PMC:7352545 / 44266-44909
Annnotations
LitCovid_Glycan-Motif-Structure
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T188 | 108-110 | https://glytoucan.org/Structures/Glycans/G81533KY | denotes | SA |
| T189 | 608-610 | https://glytoucan.org/Structures/Glycans/G81533KY | denotes | SA |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T371 | 150-182 | Body_part | denotes | major histocompatibility complex | http://purl.org/sig/ont/fma/fma84079 |
| T372 | 192-195 | Body_part | denotes | MHC | http://purl.org/sig/ont/fma/fma84079 |
| T373 | 241-255 | Body_part | denotes | dendritic cell | http://purl.org/sig/ont/fma/fma273565 |
| T374 | 251-255 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T375 | 257-259 | Body_part | denotes | DC | http://purl.org/sig/ont/fma/fma273565 |
| T376 | 303-307 | Body_part | denotes | ICAM | http://purl.org/sig/ont/fma/fma67857 |
| T377 | 333-335 | Body_part | denotes | DC | http://purl.org/sig/ont/fma/fma273565 |
| T378 | 431-446 | Body_part | denotes | heparan sulfate | http://purl.org/sig/ont/fma/fma63023 |
| T379 | 448-450 | Body_part | denotes | HS | http://purl.org/sig/ont/fma/fma63023 |
| T380 | 452-465 | Body_part | denotes | proteoglycans | http://purl.org/sig/ont/fma/fma63015 |
| T381 | 530-537 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T382 | 557-586 | Body_part | denotes | heparan sulfate proteoglycans | http://purl.org/sig/ont/fma/fma82834 |
| T383 | 557-572 | Body_part | denotes | heparan sulfate | http://purl.org/sig/ont/fma/fma63023 |
| T384 | 588-593 | Body_part | denotes | HSPGs | http://purl.org/sig/ont/fma/fma82834 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T12 | 204-220 | Body_part | denotes | attachment sites | http://purl.obolibrary.org/obo/UBERON_4200047 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T149 | 227-235 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T150 | 407-416 | Disease | denotes | hepatitis | http://purl.obolibrary.org/obo/MONDO_0002251 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T595 | 55-58 | http://purl.obolibrary.org/obo/CLO_0051568 | denotes | SAs |
| T596 | 241-255 | http://purl.obolibrary.org/obo/CL_0000451 | denotes | dendritic cell |
| T597 | 257-259 | http://purl.obolibrary.org/obo/CL_0000451 | denotes | DC |
| T598 | 333-335 | http://purl.obolibrary.org/obo/CL_0000451 | denotes | DC |
| T599 | 401-406 | http://purl.obolibrary.org/obo/CLO_0007836 | denotes | mouse |
| T600 | 417-422 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T601 | 557-586 | http://purl.obolibrary.org/obo/PR_000001307 | denotes | heparan sulfate proteoglycans |
| T602 | 588-593 | http://purl.obolibrary.org/obo/PR_000001307 | denotes | HSPGs |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T1402 | 48-54 | Chemical | denotes | acetyl | http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887 |
| T1404 | 73-82 | Chemical | denotes | molecules | http://purl.obolibrary.org/obo/CHEBI_25367 |
| T1405 | 101-107 | Chemical | denotes | acetyl | http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887 |
| T1407 | 108-110 | Chemical | denotes | SA | http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667 |
| T1412 | 293-301 | Chemical | denotes | molecule | http://purl.obolibrary.org/obo/CHEBI_25367 |
| T1413 | 431-446 | Chemical | denotes | heparan sulfate | http://purl.obolibrary.org/obo/CHEBI_28815 |
| T1414 | 431-438 | Chemical | denotes | heparan | http://purl.obolibrary.org/obo/CHEBI_24500 |
| T1415 | 439-446 | Chemical | denotes | sulfate | http://purl.obolibrary.org/obo/CHEBI_16189 |
| T1416 | 448-450 | Chemical | denotes | HS | http://purl.obolibrary.org/obo/CHEBI_74056|http://purl.obolibrary.org/obo/CHEBI_28815 |
| T1418 | 452-465 | Chemical | denotes | proteoglycans | http://purl.obolibrary.org/obo/CHEBI_37396 |
| T1419 | 530-537 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T1420 | 557-572 | Chemical | denotes | heparan sulfate | http://purl.obolibrary.org/obo/CHEBI_28815 |
| T1421 | 557-564 | Chemical | denotes | heparan | http://purl.obolibrary.org/obo/CHEBI_24500 |
| T1422 | 565-572 | Chemical | denotes | sulfate | http://purl.obolibrary.org/obo/CHEBI_16189 |
| T1423 | 573-586 | Chemical | denotes | proteoglycans | http://purl.obolibrary.org/obo/CHEBI_37396 |
| T1424 | 601-607 | Chemical | denotes | acetyl | http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887 |
| T1426 | 608-610 | Chemical | denotes | SA | http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T70 | 150-182 | http://purl.obolibrary.org/obo/GO_0046776 | denotes | major histocompatibility complex |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T423 | 0-83 | Sentence | denotes | BCoV, HCoV-OC43, HCoV-HKU1 and TGEV recognize O-acetyl-SAs as attachment molecules. |
| T424 | 84-226 | Sentence | denotes | In addition to O-acetyl-SA, HCoV-HKU1 spikes additionally bind to major histocompatibility complex class I (MHC-I) C as attachment sites [85]. |
| T425 | 227-362 | Sentence | denotes | SARS-CoV uses dendritic cell (DC)-specific intercellular adhesion molecule (ICAM)-3–grabbing nonintegrin (DC-SIGN) for attachment [86]. |
| T426 | 363-495 | Sentence | denotes | For glycan interaction, HCoV-NL63 and mouse hepatitis virus utilize heparan sulfate (HS) proteoglycans as attachment enhancers [87]. |
| T427 | 496-643 | Sentence | denotes | In general, ACE2, APN, heat shock protein A5 (HSPA5), furin, heparan sulfate proteoglycans (HSPGs) and O-acetyl-SA are CoVs-recognizing candidates. |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T2 | 431-446 | GlycoEpitope | denotes | heparan sulfate | http://www.glycoepitope.jp/epitopes/EP0086 |
| T3 | 448-450 | GlycoEpitope | denotes | HS | http://www.glycoepitope.jp/epitopes/EP0086 |
| T4 | 557-572 | GlycoEpitope | denotes | heparan sulfate | http://www.glycoepitope.jp/epitopes/EP0086 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32604730-18987136-51944043 | 222-224 | 18987136 | denotes | 85 |
| 32604730-15479853-51944044 | 358-360 | 15479853 | denotes | 86 |
| 32604730-25187545-51944045 | 491-493 | 25187545 | denotes | 87 |
| T12031 | 222-224 | 18987136 | denotes | 85 |
| T88667 | 358-360 | 15479853 | denotes | 86 |
| T20555 | 491-493 | 25187545 | denotes | 87 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T11 | 407-416 | Phenotype | denotes | hepatitis | http://purl.obolibrary.org/obo/HP_0012115 |
| T12 | 524-529 | Phenotype | denotes | shock | http://purl.obolibrary.org/obo/HP_0031273 |