PMC:7352545 / 67655-69051
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T647 | 13-17 | Body_part | denotes | hand | http://purl.org/sig/ont/fma/fma9712 |
| T648 | 58-70 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T649 | 214-227 | Body_part | denotes | glycoproteins | http://purl.org/sig/ont/fma/fma62925 |
| T650 | 294-307 | Body_part | denotes | glycoproteins | http://purl.org/sig/ont/fma/fma62925 |
| T651 | 353-365 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T652 | 442-454 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T653 | 588-599 | Body_part | denotes | erythrocyte | http://purl.org/sig/ont/fma/fma62845 |
| T654 | 717-722 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T655 | 929-941 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T656 | 1129-1141 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T657 | 1235-1248 | Body_part | denotes | glycoproteins | http://purl.org/sig/ont/fma/fma62925 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T35 | 13-17 | Body_part | denotes | hand | http://purl.obolibrary.org/obo/UBERON_0002398 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T258 | 485-502 | Disease | denotes | encephalomyelitis | http://purl.obolibrary.org/obo/MONDO_0005156 |
| T259 | 945-953 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T260 | 1116-1124 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T261 | 1348-1366 | Disease | denotes | zoonotic infection | http://purl.obolibrary.org/obo/MONDO_0025481 |
| T262 | 1357-1366 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T970 | 38-43 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T971 | 150-155 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | Virus |
| T972 | 378-379 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T973 | 503-508 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T974 | 556-557 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T975 | 588-599 | http://purl.obolibrary.org/obo/CL_0000232 | denotes | erythrocyte |
| T976 | 704-707 | http://purl.obolibrary.org/obo/CLO_0051568 | denotes | SAs |
| T977 | 717-722 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T978 | 761-762 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T979 | 829-832 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T980 | 839-844 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T981 | 849-855 | http://purl.obolibrary.org/obo/NCBITaxon_9479 | denotes | monkey |
| T982 | 863-867 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
| T983 | 1193-1194 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T984 | 1298-1301 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T99387 | 44-50 | Chemical | denotes | ligand | http://purl.obolibrary.org/obo/CHEBI_52214 |
| T367 | 58-70 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T368 | 214-227 | Chemical | denotes | glycoproteins | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T369 | 294-307 | Chemical | denotes | glycoproteins | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T370 | 353-365 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T48973 | 442-454 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T372 | 515-517 | Chemical | denotes | HA | http://purl.obolibrary.org/obo/CHEBI_73924 |
| T31382 | 536-542 | Chemical | denotes | acetyl | http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887 |
| T375 | 547-552 | Chemical | denotes | NeuAc | http://purl.obolibrary.org/obo/CHEBI_17012|http://purl.obolibrary.org/obo/CHEBI_49018 |
| T377 | 671-677 | Chemical | denotes | acetyl | http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887 |
| T379 | 682-687 | Chemical | denotes | NeuAc | http://purl.obolibrary.org/obo/CHEBI_17012|http://purl.obolibrary.org/obo/CHEBI_49018 |
| T381 | 929-941 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T382 | 1129-1141 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T383 | 1178-1187 | Chemical | denotes | N-glycans | http://purl.obolibrary.org/obo/CHEBI_59520 |
| T384 | 1180-1187 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
| T33823 | 1199-1208 | Chemical | denotes | O-glycans | http://purl.obolibrary.org/obo/CHEBI_59521 |
| T79477 | 1201-1208 | Chemical | denotes | glycans | http://purl.obolibrary.org/obo/CHEBI_18154 |
| T387 | 1235-1248 | Chemical | denotes | glycoproteins | http://purl.obolibrary.org/obo/CHEBI_17089 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T122 | 191-204 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
| T123 | 975-988 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
| T124 | 1030-1043 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
| T125 | 1216-1229 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | Glycosylation |
| T126 | 1258-1272 | http://purl.obolibrary.org/obo/GO_0042783 | denotes | immune evasion |
| T127 | 1321-1334 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T654 | 0-149 | Sentence | denotes | On the other hand, from the aspect of virus ligand, the S glycoprotein decorates viral surfaces and is, therefore, the target for vaccination design. |
| T655 | 150-228 | Sentence | denotes | Virus internalization requires potential glycosylation of viral glycoproteins. |
| T656 | 229-346 | Sentence | denotes | Among the three viral envelope components, S and M are the major glycoproteins and E is nascent and not glycosylated. |
| T657 | 347-435 | Sentence | denotes | The M glycoprotein consists of a short glycosylated ectodomain in the N-terminal region. |
| T658 | 436-615 | Sentence | denotes | The S glycoprotein expressed in hemagglutinating encephalomyelitis virus is an HA that recognizes N-acetyl-9-O-NeuAc as a binding receptor expressed on erythrocyte surfaces [134]. |
| T659 | 616-723 | Sentence | denotes | For example, BCoVs attach to the surface receptor of N-acetyl-9-O-NeuAc (9-O-acetylated SAs) on host cells. |
| T660 | 724-790 | Sentence | denotes | TGEV and PEDV are currently known as a similar class of such CoVs. |
| T661 | 791-922 | Sentence | denotes | PEDV infects multiple hosts including bat, pig, human and monkey, where bats are considered to be the evolutionary origin for PEDV. |
| T662 | 923-1025 | Sentence | denotes | The S glycoprotein of SARS-CoV-2 utilizes different glycosylation patterns to recognize its receptors. |
| T663 | 1026-1102 | Sentence | denotes | The glycosylation sites in minimal RBD exhibits similar sites to other CoVs. |
| T664 | 1103-1215 | Sentence | denotes | The trimeric SARS-CoV-2 S glycoprotein is also highly glycosylated with 66 N-glycans, but a few O-glycans [135]. |
| T665 | 1216-1273 | Sentence | denotes | Glycosylation of S glycoproteins leads to immune evasion. |
| T666 | 1274-1396 | Sentence | denotes | In the MERS-CoV and the bat-specific CoV-HKU4, glycosylation is linked to zoonotic infection for fusion-based entry [136]. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32604730-32366695-51944101 | 1210-1213 | 32366695 | denotes | 135 |
| 32604730-26063432-51944102 | 1391-1394 | 26063432 | denotes | 136 |
| T49065 | 1210-1213 | 32366695 | denotes | 135 |
| T76870 | 1391-1394 | 26063432 | denotes | 136 |