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PMC:7354481 / 22586-24247 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T130 184-190 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T131 274-280 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T132 565-571 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T133 615-620 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T134 743-747 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T135 923-930 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T136 1094-1098 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T137 1099-1105 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T138 1245-1249 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T139 1295-1299 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T140 1318-1322 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T141 1374-1378 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T142 1379-1385 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T143 1503-1507 Body_part denotes axis http://purl.org/sig/ont/fma/fma12520
T144 1655-1660 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T14 1094-1098 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T15 1099-1105 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T16 1374-1378 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T17 1379-1385 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T85 88-92 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T86 293-301 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T87 554-562 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T88 912-920 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T89 1074-1082 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T211 73-78 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T212 405-408 http://purl.obolibrary.org/obo/PR_000001932 denotes hsa
T213 471-472 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T214 536-539 http://purl.obolibrary.org/obo/PR_000001932 denotes hsa
T215 609-620 http://purl.obolibrary.org/obo/CLO_0053065 denotes human cells
T216 743-747 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T217 1094-1098 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T218 1094-1098 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T219 1245-1249 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T220 1281-1285 http://purl.obolibrary.org/obo/CLO_0001601 denotes A549
T221 1281-1285 http://purl.obolibrary.org/obo/CLO_0050025 denotes A549
T222 1281-1285 http://purl.obolibrary.org/obo/CLO_0054264 denotes A549
T223 1281-1285 http://purl.obolibrary.org/obo/CLO_0054265 denotes A549
T224 1281-1285 http://purl.obolibrary.org/obo/CLO_0054266 denotes A549
T225 1281-1285 http://purl.obolibrary.org/obo/CLO_0054267 denotes A549
T226 1281-1285 http://purl.obolibrary.org/obo/CLO_0054268 denotes A549
T227 1281-1285 http://purl.obolibrary.org/obo/CLO_0054269 denotes A549
T228 1295-1304 http://purl.obolibrary.org/obo/CLO_0000031 denotes cell line
T229 1318-1322 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T230 1374-1378 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T231 1374-1378 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T232 1493-1502 http://purl.obolibrary.org/obo/SO_0000418 denotes signaling
T233 1655-1660 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T65 1245-1260 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T66 1318-1333 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T67 1493-1502 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T155 0-143 Sentence denotes In the current study, we identified potentially similar miR sequences of human miRs and SARS-Cov-2 strains from different geographical regions.
T156 144-353 Sentence denotes For this purpose, we selected different genome sequence studies released recently in PubMed® and GISAID databases, which included genome results for SARS-CoV-2 strains from four different geographical regions.
T157 354-443 Sentence denotes We first aligned all the sequences with the mature hsa-miR database presented in miRBase.
T158 444-798 Sentence denotes During this study, we made a cluster according to the co-existence of significantly aligned hsa-miRs with the SARS-CoV-2 genome and their biological significance in human cells. miRPath version 3 was used for the determination of the selected miRs’ potential biological effects via searching target gene-related results found in the KEGG and GO pathways.
T159 799-963 Sentence denotes The mutational alterations were also analyzed for different miRs, which showed significant alignment scores with SARS-CoV-2 genomes from other geographical regions.
T160 964-1121 Sentence denotes Concomitantly, we also analyzed and compared Bioproject PRJNA615032 trancriptome data obtained from normal vs SARS-CoV-2-infected lung tissue biopsy samples.
T161 1122-1227 Sentence denotes Data was submitted by tenOever Lab, Microbiology, Icahn School of Medicine at Mount Sinai on 24-Mar-2020.
T162 1228-1516 Sentence denotes In addition, the gene expression differences between A549 and NHEB cell line data and the gene expression differences between normal and infected lung tissue samples were analyzed in the REACTOME database (https://reactome.org/) to propose the potentially affected signaling axis members.
T163 1517-1661 Sentence denotes The clinical outcome of severe condition patients is discussed below, for selected miRs and their potential biological importance in host cells.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
394 73-78 Species denotes human Tax:9606
395 88-98 Species denotes SARS-Cov-2 Tax:2697049
396 293-303 Species denotes SARS-CoV-2 Tax:2697049
397 554-564 Species denotes SARS-CoV-2 Tax:2697049
398 609-614 Species denotes human Tax:9606
399 912-922 Species denotes SARS-CoV-2 Tax:2697049
400 1558-1566 Species denotes patients Tax:9606
401 1074-1093 Disease denotes SARS-CoV-2-infected MESH:C000657245
402 1365-1373 Disease denotes infected MESH:D007239
403 1281-1285 CellLine denotes A549 CVCL:0023