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PMC:7358770 / 3428-4103 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T19 41-48 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T20 102-109 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T21 122-129 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T22 308-310 Body_part denotes CS http://purl.org/sig/ont/fma/fma284995|http://purl.org/sig/ont/fma/fma82837
T24 448-459 Body_part denotes cytoplasmic http://purl.org/sig/ont/fma/fma66835

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 460-464 Body_part denotes tail http://purl.obolibrary.org/obo/UBERON_0002415

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
106 607-611 Gene denotes ACE2 Gene:59272
107 24-27 Species denotes CoV Tax:11118
108 71-74 Species denotes CoV Tax:11118
109 507-510 Species denotes MHV Tax:11138

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T21 576-580 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T30 51-52 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T31 84-85 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T32 111-112 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T33 145-146 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 328-335 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T35 430-438 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T36 460-464 http://purl.obolibrary.org/obo/UBERON_0002415 denotes tail

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T33 41-48 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T34 102-109 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T35 122-129 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T36 308-310 Chemical denotes CS http://purl.obolibrary.org/obo/CHEBI_73462|http://purl.obolibrary.org/obo/CHEBI_37397
T38 328-335 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T39 337-339 Chemical denotes FP http://purl.obolibrary.org/obo/CHEBI_74750
T40 414-416 Chemical denotes TM http://purl.obolibrary.org/obo/CHEBI_55460|http://purl.obolibrary.org/obo/CHEBI_74861

2_test

Id Subject Object Predicate Lexical cue
32679328-22590686-48281227 672-673 22590686 denotes 7
T7810 672-673 22590686 denotes 7

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T27 0-110 Sentence denotes Fig. 2 The structure of CoV virion and S protein, (A) Depiction of the CoV virion; (B) Depiction of S protein.
T28 111-675 Sentence denotes A single S protein is depicted as a rectangle, and relevant structural features are highlighted as follows: N-terminal receptor binding domain (N-RBD) in dark blue; C-RBD in brown; cleavage sites (CS) 1 and 2, fusion peptide (FP) in red, heptad repeat (HR) regions 1 and 2 in green; transmembrane span (TM) depicted as membrane bilayer; cytoplasmic tail (CT) in light blue.; (C) Structure of the MHV N-RBD in complex with its CEACAM receptor.; (D) Structure of the SARS C-RBD in complex with its ACE2 receptor.; (E) Structure of the post-fusion HR1-HR2 bundle [7].

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T103 39-48 PG_1 denotes S protein
T104 100-109 PG_1 denotes S protein
T105 120-129 PG_1 denotes S protein
T106 247-253 SO:0000417 denotes domain
T107 292-300 MOP:0000780 denotes cleavage
T108 394-407 GO:0016020 denotes transmembrane
T109 430-438 GO:0016020 denotes membrane
T110 448-459 GO:0005737 denotes cytoplasmic
T111 507-510 NCBITaxon:11757 denotes MHV
T112 520-527 GO:1990524 denotes complex
T113 576-580 SP_10 denotes SARS
T114 590-597 GO:1990524 denotes complex
T115 607-611 G_3;PG_10;PR:000003622 denotes ACE2
T116 656-659 PR:000005225 denotes HR1
T67807 2-7 CHEBI:23888;CHEBI:23888 denotes g. 2
T58040 42-53 NCBITaxon:11118 denotes rotein, (A)
T14624 71-79 SP_7 denotes CoV viri
T79279 109-124 CHEBI:18154;CHEBI:18154 denotes . A single S pr
T24360 133-145 NCBITaxon:11118 denotes depicted as
T90324 146-161 CHEBI:18154;CHEBI:18154 denotes rectangle, and
T46400 181-190 CHEBI:36357;CHEBI:36357 denotes features
T99254 212-218 NCBITaxon:3193 denotes llows:
T58294 236-243 NCBITaxon:33208 denotes or bind
T73413 278-293 CHEBI:18154;CHEBI:18154 denotes RBD in brown; c
T91919 423-436 NCBITaxon:11118 denotes ted as membra
T80071 446-454 SP_10 denotes ; cytopl
T49849 456-464 SP_9 denotes mic tail
T17447 476-486 SP_7 denotes ht blue.;
T14527 537-543 NCBITaxon:9606 denotes CEACAM
T13349 548-555 NCBITaxon:33208 denotes ptor.;
T87933 594-604 CHEBI:35222;CHEBI:35222 denotes lex with i
T91737 611-626 CHEBI:18154;CHEBI:18154 denotes receptor.; (E)

MyTest

Id Subject Object Predicate Lexical cue tao:has_database_id
106 607-611 Gene denotes ACE2 Gene:59272
107 24-27 Species denotes CoV Tax:11118
108 71-74 Species denotes CoV Tax:11118
109 507-510 Species denotes MHV Tax:11138