> top > docs > PMC:7352545 > spans > 65747-69051 > annotations

PMC:7352545 / 65747-69051 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T202 318-320 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T203 365-367 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T204 694-696 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T205 888-890 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T206 923-925 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T207 948-950 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T208 961-963 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T209 1094-1096 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T634 172-177 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T635 526-538 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T636 550-565 Body_part denotes oligosaccharide http://purl.org/sig/ont/fma/fma82742
T637 631-643 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T638 700-712 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T639 774-779 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T640 791-799 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T641 882-887 Body_part denotes sugar http://purl.org/sig/ont/fma/fma82737
T642 996-1008 Body_part denotes erythrocytes http://purl.org/sig/ont/fma/fma62845
T643 1230-1242 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T644 1326-1331 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T645 1443-1455 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T646 1485-1497 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T647 1921-1925 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T648 1966-1978 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T649 2122-2135 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T650 2202-2215 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T651 2261-2273 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T652 2350-2362 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T653 2496-2507 Body_part denotes erythrocyte http://purl.org/sig/ont/fma/fma62845
T654 2625-2630 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T655 2837-2849 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T656 3037-3049 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T657 3143-3156 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T35 1921-1925 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T255 1270-1278 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T256 1432-1440 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T257 1792-1796 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T258 2393-2410 Disease denotes encephalomyelitis http://purl.obolibrary.org/obo/MONDO_0005156
T259 2853-2861 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T260 3024-3032 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T261 3256-3274 Disease denotes zoonotic infection http://purl.obolibrary.org/obo/MONDO_0025481
T262 3265-3274 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T947 55-60 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T948 78-81 http://purl.obolibrary.org/obo/CLO_0051568 denotes SAs
T949 172-177 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T950 201-211 http://purl.obolibrary.org/obo/NCBITaxon_7742 denotes vertebrate
T951 212-217 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T952 235-238 http://purl.obolibrary.org/obo/CLO_0051568 denotes SAs
T953 307-312 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T954 359-364 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T955 421-428 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Viruses
T956 694-699 http://purl.obolibrary.org/obo/CLO_0051568 denotes SA, S
T957 741-746 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T958 774-779 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T959 843-846 http://purl.obolibrary.org/obo/CLO_0051568 denotes SAs
T960 990-995 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T961 996-1008 http://purl.obolibrary.org/obo/CL_0000232 denotes erythrocytes
T962 1281-1286 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T963 1310-1320 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T964 1326-1331 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T965 1507-1515 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T966 1580-1585 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T967 1586-1593 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T968 1672-1677 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T969 1900-1906 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T970 1946-1951 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T971 2058-2063 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T972 2286-2287 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T973 2411-2416 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T974 2464-2465 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T975 2496-2507 http://purl.obolibrary.org/obo/CL_0000232 denotes erythrocyte
T976 2612-2615 http://purl.obolibrary.org/obo/CLO_0051568 denotes SAs
T977 2625-2630 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T978 2669-2670 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T979 2737-2740 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T980 2747-2752 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T981 2757-2763 http://purl.obolibrary.org/obo/NCBITaxon_9479 denotes monkey
