 from Kerala, had 93.69 and 93.99 per cent SI to CoV BtRt-BetaCoV/GX2018 (AN: MK211379.1), respectively, with 100 per cent QC. Further, 99.8 per cent of the CoV BtRt-BetaCoV/GX2018 sequences were retrieved from the intestine specimen of the MCL-19-Bat-606. The details of the genome recovered reads mapped and the per cent of reads mapped are summarized in Table II."}