PMC:7366549 / 1319-2059 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T8","span":{"begin":157,"end":161},"obj":"Body_part"},{"id":"T9","span":{"begin":550,"end":556},"obj":"Body_part"}],"attributes":[{"id":"A8","pred":"fma_id","subj":"T8","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A9","pred":"fma_id","subj":"T9","obj":"http://purl.org/sig/ont/fma/fma84116"}],"text":"Results:\nBat samples from the seven States were screened, and the RS specimens of eight Rousettus spp. and 21 Pteropus spp. were found positive for CoV RdRp gene. Among these, by Sanger sequencing, partial RdRp sequences could be retrieved from three Rousettus and eight Pteropus bat specimens. Phylogenetic analysis of the partial RdRp region demonstrated distinct subclustering of the BtCoV sequences retrieved from these Rousettus and Pteropus spp. bats. NGS led to the recovery of four sequences covering approximately 94.3 per cent of the whole genome of the BtCoVs from Rousettus bats. Three BtCoV sequences had 93.69 per cent identity to CoV BtRt-BetaCoV/GX2018. The fourth BtCoV sequence was 96.8 per cent identical to BtCoV HKU9-1."}

{"project":"LitCovid-PubTator","denotations":[{"id":"44","span":{"begin":148,"end":151},"obj":"Species"},{"id":"45","span":{"begin":645,"end":648},"obj":"Species"},{"id":"46","span":{"begin":654,"end":661},"obj":"Species"},{"id":"47","span":{"begin":88,"end":97},"obj":"Species"},{"id":"48","span":{"begin":110,"end":118},"obj":"Species"},{"id":"49","span":{"begin":251,"end":260},"obj":"Species"},{"id":"50","span":{"begin":271,"end":279},"obj":"Species"},{"id":"51","span":{"begin":424,"end":433},"obj":"Species"},{"id":"52","span":{"begin":438,"end":446},"obj":"Species"},{"id":"53","span":{"begin":576,"end":585},"obj":"Species"}],"attributes":[{"id":"A44","pred":"tao:has_database_id","subj":"44","obj":"Tax:11118"},{"id":"A45","pred":"tao:has_database_id","subj":"45","obj":"Tax:11118"},{"id":"A46","pred":"tao:has_database_id","subj":"46","obj":"Tax:694002"},{"id":"A47","pred":"tao:has_database_id","subj":"47","obj":"Tax:9408"},{"id":"A48","pred":"tao:has_database_id","subj":"48","obj":"Tax:143291"},{"id":"A49","pred":"tao:has_database_id","subj":"49","obj":"Tax:9408"},{"id":"A50","pred":"tao:has_database_id","subj":"50","obj":"Tax:143291"},{"id":"A51","pred":"tao:has_database_id","subj":"51","obj":"Tax:9408"},{"id":"A52","pred":"tao:has_database_id","subj":"52","obj":"Tax:143291"},{"id":"A53","pred":"tao:has_database_id","subj":"53","obj":"Tax:9408"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Results:\nBat samples from the seven States were screened, and the RS specimens of eight Rousettus spp. and 21 Pteropus spp. were found positive for CoV RdRp gene. Among these, by Sanger sequencing, partial RdRp sequences could be retrieved from three Rousettus and eight Pteropus bat specimens. Phylogenetic analysis of the partial RdRp region demonstrated distinct subclustering of the BtCoV sequences retrieved from these Rousettus and Pteropus spp. bats. NGS led to the recovery of four sequences covering approximately 94.3 per cent of the whole genome of the BtCoVs from Rousettus bats. Three BtCoV sequences had 93.69 per cent identity to CoV BtRt-BetaCoV/GX2018. The fourth BtCoV sequence was 96.8 per cent identical to BtCoV HKU9-1."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T6","span":{"begin":66,"end":68},"obj":"Disease"}],"attributes":[{"id":"A6","pred":"mondo_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/MONDO_0010725"}],"text":"Results:\nBat samples from the seven States were screened, and the RS specimens of eight Rousettus spp. and 21 Pteropus spp. were found positive for CoV RdRp gene. Among these, by Sanger sequencing, partial RdRp sequences could be retrieved from three Rousettus and eight Pteropus bat specimens. Phylogenetic analysis of the partial RdRp region demonstrated distinct subclustering of the BtCoV sequences retrieved from these Rousettus and Pteropus spp. bats. NGS led to the recovery of four sequences covering approximately 94.3 per cent of the whole genome of the BtCoVs from Rousettus bats. Three BtCoV sequences had 93.69 per cent identity to CoV BtRt-BetaCoV/GX2018. The fourth BtCoV sequence was 96.8 per cent identical to BtCoV HKU9-1."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T25","span":{"begin":66,"end":68},"obj":"http://purl.obolibrary.org/obo/CLO_0008882"},{"id":"T26","span":{"begin":157,"end":161},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T27","span":{"begin":280,"end":283},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T28","span":{"begin":452,"end":456},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T29","span":{"begin":586,"end":590},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"}],"text":"Results:\nBat samples from the seven States were screened, and the RS specimens of eight Rousettus spp. and 21 Pteropus spp. were found positive for CoV RdRp gene. Among these, by Sanger sequencing, partial RdRp sequences could be retrieved from three Rousettus and eight Pteropus bat specimens. Phylogenetic analysis of the partial RdRp region demonstrated distinct subclustering of the BtCoV sequences retrieved from these Rousettus and Pteropus spp. bats. NGS led to the recovery of four sequences covering approximately 94.3 per cent of the whole genome of the BtCoVs from Rousettus bats. Three BtCoV sequences had 93.69 per cent identity to CoV BtRt-BetaCoV/GX2018. The fourth BtCoV sequence was 96.8 per cent identical to BtCoV HKU9-1."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T2","span":{"begin":66,"end":68},"obj":"Chemical"}],"attributes":[{"id":"A2","pred":"chebi_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CHEBI_73819"}],"text":"Results:\nBat samples from the seven States were screened, and the RS specimens of eight Rousettus spp. and 21 Pteropus spp. were found positive for CoV RdRp gene. Among these, by Sanger sequencing, partial RdRp sequences could be retrieved from three Rousettus and eight Pteropus bat specimens. Phylogenetic analysis of the partial RdRp region demonstrated distinct subclustering of the BtCoV sequences retrieved from these Rousettus and Pteropus spp. bats. NGS led to the recovery of four sequences covering approximately 94.3 per cent of the whole genome of the BtCoVs from Rousettus bats. Three BtCoV sequences had 93.69 per cent identity to CoV BtRt-BetaCoV/GX2018. The fourth BtCoV sequence was 96.8 per cent identical to BtCoV HKU9-1."}