T982 2771-2775 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T983 3101-3102 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T984 3206-3209 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T15460 318-320 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T56686 332-339 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T34664 365-367 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T82447 521-523 Chemical denotes TM http://purl.obolibrary.org/obo/CHEBI_55460|http://purl.obolibrary.org/obo/CHEBI_74861
T19608 526-538 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T5761 550-565 Chemical denotes oligosaccharide http://purl.obolibrary.org/obo/CHEBI_50699
T6280 588-590 Chemical denotes EM http://purl.obolibrary.org/obo/CHEBI_73507
T60563 631-643 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T82160 694-696 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T59100 700-712 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T13995 791-799 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T83883 836-842 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T50854 875-881 Chemical denotes carbon http://purl.obolibrary.org/obo/CHEBI_27594|http://purl.obolibrary.org/obo/CHEBI_33415
T43350 888-890 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T93757 923-925 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T35064 948-950 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T41394 961-963 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T58977 1094-1096 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T17884 1117-1122 Chemical denotes NeuGc http://purl.obolibrary.org/obo/CHEBI_62084
T8946 1134-1139 Chemical denotes NeuAc http://purl.obolibrary.org/obo/CHEBI_17012|http://purl.obolibrary.org/obo/CHEBI_49018
T93873 1230-1242 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T74696 1373-1382 Chemical denotes N-glycans http://purl.obolibrary.org/obo/CHEBI_59520
T25458 1375-1382 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T17555 1443-1455 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T34749 1485-1497 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T46074 1678-1685 Chemical denotes ligands http://purl.obolibrary.org/obo/CHEBI_52214
T99387 1952-1958 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T367 1966-1978 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T368 2122-2135 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T369 2202-2215 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T370 2261-2273 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T48973 2350-2362 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T372 2423-2425 Chemical denotes HA http://purl.obolibrary.org/obo/CHEBI_73924
T31382 2444-2450 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T375 2455-2460 Chemical denotes NeuAc http://purl.obolibrary.org/obo/CHEBI_17012|http://purl.obolibrary.org/obo/CHEBI_49018
T377 2579-2585 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T379 2590-2595 Chemical denotes NeuAc http://purl.obolibrary.org/obo/CHEBI_17012|http://purl.obolibrary.org/obo/CHEBI_49018
T381 2837-2849 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T382 3037-3049 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T383 3086-3095 Chemical denotes N-glycans http://purl.obolibrary.org/obo/CHEBI_59520
T384 3088-3095 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T33823 3107-3116 Chemical denotes O-glycans http://purl.obolibrary.org/obo/CHEBI_59521
T79477 3109-3116 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T387 3143-3156 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T114 36-51 http://purl.obolibrary.org/obo/GO_0018280 denotes S Glycosylation
T115 38-51 http://purl.obolibrary.org/obo/GO_0070085 denotes Glycosylation
T116 55-77 http://purl.obolibrary.org/obo/GO_0019048 denotes Virus–Host Interaction
T117 158-171 http://purl.obolibrary.org/obo/GO_0044409 denotes entry to host
T118 760-773 http://purl.obolibrary.org/obo/GO_0044409 denotes entry to host
T119 1195-1208 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T120 1507-1522 http://purl.obolibrary.org/obo/GO_0061025 denotes membrane fusion
T121 1620-1631 http://purl.obolibrary.org/obo/GO_0097503 denotes sialylation
T122 2099-2112 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T123 2883-2896 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T124 2938-2951 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T125 3124-3137 http://purl.obolibrary.org/obo/GO_0070085 denotes Glycosylation
T126 3166-3180 http://purl.obolibrary.org/obo/GO_0042783 denotes immune evasion
T127 3229-3242 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T635 0-4 Sentence denotes 6.4.
T636 5-77 Sentence denotes Effects of Receptor and Ligand S Glycosylation on Virus–Host Interaction
T637 78-178 Sentence denotes SAs are predominant surface determinants for pathogen attachment, adherence and entry to host cells.
T638 179-291 Sentence denotes Eleven representative vertebrate virus families utilize SAs as initial entry receptors or as attachment factors.
T639 292-420 Sentence denotes Interaction of virus with SA-containing glycans is complex because virus SA-binding lectins are inherently of very low affinity.
T640 421-520 Sentence denotes Viruses acquire enzymes to catalyze virion elution by regional depletion of binding receptors [56].
T641 521-576 Sentence denotes TM S glycoprotein recognizes oligosaccharide receptors.
T642 577-780 Sentence denotes Using cryo-EM technology and observed structures of S glycoprotein trimers of CoV OC43 complexed with 9-O-acetylated SA, S glycoprotein was demonstrated to mediate virus adhesion and entry to host cells.
T643 781-847 Sentence denotes All CoV S proteins show conservation in binding to 9-O-acetyl-SAs.
