PMC:7354481 / 38444-39587
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T259 | 189-192 | Body_part | denotes | gut | http://purl.org/sig/ont/fma/fma7199 |
| T260 | 244-254 | Body_part | denotes | intestinal | http://purl.org/sig/ont/fma/fma7199 |
| T261 | 273-285 | Body_part | denotes | lipoproteins | http://purl.org/sig/ont/fma/fma63169 |
| T262 | 341-356 | Body_part | denotes | coronary artery | http://purl.org/sig/ont/fma/fma49893 |
| T263 | 528-531 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
| T264 | 628-631 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
| T265 | 1002-1006 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T266 | 1007-1013 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T267 | 1105-1109 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T44 | 341-356 | Body_part | denotes | coronary artery | http://purl.obolibrary.org/obo/UBERON_0001621 |
| T45 | 350-356 | Body_part | denotes | artery | http://purl.obolibrary.org/obo/UBERON_0001637 |
| T46 | 1002-1006 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T47 | 1007-1013 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T48 | 1105-1109 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T222 | 341-364 | Disease | denotes | coronary artery disease | http://purl.obolibrary.org/obo/MONDO_0005010 |
| T223 | 350-364 | Disease | denotes | artery disease | http://purl.obolibrary.org/obo/MONDO_0000473 |
| T224 | 376-392 | Disease | denotes | viral infections | http://purl.obolibrary.org/obo/MONDO_0005108 |
| T225 | 402-406 | Disease | denotes | AIDS | http://purl.obolibrary.org/obo/MONDO_0012268 |
| T226 | 408-421 | Disease | denotes | malabsorption | http://purl.obolibrary.org/obo/MONDO_0020598 |
| T227 | 501-510 | Disease | denotes | diarrhoea | http://purl.obolibrary.org/obo/MONDO_0001673 |
| T228 | 528-541 | Disease | denotes | HIV infection | http://purl.obolibrary.org/obo/MONDO_0005109 |
| T229 | 532-541 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T230 | 565-585 | Disease | denotes | vitamin A deficiency | http://purl.obolibrary.org/obo/MONDO_0007016 |
| T231 | 657-673 | Disease | denotes | viral infections | http://purl.obolibrary.org/obo/MONDO_0005108 |
| T232 | 683-693 | Disease | denotes | infectious | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T233 | 694-704 | Disease | denotes | bronchitis | http://purl.obolibrary.org/obo/MONDO_0003781 |
| T234 | 886-894 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T235 | 897-906 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T236 | 1069-1077 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T418 | 118-121 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T419 | 157-158 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T420 | 189-192 | http://purl.obolibrary.org/obo/UBERON_0001007 | denotes | gut |
| T421 | 189-192 | http://purl.obolibrary.org/obo/UBERON_0001555 | denotes | gut |
| T422 | 189-192 | http://www.ebi.ac.uk/efo/EFO_0000834 | denotes | gut |
| T423 | 244-254 | http://purl.obolibrary.org/obo/UBERON_0000160 | denotes | intestinal |
| T424 | 244-254 | http://www.ebi.ac.uk/efo/EFO_0000834 | denotes | intestinal |
| T425 | 350-356 | http://purl.obolibrary.org/obo/UBERON_0001637 | denotes | artery |
| T426 | 350-356 | http://www.ebi.ac.uk/efo/EFO_0000814 | denotes | artery |
| T427 | 436-439 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T428 | 573-574 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T429 | 586-589 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T430 | 705-710 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T431 | 738-746 | http://purl.obolibrary.org/obo/NCBITaxon_9031 | denotes | chickens |
