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PMC:7358770 / 25017-26440 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T257 0-15 Body_part denotes Polysaccharides http://purl.org/sig/ont/fma/fma82746
T258 37-52 Body_part denotes polysaccharides http://purl.org/sig/ont/fma/fma82746
T259 145-150 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T260 268-272 Body_part denotes mRNA http://purl.org/sig/ont/fma/fma67122
T261 277-284 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T262 309-314 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T263 327-347 Body_part denotes alveolar macrophages http://purl.org/sig/ont/fma/fma83023
T264 366-381 Body_part denotes oligosaccharide http://purl.org/sig/ont/fma/fma82742
T265 557-571 Body_part denotes polysaccharide http://purl.org/sig/ont/fma/fma82746
T266 704-709 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T267 717-732 Body_part denotes Polysaccharides http://purl.org/sig/ont/fma/fma82746
T268 826-829 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T269 892-899 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T270 923-926 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T271 994-1008 Body_part denotes polysaccharide http://purl.org/sig/ont/fma/fma82746

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
874 524-534 Gene denotes interferon
875 193-244 Species denotes porcine reproductive and respiratory syndrome virus Tax:28344
876 246-251 Species denotes PRRSV Tax:28344
877 747-763 Species denotes Grifola frondosa Tax:5627
878 790-804 Species denotes enterovirus 71 Tax:39054
879 1014-1031 Species denotes Angelica sinensis Tax:165353
880 1078-1093 Species denotes herbal medicine Tax:1407750
881 319-326 Species denotes porcine Tax:28344
882 577-587 Species denotes Gracilaria Tax:2782
883 613-622 Species denotes influenza Tax:11320
884 443-446 Species denotes IAV Tax:11320
885 1215-1218 Species denotes HBV Tax:10407
886 1378-1381 Species denotes IBV Tax:11120
887 0-15 Chemical denotes Polysaccharides MESH:D011134
888 37-52 Chemical denotes polysaccharides MESH:D011134
889 152-168 Chemical denotes Iota-carrageenan MESH:D002351
890 354-381 Chemical denotes Carrageenan oligosaccharide
891 548-571 Chemical denotes Sulfated polysaccharide
892 717-732 Chemical denotes Polysaccharides MESH:D011134
893 994-1008 Chemical denotes polysaccharide MESH:D011134
894 1171-1174 Chemical denotes APS
895 1337-1340 Chemical denotes APS
896 1295-1316 Disease denotes hepatitis B infection MESH:D006509
897 300-308 CellLine denotes Marc-145 CVCL:4540

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T98 193-238 Disease denotes porcine reproductive and respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0025494
T99 613-622 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T100 1171-1174 Disease denotes APS http://purl.obolibrary.org/obo/MONDO_0017278
T101 1295-1316 Disease denotes hepatitis B infection http://purl.obolibrary.org/obo/MONDO_0005344
T102 1295-1304 Disease denotes hepatitis http://purl.obolibrary.org/obo/MONDO_0002251
T103 1307-1316 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T104 1337-1340 Disease denotes APS http://purl.obolibrary.org/obo/MONDO_0017278

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T268 145-150 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T269 239-244 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T270 300-308 http://purl.obolibrary.org/obo/CLO_0007536 denotes Marc-145
T271 309-314 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T272 623-628 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T273 629-639 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T274 704-709 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T275 802-804 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T276 806-807 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T277 830-835 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T278 948-953 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T279 983-984 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T280 1042-1043 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T281 1165-1168 http://purl.obolibrary.org/obo/CLO_0054060 denotes 102
T282 1175-1178 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T283 1179-1180 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T284 1261-1262 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T285 1305-1306 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T286 1394-1395 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T390 37-52 Chemical denotes polysaccharides http://purl.obolibrary.org/obo/CHEBI_18154
T391 157-168 Chemical denotes carrageenan http://purl.obolibrary.org/obo/CHEBI_3435
T392 277-284 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T393 354-365 Chemical denotes Carrageenan http://purl.obolibrary.org/obo/CHEBI_3435
T394 366-381 Chemical denotes oligosaccharide http://purl.obolibrary.org/obo/CHEBI_50699
T395 524-534 Chemical denotes interferon http://purl.obolibrary.org/obo/CHEBI_52999
T396 557-571 Chemical denotes polysaccharide http://purl.obolibrary.org/obo/CHEBI_18154
T397 892-899 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T398 994-1008 Chemical denotes polysaccharide http://purl.obolibrary.org/obo/CHEBI_18154
T399 1085-1093 Chemical denotes medicine http://purl.obolibrary.org/obo/CHEBI_23888
T400 1171-1174 Chemical denotes APS http://purl.obolibrary.org/obo/CHEBI_17709
T401 1337-1340 Chemical denotes APS http://purl.obolibrary.org/obo/CHEBI_17709

