PMC:7361216 / 7064-8033
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T84 | 54-61 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T85 | 134-141 | Body_part | denotes | mannose | http://purl.org/sig/ont/fma/fma82801 |
T86 | 318-331 | Body_part | denotes | carbohydrates | http://purl.org/sig/ont/fma/fma82737 |
T87 | 367-374 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T88 | 477-489 | Body_part | denotes | carbohydrate | http://purl.org/sig/ont/fma/fma82737 |
T89 | 633-645 | Body_part | denotes | carbohydrate | http://purl.org/sig/ont/fma/fma82737 |
T90 | 784-799 | Body_part | denotes | polysaccharides | http://purl.org/sig/ont/fma/fma82746 |
T91 | 877-891 | Body_part | denotes | polysaccharide | http://purl.org/sig/ont/fma/fma82746 |
T92 | 932-944 | Body_part | denotes | carbohydrate | http://purl.org/sig/ont/fma/fma82737 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T18 | 548-556 | Disease | denotes | COViD‐19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T92 | 72-74 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
T93 | 280-281 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T94 | 336-337 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T95 | 386-387 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T96 | 414-415 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T97 | 467-468 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T98 | 666-667 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T99 | 895-896 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T52 | 54-61 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T53 | 134-141 | Chemical | denotes | mannose | http://purl.obolibrary.org/obo/CHEBI_37684 |
T54 | 167-174 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
T55 | 318-331 | Chemical | denotes | carbohydrates | http://purl.obolibrary.org/obo/CHEBI_16646 |
T56 | 367-374 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T57 | 388-395 | Chemical | denotes | carrier | http://purl.obolibrary.org/obo/CHEBI_78059 |
T58 | 396-404 | Chemical | denotes | molecule | http://purl.obolibrary.org/obo/CHEBI_25367 |
T59 | 477-489 | Chemical | denotes | carbohydrate | http://purl.obolibrary.org/obo/CHEBI_16646 |
T60 | 574-585 | Chemical | denotes | angiotensin | http://purl.obolibrary.org/obo/CHEBI_48433 |
T61 | 633-645 | Chemical | denotes | carbohydrate | http://purl.obolibrary.org/obo/CHEBI_16646 |
T62 | 668-675 | Chemical | denotes | carrier | http://purl.obolibrary.org/obo/CHEBI_78059 |
T63 | 784-799 | Chemical | denotes | polysaccharides | http://purl.obolibrary.org/obo/CHEBI_18154 |
T64 | 877-891 | Chemical | denotes | polysaccharide | http://purl.obolibrary.org/obo/CHEBI_18154 |
T65 | 906-913 | Chemical | denotes | carrier | http://purl.obolibrary.org/obo/CHEBI_78059 |
T66 | 932-944 | Chemical | denotes | carbohydrate | http://purl.obolibrary.org/obo/CHEBI_16646 |
LitCovid-sample-PD-IDO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T28 | 90-95 | http://purl.obolibrary.org/obo/BFO_0000029 | denotes | sites |
T29 | 202-207 | http://purl.obolibrary.org/obo/BFO_0000029 | denotes | sites |
LitCovid-sample-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T47 | 54-61 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T48 | 134-141 | Chemical | denotes | mannose | http://purl.obolibrary.org/obo/CHEBI_37684 |
T49 | 167-174 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
T50 | 318-331 | Chemical | denotes | carbohydrates | http://purl.obolibrary.org/obo/CHEBI_16646 |
T51 | 367-374 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T52 | 439-444 | Chemical | denotes | PPSGG | http://purl.obolibrary.org/obo/CHEBI_137080 |
T53 | 477-489 | Chemical | denotes | carbohydrate | http://purl.obolibrary.org/obo/CHEBI_16646 |
T54 | 574-585 | Chemical | denotes | angiotensin | http://purl.obolibrary.org/obo/CHEBI_48433 |
T55 | 633-645 | Chemical | denotes | carbohydrate | http://purl.obolibrary.org/obo/CHEBI_16646 |
T56 | 784-799 | Chemical | denotes | polysaccharides | http://purl.obolibrary.org/obo/CHEBI_18154 |
T57 | 877-891 | Chemical | denotes | polysaccharide | http://purl.obolibrary.org/obo/CHEBI_18154 |
