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PMC:7352545 / 39006-43134 JSONTXT

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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T163 382-384 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T164 496-502 https://glytoucan.org/Structures/Glycans/G81533KY denotes Neu5Ac
T165 527-531 https://glytoucan.org/Structures/Glycans/G00054MO denotes SLeX
T166 546-566 https://glytoucan.org/Structures/Glycans/G00055MO denotes N-acetyl-lactosamine
T167 713-715 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T168 898-900 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T169 1046-1048 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T170 1203-1205 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T171 1486-1492 https://glytoucan.org/Structures/Glycans/G81533KY denotes Neu5Ac
T172 1637-1639 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T173 2298-2300 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T174 2349-2351 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T175 2707-2709 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T176 2807-2809 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T177 3012-3019 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose
T178 3296-3298 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T179 3317-3319 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T180 3330-3332 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T181 3519-3521 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T182 3571-3575 https://glytoucan.org/Structures/Glycans/G00054MO denotes SLeX
T183 3653-3655 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T184 3688-3690 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T185 4063-4065 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T321 105-117 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T322 161-166 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T323 209-214 Body_part denotes sugar http://purl.org/sig/ont/fma/fma82737
T324 330-342 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T325 442-454 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T326 675-688 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T327 803-816 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T328 874-886 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T329 995-1008 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T330 1052-1065 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T331 1145-1157 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T332 1180-1193 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T333 1269-1281 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T334 1298-1310 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T335 1405-1418 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T336 1604-1616 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T337 1880-1892 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T338 1906-1918 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T339 1927-1939 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T340 1951-1963 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T341 2234-2247 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T342 2263-2275 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T343 2301-2306 Body_part denotes sugar http://purl.org/sig/ont/fma/fma82737
T344 2417-2422 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T345 2519-2532 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T346 2623-2628 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T347 2780-2785 Body_part denotes lipid http://purl.org/sig/ont/fma/fma67264
T348 2907-2929 Body_part denotes cell adhesion molecule http://purl.org/sig/ont/fma/fma67214
T349 2907-2911 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T350 3012-3019 Body_part denotes glucose http://purl.org/sig/ont/fma/fma82743
T351 3030-3037 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T352 3063-3075 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T353 3101-3113 Body_part denotes erythrocytes http://purl.org/sig/ont/fma/fma62845
T354 3162-3178 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T355 3173-3178 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T356 3191-3203 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T357 3361-3373 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T358 3390-3402 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T359 3475-3487 Body_part denotes cell surface http://purl.org/sig/ont/fma/fma67653
T360 3475-3479 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T361 3608-3621 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T362 3821-3833 Body_part denotes erythrocytes http://purl.org/sig/ont/fma/fma62845
T363 3931-3935 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T364 4074-4086 Body_part denotes carbohydrate http://purl.org/sig/ont/fma/fma82737

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T132 5-13 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T133 118-126 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T134 139-148 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T135 779-788 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T136 965-974 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T137 1445-1454 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T138 1573-1582 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T139 1792-1801 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T140 2016-2025 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T141 2089-2098 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T142 2131-2140 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T143 2210-2219 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T144 2488-2497 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T145 2570-2579 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T146 4002-4011 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T529 38-41 http://purl.obolibrary.org/obo/CLO_0051568 denotes SAs