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T44 82-99 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T45 82-99 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication
T46 849-866 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T47 849-866 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication
T48 923-936 http://purl.obolibrary.org/obo/GO_0032774 denotes RNA synthesis
T49 927-936 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis

2_test

Id Subject Object Predicate Lexical cue
32679328-30747721-48281314 349-351 30747721 denotes 98
32679328-20960180-48281315 711-714 20960180 denotes 100
32679328-27083830-48281316 938-941 27083830 denotes 101
32679328-22155400-48281317 1165-1168 22155400 denotes 102
32679328-19960563-48281318 1318-1321 19960563 denotes 103
32679328-29170045-48281319 1419-1421 29170045 denotes 78
T65591 349-351 30747721 denotes 98
T41855 711-714 20960180 denotes 100
T18612 938-941 27083830 denotes 101
T57053 1165-1168 22155400 denotes 102
T49528 1318-1321 19960563 denotes 103
T57681 1419-1421 29170045 denotes 78

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T156 0-151 Sentence denotes Polysaccharides, especially sulfated polysaccharides, can directly interfere with viral replication related enzymes and relevant targets in host cells.
T157 152-353 Sentence denotes Iota-carrageenan can effectively inhibit porcine reproductive and respiratory syndrome virus (PRRSV) replication at mRNA and protein levels in both Marc-145 cells and porcine alveolar macrophages [98].
T158 354-547 Sentence denotes Carrageenan oligosaccharide and its sulphated derivative have good inhibitory effects on IAV replication both in vitro and in vivo, while not seem to be dependent on the interferon system [99].
T159 548-716 Sentence denotes Sulfated polysaccharide from Gracilaria lemaneiformis shows anti-influenza virus activities in vitro by inhibiting viral adsorption and replication on host cells [100].
T160 717-943 Sentence denotes Polysaccharides isolated from Grifola frondosa showed resistance against enterovirus 71, a positive-stranded RNA virus, by blocking viral replication and inhibiting viral VP1 protein expression and genomic RNA synthesis [101].
T161 944-1170 Sentence denotes The virus replication was inhibited by a sulfated polysaccharide from Angelica sinensis, which is a commonly used traditional Chinese herbal medicine, at the dose of 10 and 30 mg/kg (26% and 30% inhibition respectively) [102].
T162 1171-1323 Sentence denotes APS has a long-lasting inhibitory effect on HBV replication in vivo, which can be used as a supplementary modality to treat hepatitis B infection [103].
T163 1324-1423 Sentence denotes Furthermore, APS can inhibit the replication of avian IBV in vitro in a dose-dependent manner [78].