| T432 | 787-788 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T433 | 807-817 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
| T434 | 846-847 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T435 | 958-960 | http://purl.obolibrary.org/obo/CLO_0001812 | denotes | B3 |
| T436 | 1002-1006 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T437 | 1002-1006 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T438 | 1105-1109 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T439 | 1105-1109 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T144 | 27-34 | Chemical | denotes | vitamin | http://purl.obolibrary.org/obo/CHEBI_33229 |
| T145 | 255-267 | Chemical | denotes | triglyceride | http://purl.obolibrary.org/obo/CHEBI_17855 |
| T146 | 273-285 | Chemical | denotes | lipoproteins | http://purl.obolibrary.org/obo/CHEBI_6495 |
| T147 | 307-314 | Chemical | denotes | vitamin | http://purl.obolibrary.org/obo/CHEBI_33229 |
| T148 | 425-432 | Chemical | denotes | vitamin | http://purl.obolibrary.org/obo/CHEBI_33229 |
| T149 | 565-574 | Chemical | denotes | vitamin A | http://purl.obolibrary.org/obo/CHEBI_12777 |
| T150 | 565-572 | Chemical | denotes | vitamin | http://purl.obolibrary.org/obo/CHEBI_33229 |
| T151 | 731-733 | Chemical | denotes | RV | http://purl.obolibrary.org/obo/CHEBI_73823 |
| T152 | 779-788 | Chemical | denotes | vitamin A | http://purl.obolibrary.org/obo/CHEBI_12777 |
| T153 | 779-786 | Chemical | denotes | vitamin | http://purl.obolibrary.org/obo/CHEBI_33229 |
| T154 | 861-870 | Chemical | denotes | vitamin D | http://purl.obolibrary.org/obo/CHEBI_27300 |
| T155 | 861-868 | Chemical | denotes | vitamin | http://purl.obolibrary.org/obo/CHEBI_33229 |
| T156 | 950-960 | Chemical | denotes | vitamin B3 | http://purl.obolibrary.org/obo/CHEBI_15940|http://purl.obolibrary.org/obo/CHEBI_17154 |
| T158 | 950-957 | Chemical | denotes | vitamin | http://purl.obolibrary.org/obo/CHEBI_33229 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T61 | 408-421 | Phenotype | denotes | malabsorption | http://purl.obolibrary.org/obo/HP_0002024 |
| T62 | 493-510 | Phenotype | denotes | chronic diarrhoea | http://purl.obolibrary.org/obo/HP_0002028 |
| T63 | 565-585 | Phenotype | denotes | vitamin A deficiency | http://purl.obolibrary.org/obo/HP_0004905 |
| T64 | 694-704 | Phenotype | denotes | bronchitis | http://purl.obolibrary.org/obo/HP_0012387 |
| T65 | 861-881 | Phenotype | denotes | vitamin D deficiency | http://purl.obolibrary.org/obo/HP_0100512 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T134 | 35-44 | http://purl.obolibrary.org/obo/GO_0007586 | denotes | digestion |
| T135 | 307-325 | http://purl.obolibrary.org/obo/GO_0006766 | denotes | vitamin metabolism |
| T136 | 315-325 | http://purl.obolibrary.org/obo/GO_0008152 | denotes | metabolism |
| T137 | 376-392 | http://purl.obolibrary.org/obo/GO_0016032 | denotes | viral infections |
| T138 | 657-673 | http://purl.obolibrary.org/obo/GO_0016032 | denotes | viral infections |
| T139 | 779-799 | http://purl.obolibrary.org/obo/GO_0006776 | denotes | vitamin A metabolism |
| T140 | 789-799 | http://purl.obolibrary.org/obo/GO_0008152 | denotes | metabolism |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T253 | 0-99 | Sentence | denotes | Another important pathway, vitamin digestion and absorption, was found to be related to miR-3934-3. |
| T254 | 100-230 | Sentence | denotes | This KEGG pathway has been highlighted amongst others as a link between dysbiosis of the gut microbiome and chronic diseases [85]. |
| T255 | 231-398 | Sentence | denotes | Furthermore, intestinal triglyceride-rich lipoproteins have been related to vitamin metabolism in relation to coronary artery disease as well as viral infections [86]. |