T644 848-899 Sentence denotes MERS-CoV also recognizes 9-carbon sugar SA species.
T645 900-934 Sentence denotes MERS-CoV S-1A binds to SA species.
T646 935-1065 Sentence denotes For example, SAα2,3- over SAα2,6-linkages expressed in human erythrocytes and mucins are preferentially targeted by MERS-CoV S-1A.
T647 1066-1153 Sentence denotes Binding is hence blocked by SA modification to 5-N-NeuGc and 7, 9-O-NeuAc species [73].
T648 1154-1356 Sentence denotes For example, impairment of ACE2 receptor glycosylation does not influence S-glycoprotein-ACE2 interaction, however, SARS-CoV-2 virus entry into respiratory epithelial host cells was downregulated [133].
T649 1357-1523 Sentence denotes Changes in ACE2 N-glycans do not apparently influence interaction with the SARS-CoV S glycoprotein, but instead, impair viral S glycoprotein-mediated membrane fusion.
T650 1524-1594 Sentence denotes The receptor glycan structures decide the entry of some human viruses.
T651 1595-1704 Sentence denotes Changes in ACE2 receptor sialylation influences interaction affinity between virus ligands and host receptor.
T652 1705-1802 Sentence denotes Inter-species or individual genetic variations such as drift and mutation may occur in SARS-CoVs.
T653 1803-1907 Sentence denotes This explains currently emerging differences in CoV responses within the same population such as humans.
T654 1908-2057 Sentence denotes On the other hand, from the aspect of virus ligand, the S glycoprotein decorates viral surfaces and is, therefore, the target for vaccination design.
T655 2058-2136 Sentence denotes Virus internalization requires potential glycosylation of viral glycoproteins.
T656 2137-2254 Sentence denotes Among the three viral envelope components, S and M are the major glycoproteins and E is nascent and not glycosylated.
T657 2255-2343 Sentence denotes The M glycoprotein consists of a short glycosylated ectodomain in the N-terminal region.
T658 2344-2523 Sentence denotes The S glycoprotein expressed in hemagglutinating encephalomyelitis virus is an HA that recognizes N-acetyl-9-O-NeuAc as a binding receptor expressed on erythrocyte surfaces [134].
T659 2524-2631 Sentence denotes For example, BCoVs attach to the surface receptor of N-acetyl-9-O-NeuAc (9-O-acetylated SAs) on host cells.
T660 2632-2698 Sentence denotes TGEV and PEDV are currently known as a similar class of such CoVs.
T661 2699-2830 Sentence denotes PEDV infects multiple hosts including bat, pig, human and monkey, where bats are considered to be the evolutionary origin for PEDV.
T662 2831-2933 Sentence denotes The S glycoprotein of SARS-CoV-2 utilizes different glycosylation patterns to recognize its receptors.
T663 2934-3010 Sentence denotes The glycosylation sites in minimal RBD exhibits similar sites to other CoVs.
T664 3011-3123 Sentence denotes The trimeric SARS-CoV-2 S glycoprotein is also highly glycosylated with 66 N-glycans, but a few O-glycans [135].
T665 3124-3181 Sentence denotes Glycosylation of S glycoproteins leads to immune evasion.
T666 3182-3304 Sentence denotes In the MERS-CoV and the bat-specific CoV-HKU4, glycosylation is linked to zoonotic infection for fusion-based entry [136].

2_test

Id Subject Object Predicate Lexical cue
32604730-27185912-51944098 516-518 27185912 denotes 56
32604730-23615615-51944099 1149-1151 23615615 denotes 73
32604730-25348530-51944100 1351-1354 25348530 denotes 133
32604730-32366695-51944101 3118-3121 32366695 denotes 135
32604730-26063432-51944102 3299-3302 26063432 denotes 136
T24249 516-518 27185912 denotes 56
T62960 1149-1151 23615615 denotes 73
T11948 1351-1354 25348530 denotes 133
T49065 3118-3121 32366695 denotes 135
T76870 3299-3302 26063432 denotes 136