T530 71-74 http://purl.obolibrary.org/obo/CLO_0051568 denotes SAs
T531 161-166 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T532 365-368 http://purl.obolibrary.org/obo/CLO_0001618 denotes a 9
T533 365-368 http://purl.obolibrary.org/obo/CLO_0001619 denotes a 9
T534 365-368 http://purl.obolibrary.org/obo/CLO_0001620 denotes a 9
T535 771-774 http://purl.obolibrary.org/obo/CLO_0053120 denotes HEs
T536 789-794 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T537 957-960 http://purl.obolibrary.org/obo/CLO_0053120 denotes HEs
T538 975-980 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T539 1046-1051 http://purl.obolibrary.org/obo/CLO_0051568 denotes SA. S
T540 1084-1087 http://purl.obolibrary.org/obo/CLO_0051568 denotes SAs
T541 1104-1107 http://purl.obolibrary.org/obo/CLO_0051568 denotes SAs
T542 1326-1328 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T543 1455-1460 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T544 1461-1462 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T545 1463-1466 http://purl.obolibrary.org/obo/CLO_0051582 denotes HAs
T546 1831-1834 http://purl.obolibrary.org/obo/CLO_0051568 denotes SAs
T547 2099-2104 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T548 2105-2106 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T549 2107-2108 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T550 2141-2146 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T551 2147-2148 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T552 2149-2150 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T553 2163-2173 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T554 2178-2181 http://purl.obolibrary.org/obo/CLO_0053120 denotes HEs
T555 2220-2225 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T556 2370-2378 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T557 2417-2422 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T558 2452-2455 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T559 2456-2457 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T560 2480-2482 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T561 2506-2513 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T562 2580-2581 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T563 2582-2587 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T564 2623-2628 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T565 2662-2663 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T566 2907-2911 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T567 2985-2993 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T568 3095-3100 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T569 3101-3113 http://purl.obolibrary.org/obo/CL_0000232 denotes erythrocytes
T570 3127-3132 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T571 3144-3149 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T572 3162-3172 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T573 3173-3178 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T574 3266-3269 http://purl.obolibrary.org/obo/CLO_0051568 denotes SAs
T575 3453-3456 http://purl.obolibrary.org/obo/CLO_0051568 denotes SAs
T576 3475-3479 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T577 3529-3530 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T578 3554-3557 http://purl.obolibrary.org/obo/CLO_0051568 denotes SAs
T579 3778-3780 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T580 3790-3792 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T581 3815-3820 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T582 3821-3833 http://purl.obolibrary.org/obo/CL_0000232 denotes erythrocytes
T583 3931-3935 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T584 3994-3997 http://purl.obolibrary.org/obo/CLO_0051568 denotes SAs
T585 4024-4025 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1213 105-117 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T1214 286-288 Chemical denotes EM http://purl.obolibrary.org/obo/CHEBI_73507
T1215 330-342 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T1216 382-384 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T1221 396-398 Chemical denotes EM http://purl.obolibrary.org/obo/CHEBI_73507
T1222 442-454 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T1223 496-502 Chemical denotes Neu5Ac http://purl.obolibrary.org/obo/CHEBI_17012|http://purl.obolibrary.org/obo/CHEBI_75133
T1225 504-510 Chemical denotes Neu5Gc http://purl.obolibrary.org/obo/CHEBI_62084
T1226 546-566 Chemical denotes N-acetyl-lactosamine http://purl.obolibrary.org/obo/CHEBI_16153
T1227 548-554 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T1229 555-566 Chemical denotes lactosamine http://purl.obolibrary.org/obo/CHEBI_25001
T1230 675-688 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T1231 710-712 Chemical denotes Ac http://purl.obolibrary.org/obo/CHEBI_33337|http://purl.obolibrary.org/obo/CHEBI_40574
T1233 713-715 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T1238 737-743 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T1239 803-816 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T1240 874-886 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T1241 891-897 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T1243 898-900 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T1248 927-933 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T1249 995-1008 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T1250 1043-1045 Chemical denotes Ac http://purl.obolibrary.org/obo/CHEBI_33337|http://purl.obolibrary.org/obo/CHEBI_40574
