PMC:7352545 / 41180-42057
Annnotations
LitCovid_Glycan-Motif-Structure
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T173 | 124-126 | https://glytoucan.org/Structures/Glycans/G81533KY | denotes | SA |
| T174 | 175-177 | https://glytoucan.org/Structures/Glycans/G81533KY | denotes | SA |
| T175 | 533-535 | https://glytoucan.org/Structures/Glycans/G81533KY | denotes | SA |
| T176 | 633-635 | https://glytoucan.org/Structures/Glycans/G81533KY | denotes | SA |
| T177 | 838-845 | https://glytoucan.org/Structures/Glycans/G15021LG | denotes | glucose |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T341 | 60-73 | Body_part | denotes | glycoproteins | http://purl.org/sig/ont/fma/fma62925 |
| T342 | 89-101 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T343 | 127-132 | Body_part | denotes | sugar | http://purl.org/sig/ont/fma/fma82737 |
| T344 | 243-248 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T345 | 345-358 | Body_part | denotes | glycoproteins | http://purl.org/sig/ont/fma/fma62925 |
| T346 | 449-454 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T347 | 606-611 | Body_part | denotes | lipid | http://purl.org/sig/ont/fma/fma67264 |
| T348 | 733-755 | Body_part | denotes | cell adhesion molecule | http://purl.org/sig/ont/fma/fma67214 |
| T349 | 733-737 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T350 | 838-845 | Body_part | denotes | glucose | http://purl.org/sig/ont/fma/fma82743 |
| T351 | 856-863 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T143 | 36-45 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T144 | 314-323 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T145 | 396-405 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T554 | 4-7 | http://purl.obolibrary.org/obo/CLO_0053120 | denotes | HEs |
| T555 | 46-51 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T556 | 196-204 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
| T557 | 243-248 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T558 | 278-281 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T559 | 282-283 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T560 | 306-308 | http://purl.obolibrary.org/obo/CLO_0054055 | denotes | 71 |
| T561 | 332-339 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T562 | 406-407 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T563 | 408-413 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T564 | 449-454 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T565 | 488-489 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T566 | 733-737 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T567 | 811-819 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T1305 | 60-73 | Chemical | denotes | glycoproteins | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T1306 | 89-101 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T1307 | 121-123 | Chemical | denotes | Ac | http://purl.obolibrary.org/obo/CHEBI_33337|http://purl.obolibrary.org/obo/CHEBI_40574 |
| T1309 | 124-126 | Chemical | denotes | SA | http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667 |
| T1314 | 175-177 | Chemical | denotes | SA | http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667 |
| T1319 | 180-186 | Chemical | denotes | acetyl | http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887 |
| T1321 | 345-358 | Chemical | denotes | glycoproteins | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T1322 | 419-421 | Chemical | denotes | NA | http://purl.obolibrary.org/obo/CHEBI_33696 |
| T1323 | 533-535 | Chemical | denotes | SA | http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667 |
| T1328 | 606-611 | Chemical | denotes | lipid | http://purl.obolibrary.org/obo/CHEBI_18059 |
| T1329 | 633-635 | Chemical | denotes | SA | http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667 |
| T1334 | 717-724 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
| T1335 | 747-755 | Chemical | denotes | molecule | http://purl.obolibrary.org/obo/CHEBI_25367 |
| T1336 | 838-845 | Chemical | denotes | glucose | http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167 |
| T1338 | 856-863 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T65 | 733-755 | http://purl.obolibrary.org/obo/GO_0098631 | denotes | cell adhesion molecule |
| T66 | 733-746 | http://purl.obolibrary.org/obo/GO_0007155 | denotes | cell adhesion |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T397 | 0-74 | Sentence | denotes | CoV HEs are functionally similar to influenza virus C/D HEF glycoproteins. |
| T398 | 75-249 | Sentence | denotes | In CoV, the S glycoprotein recognizes the 9-O-Ac-SA sugar, while the HE acts as the RDE enzyme with SA-O-acetyl-esterase activity to release virions from infected host cells. |
| T399 | 250-310 | Sentence | denotes | For example, HCoV-OC43 also has a similar HE as an RDE [71]. |
| T400 | 311-392 | Sentence | denotes | In influenza C and D viruses, HEF glycoproteins act similarly to the CoV HE [74]. |
| T401 | 393-455 | Sentence | denotes | In influenza A virus, RDE NA releases virions from host cells. |
| T402 | 456-877 | Sentence | denotes | However, MERS-CoV does not have a similar enzyme and thus MER-CoV binding to SA receptors is mediated by energetically reversible interactions of the lipid rafts with increased SA receptors [75], thus enhancing dipeptidyl peptidase 4 (DPP4) or carcinoembryonic antigen-related cell adhesion molecule 5 (CEACAM5) recognition power and viral entry [76] and membrane-associated 78-kDa glucose-regulated protein (GRP78) [77]. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32604730-30679277-51944031 | 306-308 | 30679277 | denotes | 71 |
| 32604730-26816272-51944032 | 388-390 | 26816272 | denotes | 74 |
| 32604730-28923942-51944033 | 647-649 | 28923942 | denotes | 75 |
| 32604730-27489282-51944034 | 803-805 | 27489282 | denotes | 76 |
| T1253 | 306-308 | 30679277 | denotes | 71 |
| T30147 | 388-390 | 26816272 | denotes | 74 |
| T88685 | 647-649 | 28923942 | denotes | 75 |
| T40332 | 803-805 | 27489282 | denotes | 76 |