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PMC:7361216 / 7064-8033 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T84 54-61 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T85 134-141 Body_part denotes mannose http://purl.org/sig/ont/fma/fma82801
T86 318-331 Body_part denotes carbohydrates http://purl.org/sig/ont/fma/fma82737
T87 367-374 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T88 477-489 Body_part denotes carbohydrate http://purl.org/sig/ont/fma/fma82737
T89 633-645 Body_part denotes carbohydrate http://purl.org/sig/ont/fma/fma82737
T90 784-799 Body_part denotes polysaccharides http://purl.org/sig/ont/fma/fma82746
T91 877-891 Body_part denotes polysaccharide http://purl.org/sig/ont/fma/fma82746
T92 932-944 Body_part denotes carbohydrate http://purl.org/sig/ont/fma/fma82737

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T18 548-556 Disease denotes COViD‐19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T92 72-74 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T93 280-281 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T94 336-337 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T95 386-387 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T96 414-415 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T97 467-468 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T98 666-667 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T99 895-896 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T52 54-61 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T53 134-141 Chemical denotes mannose http://purl.obolibrary.org/obo/CHEBI_37684
T54 167-174 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T55 318-331 Chemical denotes carbohydrates http://purl.obolibrary.org/obo/CHEBI_16646
T56 367-374 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T57 388-395 Chemical denotes carrier http://purl.obolibrary.org/obo/CHEBI_78059
T58 396-404 Chemical denotes molecule http://purl.obolibrary.org/obo/CHEBI_25367
T59 477-489 Chemical denotes carbohydrate http://purl.obolibrary.org/obo/CHEBI_16646
T60 574-585 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T61 633-645 Chemical denotes carbohydrate http://purl.obolibrary.org/obo/CHEBI_16646
T62 668-675 Chemical denotes carrier http://purl.obolibrary.org/obo/CHEBI_78059
T63 784-799 Chemical denotes polysaccharides http://purl.obolibrary.org/obo/CHEBI_18154
T64 877-891 Chemical denotes polysaccharide http://purl.obolibrary.org/obo/CHEBI_18154
T65 906-913 Chemical denotes carrier http://purl.obolibrary.org/obo/CHEBI_78059
T66 932-944 Chemical denotes carbohydrate http://purl.obolibrary.org/obo/CHEBI_16646

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T28 90-95 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites
T29 202-207 http://purl.obolibrary.org/obo/BFO_0000029 denotes sites

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T47 54-61 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T48 134-141 Chemical denotes mannose http://purl.obolibrary.org/obo/CHEBI_37684
T49 167-174 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T50 318-331 Chemical denotes carbohydrates http://purl.obolibrary.org/obo/CHEBI_16646
T51 367-374 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T52 439-444 Chemical denotes PPSGG http://purl.obolibrary.org/obo/CHEBI_137080
T53 477-489 Chemical denotes carbohydrate http://purl.obolibrary.org/obo/CHEBI_16646
T54 574-585 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T55 633-645 Chemical denotes carbohydrate http://purl.obolibrary.org/obo/CHEBI_16646
T56 784-799 Chemical denotes polysaccharides http://purl.obolibrary.org/obo/CHEBI_18154
T57 877-891 Chemical denotes polysaccharide http://purl.obolibrary.org/obo/CHEBI_18154
T58 932-944 Chemical denotes carbohydrate http://purl.obolibrary.org/obo/CHEBI_16646

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T21 548-556 Species denotes COViD‐19 NCBItxid:2697049

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T44 0-121 Sentence denotes In the so‐called receptor‐binding domain of the spike protein there are 22 glycan‐binding sites (Shahajan, Supekar et al.
T45 122-128 Sentence denotes 2020).
T46 129-252 Sentence denotes High mannose, hybrid and complex‐type glycans across the N‐glycosylation sites have been identified with mass spectrometry.
T47 253-461 Sentence denotes One could imagine building a therapeutic which might contain the carbohydrates, or a suitable mimic, of the spike protein coupled to a carrier molecule, much in a similar fashion to how PPSGG was constructed.
T48 462-613 Sentence denotes Such a “decoy” carbohydrate could block the binding and subsequent internalization of COViD‐19 to its receptor, angiotensin converting enzyme‐2 (ACE2).
T49 614-715 Sentence denotes In addition, spike carbohydrate clusters coupled to a carrier might proof to be an effective vaccine.
T50 716-848 Sentence denotes Both the pneumococcal vaccine and the meningococcal vaccines target polysaccharides in pneumococcus and meningococcus, respectively.
T51 849-969 Sentence denotes They couple the appropriate polysaccharide to a suitable carrier to achieve potent carbohydrate‐specific immunogenicity.

