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PMC:7352545 / 88577-89092 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T859 23-40 Body_part denotes glycosaminoglycan http://purl.org/sig/ont/fma/fma63011
T860 42-45 Body_part denotes GAG http://purl.org/sig/ont/fma/fma63011
T861 101-107 Body_part denotes serine http://purl.org/sig/ont/fma/fma82764
T862 112-114 Body_part denotes HS http://purl.org/sig/ont/fma/fma63023
T863 120-122 Body_part denotes HS http://purl.org/sig/ont/fma/fma63023
T864 151-156 Body_part denotes sugar http://purl.org/sig/ont/fma/fma82737
T865 201-203 Body_part denotes HS http://purl.org/sig/ont/fma/fma63023
T866 212-217 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T867 252-255 Body_part denotes GAG http://purl.org/sig/ont/fma/fma63011
T868 374-389 Body_part denotes heparan sulfate http://purl.org/sig/ont/fma/fma63023
T869 405-420 Body_part denotes glucuronic acid http://purl.org/sig/ont/fma/fma82798
T870 422-426 Body_part denotes GlcA http://purl.org/sig/ont/fma/fma82798

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
4053 23-40 Chemical denotes glycosaminoglycan MESH:D006025
4054 42-45 Chemical denotes GAG MESH:D006025
4055 55-70 Chemical denotes tetrasaccharide
4056 101-107 Chemical denotes serine MESH:D012694
4057 112-114 Chemical denotes HS MESH:D006497
4058 120-122 Chemical denotes HS MESH:D006497
4059 252-255 Chemical denotes GAG MESH:D006025
4060 278-286 Chemical denotes GlcAT-II
4061 374-389 Chemical denotes heparan sulfate MESH:D006497
4062 401-420 Chemical denotes β-D-glucuronic acid
4063 422-426 Chemical denotes GlcA
4064 429-446 Chemical denotes α-L-iduronic acid
4065 448-452 Chemical denotes IdoA
4066 458-485 Chemical denotes 2-O-sulfo-α-L-iduronic acid
4067 487-491 Chemical denotes IdoA

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1186 112-119 http://purl.obolibrary.org/obo/PR_000001932 denotes HS; (A)
T1187 135-136 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T1188 212-217 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T56175 23-40 Chemical denotes glycosaminoglycan http://purl.obolibrary.org/obo/CHEBI_18085
T77968 42-45 Chemical denotes GAG http://purl.obolibrary.org/obo/CHEBI_143889|http://purl.obolibrary.org/obo/CHEBI_18085
T916 55-70 Chemical denotes tetrasaccharide http://purl.obolibrary.org/obo/CHEBI_50126
T917 80-83 Chemical denotes Gal http://purl.obolibrary.org/obo/CHEBI_28260
T918 87-90 Chemical denotes Gal http://purl.obolibrary.org/obo/CHEBI_28260
T46997 94-97 Chemical denotes Xyl http://purl.obolibrary.org/obo/CHEBI_18222
T920 101-107 Chemical denotes serine http://purl.obolibrary.org/obo/CHEBI_17822
T921 112-114 Chemical denotes HS http://purl.obolibrary.org/obo/CHEBI_74056
T922 120-122 Chemical denotes HS http://purl.obolibrary.org/obo/CHEBI_74056
T923 201-203 Chemical denotes HS http://purl.obolibrary.org/obo/CHEBI_74056
T31866 252-255 Chemical denotes GAG http://purl.obolibrary.org/obo/CHEBI_143889|http://purl.obolibrary.org/obo/CHEBI_18085
T37633 284-286 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T927 330-332 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T84729 366-368 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T929 374-389 Chemical denotes heparan sulfate http://purl.obolibrary.org/obo/CHEBI_28815
T12333 374-381 Chemical denotes heparan http://purl.obolibrary.org/obo/CHEBI_24500
T931 382-389 Chemical denotes sulfate http://purl.obolibrary.org/obo/CHEBI_16189
T932 403-420 Chemical denotes D-glucuronic acid http://purl.obolibrary.org/obo/CHEBI_4178|http://purl.obolibrary.org/obo/CHEBI_47952|http://purl.obolibrary.org/obo/CHEBI_47953
T57649 405-420 Chemical denotes glucuronic acid http://purl.obolibrary.org/obo/CHEBI_24298
T936 416-420 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T937 422-426 Chemical denotes GlcA http://purl.obolibrary.org/obo/CHEBI_24298
T938 431-446 Chemical denotes L-iduronic acid http://purl.obolibrary.org/obo/CHEBI_28481|http://purl.obolibrary.org/obo/CHEBI_85187
T55375 433-446 Chemical denotes iduronic acid http://purl.obolibrary.org/obo/CHEBI_24769
T15629 442-446 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T942 448-452 Chemical denotes IdoA http://purl.obolibrary.org/obo/CHEBI_24769
T34978 462-467 Chemical denotes sulfo http://purl.obolibrary.org/obo/CHEBI_29922
T944 470-485 Chemical denotes L-iduronic acid http://purl.obolibrary.org/obo/CHEBI_28481|http://purl.obolibrary.org/obo/CHEBI_85187
T946 472-485 Chemical denotes iduronic acid http://purl.obolibrary.org/obo/CHEBI_24769
T947 481-485 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T66810 487-491 Chemical denotes IdoA http://purl.obolibrary.org/obo/CHEBI_24769

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T162 138-147 http://purl.obolibrary.org/obo/GO_0051923 denotes Sulfation
T163 171-180 http://purl.obolibrary.org/obo/GO_0009058 denotes Synthesis
T164 185-197 http://purl.obolibrary.org/obo/GO_0051179 denotes localization
T165 256-265 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T166 390-399 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T167 422-426 http://purl.obolibrary.org/obo/GO_0043879 denotes GlcA

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T928 0-218 Sentence denotes Figure 9 Structure of glycosaminoglycan (GAG)-linkage tetrasaccharide, GluAβ1,3Galβ1,3Galβ1,4Xylβ-O-serine and HS; (A) HS structure; (B) Sulfation of sugar residues; (C) Synthesis and localization of HS in host cells.
T929 219-515 Sentence denotes Glycosyltransferases involved in GAG synthesis include (i) GlcAT-II (glucuronosyltransferase) and (ii) GlcNAcT-II (N-acetylglucosaminyltransferase II) for heparan sulfate synthesis. β-D-glucuronic acid (GlcA), α-L-iduronic acid (IdoA) and 2-O-sulfo-α-L-iduronic acid (IdoA(2S) are composed [124].

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T29 112-114 GlycoEpitope denotes HS http://www.glycoepitope.jp/epitopes/EP0086
T30 120-122 GlycoEpitope denotes HS http://www.glycoepitope.jp/epitopes/EP0086
T31 201-203 GlycoEpitope denotes HS http://www.glycoepitope.jp/epitopes/EP0086
T32 374-389 GlycoEpitope denotes heparan sulfate http://www.glycoepitope.jp/epitopes/EP0086