| T256 | 399-550 | Sentence | denotes | In AIDS, malabsorption of vitamin 12 has been related to gastric secretory failure, including chronic diarrhoea, due to advanced HIV infection [87,88]. |
| T257 | 551-645 | Sentence | denotes | Additionally, vitamin A deficiency has been associated with more progressive HIV disease [89]. |
| T258 | 646-830 | Sentence | denotes | Veterinary viral infections, such as infectious bronchitis virus (IBV) and reovirus (RV) in chickens, have been identified to affect vitamin A metabolism due to epithelial damage [90]. |
| T259 | 831-943 | Sentence | denotes | Interestingly, a link between vitamin D deficiency and SARS-CoV-2 infection severity was recently reported [91]. |
| T260 | 944-1143 | Sentence | denotes | Also, vitamin B3 was found to be highly effective to help lung tissue damage repair [92] and it was suggested to be given to COVID-19 patients as soon as the CT lung abnormalities were detected [93]. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32512929-25759505-144200766 | 226-228 | 25759505 | denotes | 85 |
| 32512929-29387048-144200767 | 394-396 | 29387048 | denotes | 86 |
| 32512929-23871915-144200768 | 543-545 | 23871915 | denotes | 87 |
| 32512929-1449141-144200769 | 546-548 | 1449141 | denotes | 88 |
| 32512929-7924736-144200770 | 641-643 | 7924736 | denotes | 89 |
| 32512929-20113193-144200771 | 826-828 | 20113193 | denotes | 90 |
| 32512929-1310111-144200772 | 939-941 | 1310111 | denotes | 91 |
| 32512929-7527336-144200773 | 1139-1141 | 7527336 | denotes | 93 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 930 | 189-203 | Species | denotes | gut microbiome | Tax:749906 |
| 931 | 683-710 | Species | denotes | infectious bronchitis virus | Tax:11120 |
| 932 | 721-729 | Species | denotes | reovirus | Tax:10891 |
| 933 | 738-746 | Species | denotes | chickens | Tax:9031 |
| 934 | 1078-1086 | Species | denotes | patients | Tax:9606 |
| 935 | 712-715 | Species | denotes | IBV | Tax:11120 |
| 936 | 731-733 | Species | denotes | RV | Tax:10891 |
| 937 | 88-96 | Gene | denotes | miR-3934 | Gene:100500873 |
| 938 | 425-435 | Chemical | denotes | vitamin 12 | |
| 939 | 565-574 | Chemical | denotes | vitamin A | MESH:D014801 |
| 940 | 779-788 | Chemical | denotes | vitamin A | MESH:D014801 |
| 941 | 861-870 | Chemical | denotes | vitamin D | MESH:D014807 |
| 942 | 950-960 | Chemical | denotes | vitamin B3 | MESH:D009536 |
| 943 | 172-181 | Disease | denotes | dysbiosis | MESH:D064806 |
| 944 | 208-224 | Disease | denotes | chronic diseases | MESH:D002908 |
| 945 | 341-364 | Disease | denotes | coronary artery disease | MESH:D003324 |
| 946 | 376-392 | Disease | denotes | viral infections | MESH:D001102 |
| 947 | 402-406 | Disease | denotes | AIDS | MESH:D000163 |
| 948 | 408-421 | Disease | denotes | malabsorption | MESH:D008286 |
| 949 | 456-481 | Disease | denotes | gastric secretory failure | MESH:D013272 |
| 950 | 501-510 | Disease | denotes | diarrhoea | MESH:D003967 |
| 951 | 528-541 | Disease | denotes | HIV infection | MESH:D015658 |
| 952 | 575-585 | Disease | denotes | deficiency | MESH:D007153 |
| 953 | 628-639 | Disease | denotes | HIV disease | MESH:D015658 |
| 954 | 657-673 | Disease | denotes | viral infections | MESH:D001102 |
| 955 | 807-824 | Disease | denotes | epithelial damage | MESH:D002277 |
| 956 | 871-881 | Disease | denotes | deficiency | MESH:D007153 |
| 957 | 886-906 | Disease | denotes | SARS-CoV-2 infection | MESH:C000657245 |
| 958 | 1069-1077 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 959 | 1105-1123 | Disease | denotes | lung abnormalities | MESH:D008171 |