T1252 1046-1048 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T1257 1052-1065 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T1258 1077-1083 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T1260 1097-1103 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T1262 1145-1157 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T1263 1180-1193 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T1264 1203-1205 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T1269 1231-1237 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T1271 1269-1281 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T1272 1298-1310 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T1273 1405-1418 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T1274 1486-1492 Chemical denotes Neu5Ac http://purl.obolibrary.org/obo/CHEBI_17012|http://purl.obolibrary.org/obo/CHEBI_75133
T1276 1533-1539 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T1277 1604-1616 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T1278 1634-1636 Chemical denotes Ac http://purl.obolibrary.org/obo/CHEBI_33337|http://purl.obolibrary.org/obo/CHEBI_40574
T1280 1637-1639 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T1285 1656-1664 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T1286 1686-1692 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T1288 1693-1707 Chemical denotes carbonyl group http://purl.obolibrary.org/obo/CHEBI_23019
T1289 1702-1707 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T1290 1754-1760 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T1292 1761-1773 Chemical denotes methyl group http://purl.obolibrary.org/obo/CHEBI_32875
T1293 1761-1767 Chemical denotes methyl http://purl.obolibrary.org/obo/CHEBI_29309
T1294 1768-1773 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T1295 1802-1804 Chemical denotes HA http://purl.obolibrary.org/obo/CHEBI_73924
T1296 1824-1830 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T1298 1880-1892 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T1299 1906-1918 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T1300 1927-1939 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T1301 1951-1963 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T1302 1986-1992 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T1303 2109-2111 Chemical denotes HA http://purl.obolibrary.org/obo/CHEBI_73924
T1304 2151-2153 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T1305 2234-2247 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T1306 2263-2275 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T1307 2295-2297 Chemical denotes Ac http://purl.obolibrary.org/obo/CHEBI_33337|http://purl.obolibrary.org/obo/CHEBI_40574
T1309 2298-2300 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T1314 2349-2351 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T1319 2354-2360 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T1321 2519-2532 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T1322 2593-2595 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T1323 2707-2709 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T1328 2780-2785 Chemical denotes lipid http://purl.obolibrary.org/obo/CHEBI_18059
T1329 2807-2809 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T1334 2891-2898 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T1335 2921-2929 Chemical denotes molecule http://purl.obolibrary.org/obo/CHEBI_25367
T1336 3012-3019 Chemical denotes glucose http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167
T1338 3030-3037 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T1339 3063-3075 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T1340 3191-3203 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T1341 3257-3265 Chemical denotes glycolyl http://purl.obolibrary.org/obo/CHEBI_30884
T1342 3296-3298 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T1347 3317-3319 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T1352 3330-3332 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T1357 3361-3373 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T1358 3390-3402 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T1359 3519-3521 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T1364 3608-3621 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T1365 3653-3655 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T1370 3688-3690 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T1375 3991-3993 Chemical denotes Ac http://purl.obolibrary.org/obo/CHEBI_33337|http://purl.obolibrary.org/obo/CHEBI_40574
T1377 4063-4065 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T1382 4074-4086 Chemical denotes carbohydrate http://purl.obolibrary.org/obo/CHEBI_16646
T1383 4087-4094 Chemical denotes ligands http://purl.obolibrary.org/obo/CHEBI_52214

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T64 1731-1740 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T65 2907-2929 http://purl.obolibrary.org/obo/GO_0098631 denotes cell adhesion molecule
T66 2907-2920 http://purl.obolibrary.org/obo/GO_0007155 denotes cell adhesion
T67 3873-3881 http://purl.obolibrary.org/obo/GO_0015297 denotes exchange
T68 3936-3943 http://purl.obolibrary.org/obo/GO_0009606 denotes tropism

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T382 0-4 Sentence denotes 6.2.
T383 5-98 Sentence denotes SARS-CoV-2 Recognizes 9-O-Acetyl-SAs and MERS-CoV Recognizes α2,3-SAs as Attachment Receptors
T384 99-167 Sentence denotes The S glycoprotein SARS-CoV-2 initiates infection of the host cells.
T385 168-390 Sentence denotes The molecular basis of CoV attachment to sugar/glycan receptors is an important issue, as demonstrated by recent cryo-EM defining the structure of the CoV-OC43 S glycoprotein trimer complexed with a 9-O-acetylated SA [56].
T386 391-613 Sentence denotes Cryo-EM structures of the trimeric ectodomain of S glycoprotein were observed using forms complexed with Neu5Ac, Neu5Gc, sialyl–LewisX (SLeX), α2,3-sialyl-N-acetyl-lactosamine (α2,3-SLacNAc) and α2,6-SLacNAc, respectively.
T387 614-867 Sentence denotes The receptor-binding site is commonly conserved in all CoV S glycoproteins, which attach to 9-O-Ac-SA species with similar ligand-binding pockets to the CoV HEs and influenza virus C/D HEF glycoproteins, indicating conserved recognizing structures [25].