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
212 48-53 Gene denotes spike Gene:43740568
217 75-81 Chemical denotes glycan MESH:D011134
218 134-141 Chemical denotes mannose MESH:D008358
219 167-174 Chemical denotes glycans MESH:D011134
220 186-187 Chemical denotes N MESH:D009584
221 318-331 Chemical denotes carbohydrates MESH:D002241
213 361-366 Gene denotes spike Gene:43740568
222 439-444 Chemical denotes PPSGG
223 470-489 Chemical denotes decoy” carbohydrate
228 548-556 Disease denotes COViD‐19 MESH:C000657245
214 574-605 Gene denotes angiotensin converting enzyme‐2 Gene:59272
215 607-611 Gene denotes ACE2 Gene:59272
216 627-632 Gene denotes spike Gene:43740568
224 633-645 Chemical denotes carbohydrate MESH:D002241
229 725-737 Disease denotes pneumococcal MESH:D011008
230 754-767 Disease denotes meningococcal MESH:D008589
225 784-799 Chemical denotes polysaccharides MESH:D011134
231 803-833 Disease denotes pneumococcus and meningococcus
226 877-891 Chemical denotes polysaccharide MESH:D011134
227 932-944 Chemical denotes carbohydrate MESH:D002241

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T71 48-61 Protein denotes spike protein https://www.uniprot.org/uniprot/P31340
T72 361-374 Protein denotes spike protein https://www.uniprot.org/uniprot/P31340
T73 574-605 Protein denotes angiotensin converting enzyme‐2 https://www.uniprot.org/uniprot/Q9UFZ6|https://www.uniprot.org/uniprot/Q9NRA7|https://www.uniprot.org/uniprot/Q9BYF1|https://www.uniprot.org/uniprot/Q99N71|https://www.uniprot.org/uniprot/Q99N70|https://www.uniprot.org/uniprot/Q8R0I0|https://www.uniprot.org/uniprot/Q86WT0|https://www.uniprot.org/uniprot/Q6UWP0|https://www.uniprot.org/uniprot/Q5RFN1|https://www.uniprot.org/uniprot/Q5EGZ1|https://www.uniprot.org/uniprot/Q58DD0|https://www.uniprot.org/uniprot/Q56NL1|https://www.uniprot.org/uniprot/Q56H28|https://www.uniprot.org/uniprot/Q2PGE2|https://www.uniprot.org/uniprot/C7ECU1
T88 607-611 Protein denotes ACE2 https://www.uniprot.org/uniprot/Q9UFZ6

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T84 54-61 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T85 134-141 Body_part denotes mannose http://purl.org/sig/ont/fma/fma82801
T86 318-331 Body_part denotes carbohydrates http://purl.org/sig/ont/fma/fma82737
T87 367-374 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T88 477-489 Body_part denotes carbohydrate http://purl.org/sig/ont/fma/fma82737
T89 633-645 Body_part denotes carbohydrate http://purl.org/sig/ont/fma/fma82737
T90 784-799 Body_part denotes polysaccharides http://purl.org/sig/ont/fma/fma82746
T91 877-891 Body_part denotes polysaccharide http://purl.org/sig/ont/fma/fma82746
T92 932-944 Body_part denotes carbohydrate http://purl.org/sig/ont/fma/fma82737

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T5 188-201 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T21 548-556 Disease denotes COViD‐19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T6 188-201 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T6 186-201 http://purl.obolibrary.org/obo/GO_0006487 denotes N‐glycosylation
T7 188-201 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T44 0-121 Sentence denotes In the so‐called receptor‐binding domain of the spike protein there are 22 glycan‐binding sites (Shahajan, Supekar et al.
T45 122-128 Sentence denotes 2020).
T46 129-252 Sentence denotes High mannose, hybrid and complex‐type glycans across the N‐glycosylation sites have been identified with mass spectrometry.
T47 253-461 Sentence denotes One could imagine building a therapeutic which might contain the carbohydrates, or a suitable mimic, of the spike protein coupled to a carrier molecule, much in a similar fashion to how PPSGG was constructed.
T48 462-613 Sentence denotes Such a “decoy” carbohydrate could block the binding and subsequent internalization of COViD‐19 to its receptor, angiotensin converting enzyme‐2 (ACE2).
T49 614-715 Sentence denotes In addition, spike carbohydrate clusters coupled to a carrier might proof to be an effective vaccine.
T50 716-848 Sentence denotes Both the pneumococcal vaccine and the meningococcal vaccines target polysaccharides in pneumococcus and meningococcus, respectively.
T51 849-969 Sentence denotes They couple the appropriate polysaccharide to a suitable carrier to achieve potent carbohydrate‐specific immunogenicity.

LitCovid-sample-Glycan

Id Subject Object Predicate Lexical cue
T2 134-141 http://rdf.glyconavi.org/CarTNa/CarTNa218/trivialname denotes mannose

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
212 48-53 Gene denotes spike Gene:43740568
213 361-366 Gene denotes spike Gene:43740568
214 574-605 Gene denotes angiotensin converting enzyme‐2 Gene:59272
215 607-611 Gene denotes ACE2 Gene:59272
216 627-632 Gene denotes spike Gene:43740568
217 75-81 Chemical denotes glycan MESH:D011134
218 134-141 Chemical denotes mannose MESH:D008358
219 167-174 Chemical denotes glycans MESH:D011134
220 186-187 Chemical denotes N MESH:D009584
221 318-331 Chemical denotes carbohydrates MESH:D002241
222 439-444 Chemical denotes PPSGG
223 470-489 Chemical denotes decoy” carbohydrate
224 633-645 Chemical denotes carbohydrate MESH:D002241
225 784-799 Chemical denotes polysaccharides MESH:D011134
226 877-891 Chemical denotes polysaccharide MESH:D011134
227 932-944 Chemical denotes carbohydrate MESH:D002241
228 548-556 Disease denotes COViD‐19 MESH:C000657245
229 725-737 Disease denotes pneumococcal MESH:D011008
230 754-767 Disease denotes meningococcal MESH:D008589
231 803-833 Disease denotes pneumococcus and meningococcus