T58 | 932-944 | Chemical | denotes | carbohydrate | http://purl.obolibrary.org/obo/CHEBI_16646 |
LitCovid-sample-PD-NCBITaxon
Id | Subject | Object | Predicate | Lexical cue | ncbi_taxonomy_id |
---|---|---|---|---|---|
T21 | 548-556 | Species | denotes | COViD‐19 | NCBItxid:2697049 |
LitCovid-sample-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T44 | 0-121 | Sentence | denotes | In the so‐called receptor‐binding domain of the spike protein there are 22 glycan‐binding sites (Shahajan, Supekar et al. |
T45 | 122-128 | Sentence | denotes | 2020). |
T46 | 129-252 | Sentence | denotes | High mannose, hybrid and complex‐type glycans across the N‐glycosylation sites have been identified with mass spectrometry. |
T47 | 253-461 | Sentence | denotes | One could imagine building a therapeutic which might contain the carbohydrates, or a suitable mimic, of the spike protein coupled to a carrier molecule, much in a similar fashion to how PPSGG was constructed. |
T48 | 462-613 | Sentence | denotes | Such a “decoy” carbohydrate could block the binding and subsequent internalization of COViD‐19 to its receptor, angiotensin converting enzyme‐2 (ACE2). |
T49 | 614-715 | Sentence | denotes | In addition, spike carbohydrate clusters coupled to a carrier might proof to be an effective vaccine. |
T50 | 716-848 | Sentence | denotes | Both the pneumococcal vaccine and the meningococcal vaccines target polysaccharides in pneumococcus and meningococcus, respectively. |
T51 | 849-969 | Sentence | denotes | They couple the appropriate polysaccharide to a suitable carrier to achieve potent carbohydrate‐specific immunogenicity. |
LitCovid-sample-Pubtator
Id | Subject | Object | Predicate | Lexical cue | pubann:denotes |
---|---|---|---|---|---|
212 | 48-53 | Gene | denotes | spike | Gene:43740568 |
217 | 75-81 | Chemical | denotes | glycan | MESH:D011134 |
218 | 134-141 | Chemical | denotes | mannose | MESH:D008358 |
219 | 167-174 | Chemical | denotes | glycans | MESH:D011134 |
220 | 186-187 | Chemical | denotes | N | MESH:D009584 |
221 | 318-331 | Chemical | denotes | carbohydrates | MESH:D002241 |
213 | 361-366 | Gene | denotes | spike | Gene:43740568 |
222 | 439-444 | Chemical | denotes | PPSGG | |
223 | 470-489 | Chemical | denotes | decoy” carbohydrate | |
228 | 548-556 | Disease | denotes | COViD‐19 | MESH:C000657245 |
214 | 574-605 | Gene | denotes | angiotensin converting enzyme‐2 | Gene:59272 |
215 | 607-611 | Gene | denotes | ACE2 | Gene:59272 |
216 | 627-632 | Gene | denotes | spike | Gene:43740568 |
224 | 633-645 | Chemical | denotes | carbohydrate | MESH:D002241 |
229 | 725-737 | Disease | denotes | pneumococcal | MESH:D011008 |
230 | 754-767 | Disease | denotes | meningococcal | MESH:D008589 |
225 | 784-799 | Chemical | denotes | polysaccharides | MESH:D011134 |
231 | 803-833 | Disease | denotes | pneumococcus and meningococcus | |
226 | 877-891 | Chemical | denotes | polysaccharide | MESH:D011134 |
227 | 932-944 | Chemical | denotes | carbohydrate | MESH:D002241 |
LitCovid-sample-UniProt
Id | Subject | Object | Predicate | Lexical cue | uniprot_id |
---|---|---|---|---|---|
T71 | 48-61 | Protein | denotes | spike protein | https://www.uniprot.org/uniprot/P31340 |
T72 | 361-374 | Protein | denotes | spike protein | https://www.uniprot.org/uniprot/P31340 |
T73 | 574-605 | Protein | denotes | angiotensin converting enzyme‐2 | https://www.uniprot.org/uniprot/Q9UFZ6|https://www.uniprot.org/uniprot/Q9NRA7|https://www.uniprot.org/uniprot/Q9BYF1|https://www.uniprot.org/uniprot/Q99N71|https://www.uniprot.org/uniprot/Q99N70|https://www.uniprot.org/uniprot/Q8R0I0|https://www.uniprot.org/uniprot/Q86WT0|https://www.uniprot.org/uniprot/Q6UWP0|https://www.uniprot.org/uniprot/Q5RFN1|https://www.uniprot.org/uniprot/Q5EGZ1|https://www.uniprot.org/uniprot/Q58DD0|https://www.uniprot.org/uniprot/Q56NL1|https://www.uniprot.org/uniprot/Q56H28|https://www.uniprot.org/uniprot/Q2PGE2|https://www.uniprot.org/uniprot/C7ECU1 |
T88 | 607-611 | Protein | denotes | ACE2 | https://www.uniprot.org/uniprot/Q9UFZ6 |
LitCovid-sample-PD-FMA