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T11 1295-1304 Phenotype denotes hepatitis http://purl.obolibrary.org/obo/HP_0012115

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T697 0-15 CHEBI:18154;CHEBI:18154 denotes Polysaccharides
T698 37-52 CHEBI:18154;CHEBI:18154 denotes polysaccharides
T699 82-87 NCBITaxon:10239;GO:0006260 denotes viral
T700 88-99 GO:0006260 denotes replication
T701 157-168 CHEBI:37168;CHEBI:37168 denotes carrageenan
T702 201-213 NCBITaxon:28344;GO:0000003 denotes reproductive
T703 218-229 GO:0045333;NCBITaxon:11886 denotes respiratory
T704 230-238 NCBITaxon:11886 denotes syndrome
T705 239-244 NCBITaxon:10239 denotes virus
T706 327-335 UBERON:0003215 denotes alveolar
T707 336-347 CL:0000583 denotes macrophages
T708 354-365 CHEBI:3435;CHEBI:3435 denotes Carrageenan
T709 366-381 CHEBI:50699;CHEBI:50699 denotes oligosaccharide
T710 447-458 GO:0006260 denotes replication
T711 548-556 CHEBI:35195;CHEBI:35195 denotes Sulfated
T712 557-571 CHEBI:18154;CHEBI:18154 denotes polysaccharide
T713 577-587 NCBITaxon:61463 denotes Gracilaria
T714 588-601 NCBITaxon:2778 denotes lemaneiformis
T715 613-622 NCBITaxon:7719 denotes influenza
T716 623-628 NCBITaxon:10239 denotes virus
T717 663-668 NCBITaxon:10239 denotes viral
T718 684-695 GO:0006260 denotes replication
T719 717-732 CHEBI:18154;CHEBI:18154 denotes Polysaccharides
T720 747-754 NCBITaxon:61463 denotes Grifola
T721 755-763 NCBITaxon:31032 denotes frondosa
T722 790-801 NCBITaxon:9255 denotes enterovirus
T723 808-825 SO:0000984 denotes positive-stranded
T724 826-829 BV_22 denotes RNA
T725 830-835 BV_22;NCBITaxon:10239 denotes virus
T726 849-854 NCBITaxon:10239;GO:0006260 denotes viral
T727 855-866 GO:0006260 denotes replication
T728 882-887 NCBITaxon:10239 denotes viral
T729 892-899 BV_20 denotes protein
T730 900-910 BV_20;GO:0010467 denotes expression
T731 915-922 SO:0001026 denotes genomic
T732 923-936 GO:0032774 denotes RNA synthesis
T733 948-953 NCBITaxon:10239 denotes virus
T734 954-965 GO:0006260 denotes replication
T735 994-1008 CHEBI:18154;CHEBI:18154 denotes polysaccharide
T736 1023-1031 NCBITaxon:11034 denotes sinensis
T737 1171-1174 PR:000003015 denotes APS
T738 1215-1218 NCBITaxon:10376 denotes HBV
T739 1219-1230 GO:0006260 denotes replication
T740 1337-1340 PR:000003015 denotes APS
T741 1357-1368 GO:0006260 denotes replication
T742 1372-1377 NCBITaxon:8782 denotes avian
T743 1378-1381 NCBITaxon:10376 denotes IBV
T14195 1-6 NCBITaxon:10239 denotes olysa
T33401 22-33 GO:0006260 denotes ially sulfa
T71413 55-70 CHEBI:18154;CHEBI:18154 denotes an directly int
T88469 85-92 NCBITaxon:61463 denotes al repl
T91519 93-101 NCBITaxon:31032 denotes cation r
T36405 128-139 NCBITaxon:9255 denotes targets in
T8040 146-166 SO:0000984 denotes ells. Iota-carrageen
T13369 167-170 BV_22 denotes n c
T84892 171-176 BV_22;NCBITaxon:10239 denotes n eff
T19189 190-195 NCBITaxon:10239;GO:0006260 denotes it po
T59648 196-207 GO:0006260 denotes cine reprod
T58346 224-229 NCBITaxon:10239 denotes atory
T59550 234-241 BV_20 denotes rome vi
T53433 242-252 BV_20;GO:0010467 denotes us (PRRSV)
T51422 257-264 SO:0001026 denotes ication
T5031 265-278 GO:0032774 denotes at mRNA and p
T14373 290-295 NCBITaxon:10239 denotes s in
T16171 296-307 GO:0006260 denotes oth Marc-14
T60143 336-350 CHEBI:18154;CHEBI:18154 denotes macrophages [9
T2519 365-373 NCBITaxon:11034 denotes oligosa
T90403 511-514 PR:000003015 denotes nde
T86898 555-558 NCBITaxon:10376 denotes d p
T97708 559-570 GO:0006260 denotes lysaccharid
T31591 677-680 PR:000003015 denotes on
T50435 697-708 GO:0006260 denotes n host cell
T46338 712-717 NCBITaxon:8782 denotes 00].
T33669 718-721 NCBITaxon:10376 denotes oly
T35237 827-832 NCBITaxon:10239 denotes NA vi
T1464 878-883 UBERON:0002405;GO:0006955 denotes ing v
T52703 884-892 GO:0006955 denotes ral VP1
T98125 902-912 GO:0065007 denotes pression a
T36522 929-946 CL:0000235 denotes nthesis [101]. Th
T64620 975-980 UBERON:0002405 denotes ited
T32012 1045-1051 GO:0045087 denotes ommonl
T34765 1052-1059 GO:0045087;UBERON:0002405 denotes used t
T9398 1061-1067 CHEBI:16261;CHEBI:16261 denotes dition
T84718 1082-1089 CHEBI:59132;CHEBI:59132 denotes al medi
T32571 1099-1104 UBERON:0002405;GO:0006955 denotes he do
T36630 1105-1114 GO:0006955 denotes e of 10 a
T83142 1146-1156 GO:0065007;CL:0000815 denotes ion respec
T24299 1157-1164 CL:0000815 denotes ively)
T31940 1166-1170 UBERON:0002048;CL:0000082 denotes 02].
T1333 1171-1179 CL:0000082 denotes APS has
T86768 1180-1187 CL:0000084 denotes long-l
T8819 1206-1216 GO:0042571 denotes ffect on H
T32991 1233-1236 PR:F4KFT7 denotes vi
T74527 1244-1249 UBERON:0002405;GO:0006955 denotes h can
T98837 1250-1259 GO:0006955 denotes be used a
T50839 1283-1293 UBERON:0001004 denotes ty to trea
T99890 1294-1303 NCBITaxon:12814 denotes hepatiti
T31576 1304-1309 NCBITaxon:10239 denotes B in
T74467 1311-1314 NCBITaxon:11886 denotes cti
T65959 1342-1346 UBERON:0002048 denotes an i
T40151 1365-1369 NCBITaxon:10088 denotes ion
T40664 1390-1401 CHEBI:3435;CHEBI:3435 denotes in a dose-

