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PMC:7352545 / 9481-10616 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T49 367-370 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T50 425-428 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T51 460-466 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T52 495-498 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T53 500-510 Body_part denotes Nucleotide http://purl.org/sig/ont/fma/fma82740
T54 534-541 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T55 620-630 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T56 870-888 Body_part denotes respiratory tracts http://purl.org/sig/ont/fma/fma265130
T57 1003-1009 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T58 1082-1085 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 870-888 Body_part denotes respiratory tracts http://purl.obolibrary.org/obo/UBERON_0000065

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
379 664-667 Gene denotes bat Gene:570
380 0-4 Species denotes CoVs Tax:11118
381 8-14 Species denotes humans Tax:9606
382 155-160 Species denotes human Tax:9606
383 161-164 Species denotes CoV Tax:11118
384 173-182 Species denotes HCoV-HKU1 Tax:290028
385 187-196 Species denotes HCoV-NL63 Tax:277944
386 206-211 Species denotes Human Tax:9606
387 264-267 Species denotes CoV Tax:11118
388 269-278 Species denotes HCoV-NL63 Tax:277944
389 283-292 Species denotes HCoV-229E Tax:11137
390 298-303 Species denotes β-CoV Tax:694002
391 305-313 Species denotes SARS-CoV Tax:694009
392 315-325 Species denotes SARS-CoV-2 Tax:2697049
393 327-336 Species denotes HCoV-OC43 Tax:31631
394 338-347 Species denotes HCoV-HKU1 Tax:290028
395 352-360 Species denotes MERS-CoV Tax:1335626
396 363-366 Species denotes CoV Tax:11118
397 438-442 Species denotes CoVs Tax:11118
398 524-527 Species denotes CoV Tax:11118
399 565-573 Species denotes patients Tax:9606
400 678-681 Species denotes CoV Tax:11118
401 722-730 Species denotes SARS-CoV Tax:694009
402 750-753 Species denotes CoV Tax:11118
403 777-782 Species denotes β-CoV Tax:694002
404 815-825 Species denotes SARS-CoV-2 Tax:2697049
405 829-838 Species denotes 2019-nCoV Tax:2697049
406 845-855 Species denotes SARS-CoV-2 Tax:2697049
407 864-869 Species denotes human Tax:9606
408 924-934 Species denotes SARS-CoV-2 Tax:2697049
409 940-949 Species denotes novel CoV Tax:2697049
410 1022-1032 Species denotes SARS-CoV-2 Tax:2697049
411 1073-1081 Species denotes SARS-CoV Tax:694009
412 1112-1120 Species denotes MERS-CoV Tax:1335626
413 212-222 Species denotes infectious Tax:55987
414 870-881 Species denotes respiratory Tax:12814
415 35-57 Disease denotes respiratory infections MESH:D012141
416 556-564 Disease denotes COVID-19 MESH:C000657245
417 913-922 Disease denotes pneumonia MESH:D011014

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T42 35-57 Disease denotes respiratory infections http://purl.obolibrary.org/obo/MONDO_0024355
T43 150-154 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T44 212-222 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T45 305-313 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T46 315-323 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T47 556-564 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T48 668-672 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T49 722-730 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T50 815-823 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T51 845-853 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T52 913-922 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T53 924-932 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T54 1022-1030 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T55 1073-1081 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T100 8-14 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T101 155-160 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T102 206-211 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T103 391-392 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T104 429-436 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T105 485-487 http://purl.obolibrary.org/obo/CLO_0007074 denotes kb
T106 485-487 http://purl.obolibrary.org/obo/CLO_0051988 denotes kb
T107 588-589 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T108 664-667 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T109 864-869 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T110 938-939 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T257 500-510 Chemical denotes Nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T258 620-630 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T78 0-205 Sentence denotes CoVs in humans are associated with respiratory infections such as colds with clinical importance, as experienced for the previous outbreak in 2003 of SARS-human CoV (HCoV), HCoV-HKU1 and HCoV-NL63 [12,13].
T79 206-362 Sentence denotes Human infectious HCoV includes seven species, including α-CoV (HCoV-NL63 and HCoV-229E) and β-CoV (SARS-CoV, SARS-CoV-2, HCoV-OC43, HCoV-HKU1 and MERS-CoV).
T80 363-408 Sentence denotes CoV RNA sequences mutate at a high frequency.
T81 409-499 Sentence denotes Among the known RNA viruses, CoVs bear the longest genome sizes of 26 to 32 kb length RNA.
T82 500-731 Sentence denotes Nucleotide sequences of CoV ssRNA genomes isolated from COVID-19 patients in Wuhan show a high homology of 89% with the nucleotide sequence of the previously known bat SARS-like CoV-ZXC-21 strain and 89% with the previous SARS-CoV.
T83 732-844 Sentence denotes The initial Wuhan CoV isolates belong to the β-CoV genus and were therefore termed SARS-CoV-2 or 2019-nCoV [14].
T84 845-923 Sentence denotes SARS-CoV-2 infects human respiratory tracts and causes outbreaks of pneumonia.
T85 924-998 Sentence denotes SARS-CoV-2 is a novel CoV and originates from the Wuhan district in China.
T86 999-1135 Sentence denotes The genome sequence of SARS-CoV-2 exhibits 79% sequence homology with the SARS-CoV RNA sequence and 50% with the MERS-CoV sequence [15].

2_test

Id Subject Object Predicate Lexical cue
32604730-16575523-51943956 198-200 16575523 denotes 12
32604730-15034574-51943957 201-203 15034574 denotes 13
32604730-31987001-51943958 840-842 31987001 denotes 14
32604730-32007145-51943959 1131-1133 32007145 denotes 15
T30962 198-200 16575523 denotes 12
T36307 201-203 15034574 denotes 13
T68080 840-842 31987001 denotes 14
T22771 1131-1133 32007145 denotes 15

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T3 35-57 Phenotype denotes respiratory infections http://purl.obolibrary.org/obo/HP_0011947
T4 913-922 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090