{"project":"LitCovid-sentences","denotations":[{"id":"T13","span":{"begin":0,"end":8},"obj":"Sentence"},{"id":"T14","span":{"begin":9,"end":162},"obj":"Sentence"},{"id":"T15","span":{"begin":163,"end":294},"obj":"Sentence"},{"id":"T16","span":{"begin":295,"end":457},"obj":"Sentence"},{"id":"T17","span":{"begin":458,"end":591},"obj":"Sentence"},{"id":"T18","span":{"begin":592,"end":669},"obj":"Sentence"},{"id":"T19","span":{"begin":670,"end":740},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Results:\nBat samples from the seven States were screened, and the RS specimens of eight Rousettus spp. and 21 Pteropus spp. were found positive for CoV RdRp gene. Among these, by Sanger sequencing, partial RdRp sequences could be retrieved from three Rousettus and eight Pteropus bat specimens. Phylogenetic analysis of the partial RdRp region demonstrated distinct subclustering of the BtCoV sequences retrieved from these Rousettus and Pteropus spp. bats. NGS led to the recovery of four sequences covering approximately 94.3 per cent of the whole genome of the BtCoVs from Rousettus bats. Three BtCoV sequences had 93.69 per cent identity to CoV BtRt-BetaCoV/GX2018. The fourth BtCoV sequence was 96.8 per cent identical to BtCoV HKU9-1."}

{"project":"Zoonoses_partialAnnotation","denotations":[{"id":"T229","span":{"begin":88,"end":102},"obj":"Species"}],"attributes":[{"id":"A85","pred":"Memo","subj":"T229","obj":"Tax:2640345"}],"text":"Results:\nBat samples from the seven States were screened, and the RS specimens of eight Rousettus spp. and 21 Pteropus spp. were found positive for CoV RdRp gene. Among these, by Sanger sequencing, partial RdRp sequences could be retrieved from three Rousettus and eight Pteropus bat specimens. Phylogenetic analysis of the partial RdRp region demonstrated distinct subclustering of the BtCoV sequences retrieved from these Rousettus and Pteropus spp. bats. NGS led to the recovery of four sequences covering approximately 94.3 per cent of the whole genome of the BtCoVs from Rousettus bats. Three BtCoV sequences had 93.69 per cent identity to CoV BtRt-BetaCoV/GX2018. The fourth BtCoV sequence was 96.8 per cent identical to BtCoV HKU9-1."}