MyTest

Id Subject Object Predicate Lexical cue tao:has_database_id
874 524-534 Gene denotes interferon
875 193-244 Species denotes porcine reproductive and respiratory syndrome virus Tax:28344
876 246-251 Species denotes PRRSV Tax:28344
877 747-763 Species denotes Grifola frondosa Tax:5627
878 790-804 Species denotes enterovirus 71 Tax:39054
879 1014-1031 Species denotes Angelica sinensis Tax:165353
880 1078-1093 Species denotes herbal medicine Tax:1407750
881 319-326 Species denotes porcine Tax:28344
882 577-587 Species denotes Gracilaria Tax:2782
883 613-622 Species denotes influenza Tax:11320
884 443-446 Species denotes IAV Tax:11320
885 1215-1218 Species denotes HBV Tax:10407
886 1378-1381 Species denotes IBV Tax:11120
887 0-15 Chemical denotes Polysaccharides MESH:D011134
888 37-52 Chemical denotes polysaccharides MESH:D011134
889 152-168 Chemical denotes Iota-carrageenan MESH:D002351
890 354-381 Chemical denotes Carrageenan oligosaccharide
891 548-571 Chemical denotes Sulfated polysaccharide
892 717-732 Chemical denotes Polysaccharides MESH:D011134
893 994-1008 Chemical denotes polysaccharide MESH:D011134
894 1171-1174 Chemical denotes APS
895 1337-1340 Chemical denotes APS
896 1295-1316 Disease denotes hepatitis B infection MESH:D006509
897 300-308 CellLine denotes Marc-145 CVCL:4540