PMC:7354481 / 52453-52861 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T338","span":{"begin":86,"end":90},"obj":"Body_part"},{"id":"T339","span":{"begin":144,"end":149},"obj":"Body_part"},{"id":"T340","span":{"begin":395,"end":399},"obj":"Body_part"}],"attributes":[{"id":"A338","pred":"fma_id","subj":"T338","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A339","pred":"fma_id","subj":"T339","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A340","pred":"fma_id","subj":"T340","obj":"http://purl.org/sig/ont/fma/fma74402"}],"text":"Figure 2 Rosalind meta-analysis for Bioproject PRJNA615032 was used for differential gene expression between SARS-CoV-2-infected NHEB and A549 cells with their (mock treated) controls (n = 3). 1.5 fold change was accepted as threshold value. (A) MA plot view of differential expression of upregulated and downregulated genes. (B) Heatmap analysis of each clone for 204 differentially expressed gene targets."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T322","span":{"begin":110,"end":118},"obj":"Disease"}],"attributes":[{"id":"A322","pred":"mondo_id","subj":"T322","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Figure 2 Rosalind meta-analysis for Bioproject PRJNA615032 was used for differential gene expression between SARS-CoV-2-infected NHEB and A549 cells with their (mock treated) controls (n = 3). 1.5 fold change was accepted as threshold value. (A) MA plot view of differential expression of upregulated and downregulated genes. (B) Heatmap analysis of each clone for 204 differentially expressed gene targets."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T585","span":{"begin":86,"end":90},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T586","span":{"begin":139,"end":143},"obj":"http://purl.obolibrary.org/obo/CLO_0001601"},{"id":"T587","span":{"begin":139,"end":143},"obj":"http://purl.obolibrary.org/obo/CLO_0050025"},{"id":"T588","span":{"begin":139,"end":143},"obj":"http://purl.obolibrary.org/obo/CLO_0054264"},{"id":"T589","span":{"begin":139,"end":143},"obj":"http://purl.obolibrary.org/obo/CLO_0054265"},{"id":"T590","span":{"begin":139,"end":143},"obj":"http://purl.obolibrary.org/obo/CLO_0054266"},{"id":"T591","span":{"begin":139,"end":143},"obj":"http://purl.obolibrary.org/obo/CLO_0054267"},{"id":"T592","span":{"begin":139,"end":143},"obj":"http://purl.obolibrary.org/obo/CLO_0054268"},{"id":"T593","span":{"begin":139,"end":143},"obj":"http://purl.obolibrary.org/obo/CLO_0054269"},{"id":"T594","span":{"begin":144,"end":149},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T595","span":{"begin":244,"end":245},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T596","span":{"begin":320,"end":325},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T597","span":{"begin":328,"end":329},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T598","span":{"begin":395,"end":399},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"}],"text":"Figure 2 Rosalind meta-analysis for Bioproject PRJNA615032 was used for differential gene expression between SARS-CoV-2-infected NHEB and A549 cells with their (mock treated) controls (n = 3). 1.5 fold change was accepted as threshold value. (A) MA plot view of differential expression of upregulated and downregulated genes. (B) Heatmap analysis of each clone for 204 differentially expressed gene targets."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T80446","span":{"begin":247,"end":249},"obj":"Chemical"}],"attributes":[{"id":"A38640","pred":"chebi_id","subj":"T80446","obj":"http://purl.obolibrary.org/obo/CHEBI_474859"},{"id":"A20197","pred":"chebi_id","subj":"T80446","obj":"http://purl.obolibrary.org/obo/CHEBI_73610"},{"id":"A63662","pred":"chebi_id","subj":"T80446","obj":"http://purl.obolibrary.org/obo/CHEBI_90325"}],"text":"Figure 2 Rosalind meta-analysis for Bioproject PRJNA615032 was used for differential gene expression between SARS-CoV-2-infected NHEB and A549 cells with their (mock treated) controls (n = 3). 1.5 fold change was accepted as threshold value. (A) MA plot view of differential expression of upregulated and downregulated genes. (B) Heatmap analysis of each clone for 204 differentially expressed gene targets."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T210","span":{"begin":86,"end":101},"obj":"http://purl.obolibrary.org/obo/GO_0010467"}],"text":"Figure 2 Rosalind meta-analysis for Bioproject PRJNA615032 was used for differential gene expression between SARS-CoV-2-infected NHEB and A549 cells with their (mock treated) controls (n = 3). 1.5 fold change was accepted as threshold value. (A) MA plot view of differential expression of upregulated and downregulated genes. (B) Heatmap analysis of each clone for 204 differentially expressed gene targets."}

{"project":"LitCovid-sentences","denotations":[{"id":"T341","span":{"begin":0,"end":193},"obj":"Sentence"},{"id":"T342","span":{"begin":194,"end":408},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Figure 2 Rosalind meta-analysis for Bioproject PRJNA615032 was used for differential gene expression between SARS-CoV-2-infected NHEB and A549 cells with their (mock treated) controls (n = 3). 1.5 fold change was accepted as threshold value. (A) MA plot view of differential expression of upregulated and downregulated genes. (B) Heatmap analysis of each clone for 204 differentially expressed gene targets."}

{"project":"LitCovid-PubTator","denotations":[{"id":"1616","span":{"begin":115,"end":129},"obj":"Disease"},{"id":"1617","span":{"begin":139,"end":143},"obj":"CellLine"}],"attributes":[{"id":"A1616","pred":"tao:has_database_id","subj":"1616","obj":"MESH:C000657245"},{"id":"A1617","pred":"tao:has_database_id","subj":"1617","obj":"CVCL:0023"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Figure 2 Rosalind meta-analysis for Bioproject PRJNA615032 was used for differential gene expression between SARS-CoV-2-infected NHEB and A549 cells with their (mock treated) controls (n = 3). 1.5 fold change was accepted as threshold value. (A) MA plot view of differential expression of upregulated and downregulated genes. (B) Heatmap analysis of each clone for 204 differentially expressed gene targets."}