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T84 | 54-61 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T85 | 134-141 | Body_part | denotes | mannose | http://purl.org/sig/ont/fma/fma82801 |
T86 | 318-331 | Body_part | denotes | carbohydrates | http://purl.org/sig/ont/fma/fma82737 |
T87 | 367-374 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T88 | 477-489 | Body_part | denotes | carbohydrate | http://purl.org/sig/ont/fma/fma82737 |
T89 | 633-645 | Body_part | denotes | carbohydrate | http://purl.org/sig/ont/fma/fma82737 |
T90 | 784-799 | Body_part | denotes | polysaccharides | http://purl.org/sig/ont/fma/fma82746 |
T91 | 877-891 | Body_part | denotes | polysaccharide | http://purl.org/sig/ont/fma/fma82746 |
T92 | 932-944 | Body_part | denotes | carbohydrate | http://purl.org/sig/ont/fma/fma82737 |
LitCovid-sample-PD-GO-BP-0
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T5 | 188-201 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
LitCovid-sample-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T21 | 548-556 | Disease | denotes | COViD‐19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-sample-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T6 | 188-201 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T6 | 186-201 | http://purl.obolibrary.org/obo/GO_0006487 | denotes | N‐glycosylation |
T7 | 188-201 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T44 | 0-121 | Sentence | denotes | In the so‐called receptor‐binding domain of the spike protein there are 22 glycan‐binding sites (Shahajan, Supekar et al. |
T45 | 122-128 | Sentence | denotes | 2020). |
T46 | 129-252 | Sentence | denotes | High mannose, hybrid and complex‐type glycans across the N‐glycosylation sites have been identified with mass spectrometry. |
T47 | 253-461 | Sentence | denotes | One could imagine building a therapeutic which might contain the carbohydrates, or a suitable mimic, of the spike protein coupled to a carrier molecule, much in a similar fashion to how PPSGG was constructed. |
T48 | 462-613 | Sentence | denotes | Such a “decoy” carbohydrate could block the binding and subsequent internalization of COViD‐19 to its receptor, angiotensin converting enzyme‐2 (ACE2). |
T49 | 614-715 | Sentence | denotes | In addition, spike carbohydrate clusters coupled to a carrier might proof to be an effective vaccine. |
T50 | 716-848 | Sentence | denotes | Both the pneumococcal vaccine and the meningococcal vaccines target polysaccharides in pneumococcus and meningococcus, respectively. |
T51 | 849-969 | Sentence | denotes | They couple the appropriate polysaccharide to a suitable carrier to achieve potent carbohydrate‐specific immunogenicity. |
LitCovid-sample-Glycan
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2 | 134-141 | http://rdf.glyconavi.org/CarTNa/CarTNa218/trivialname | denotes | mannose |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
212 | 48-53 | Gene | denotes | spike | Gene:43740568 |
213 | 361-366 | Gene | denotes | spike | Gene:43740568 |
214 | 574-605 | Gene | denotes | angiotensin converting enzyme‐2 | Gene:59272 |
215 | 607-611 | Gene | denotes | ACE2 | Gene:59272 |
216 | 627-632 | Gene | denotes | spike | Gene:43740568 |
217 | 75-81 | Chemical | denotes | glycan | MESH:D011134 |
218 | 134-141 | Chemical | denotes | mannose | MESH:D008358 |
219 | 167-174 | Chemical | denotes | glycans | MESH:D011134 |
220 | 186-187 | Chemical | denotes | N | MESH:D009584 |
221 | 318-331 | Chemical | denotes | carbohydrates | MESH:D002241 |
222 | 439-444 | Chemical | denotes | PPSGG | |
223 | 470-489 | Chemical | denotes | decoy” carbohydrate | |
224 | 633-645 | Chemical | denotes | carbohydrate | MESH:D002241 |
225 | 784-799 | Chemical | denotes | polysaccharides | MESH:D011134 |
226 | 877-891 | Chemical | denotes | polysaccharide | MESH:D011134 |
227 | 932-944 | Chemical | denotes | carbohydrate | MESH:D002241 |
228 | 548-556 | Disease | denotes | COViD‐19 | MESH:C000657245 |
229 | 725-737 | Disease | denotes | pneumococcal | MESH:D011008 |
230 | 754-767 | Disease | denotes | meningococcal | MESH:D008589 |
231 | 803-833 | Disease | denotes | pneumococcus and meningococcus |