T388 868-1009 Sentence denotes The S glycoprotein-9-O-acetyl-SA interaction resembles the ligand-binding pockets of CoV HEs and influenza virus C/D HE fusion glycoproteins.
T389 1010-1049 Sentence denotes HCoV-OC43 and BCoV recognize 9-O-Ac-SA.
T390 1050-1088 Sentence denotes S glycoproteins engage 9-O-acetyl-SAs.
T391 1089-1330 Sentence denotes The 9-O-acetyl SAs are the binding site for HCoV-OC43 S glycoprotein and related β-1 CoV S glycoproteins, however SA-binding sites on the 9-O-acetyl sialyl receptors of MERS-CoV S glycoprotein and HCoV-OC43 S glycoprotein are different [71].
T392 1331-1391 Sentence denotes Thus, CoVs use two different entry and attachment receptors.
T393 1392-1528 Sentence denotes Therefore, S glycoproteins of CoVs are distinct from influenza virus A HAs, which bind to the Neu5Ac species by conserved binding sites.
T394 1529-1782 Sentence denotes The ligand-binding sites of BCoV HE enzyme, influenza HEF enzyme and CoV S glycoprotein have evolved 9-O-Ac-SA binding through hydrogen bonding with the 9-O-acetyl carbonyl group and hydrophobic pocket formation with the 9-O-acetyl methyl group [71,72].
T395 1783-1863 Sentence denotes However, influenza HA cannot bind to 9-O-acetyl-SAs but can bind to NeuGcs [73].
T396 1864-2173 Sentence denotes The HCoV-OC43 S glycoprotein, HCoV-HKU1 S glycoprotein, BCoV S glycoprotein and PHEV S glycoprotein, therefore, share the ligand-binding specificity of influenza C/D HEF enzyme, although they are functionally more similar to influenza virus A/B HA, whereas CoV HE or influenza virus A/B NA have RDE activities
T397 2174-2248 Sentence denotes CoV HEs are functionally similar to influenza virus C/D HEF glycoproteins.
T398 2249-2423 Sentence denotes In CoV, the S glycoprotein recognizes the 9-O-Ac-SA sugar, while the HE acts as the RDE enzyme with SA-O-acetyl-esterase activity to release virions from infected host cells.
T399 2424-2484 Sentence denotes For example, HCoV-OC43 also has a similar HE as an RDE [71].
T400 2485-2566 Sentence denotes In influenza C and D viruses, HEF glycoproteins act similarly to the CoV HE [74].
T401 2567-2629 Sentence denotes In influenza A virus, RDE NA releases virions from host cells.
T402 2630-3051 Sentence denotes However, MERS-CoV does not have a similar enzyme and thus MER-CoV binding to SA receptors is mediated by energetically reversible interactions of the lipid rafts with increased SA receptors [75], thus enhancing dipeptidyl peptidase 4 (DPP4) or carcinoembryonic antigen-related cell adhesion molecule 5 (CEACAM5) recognition power and viral entry [76] and membrane-associated 78-kDa glucose-regulated protein (GRP78) [77].
T403 3052-3179 Sentence denotes MERS-CoV S glycoprotein can hemagglutinate human erythrocytes and mediates virus entry into human respiratory epithelial cells.
T404 3180-3329 Sentence denotes MERS-CoV S glycoprotein attachment is not observed for 9-O-acetylated or 5-N-glycolyl SAs, but is observed for α2,3-SA linkage over α2,6-SA linkages.
T405 3330-3493 Sentence denotes SA-binding sites of MERS-CoV S glycoprotein and HCoV-OC43 S glycoprotein are not conserved [78], although they engage α2,3-SAs on the avian host cell surface [79].
T406 3494-3599 Sentence denotes MERS-CoV recognizes α2,3-SA and to a lesser extent the α2,6-SAs and sulfated SLeX for binding preference.
T407 3600-3668 Sentence denotes Thus, S glycoproteins may have independently evolved SA recognition.
T408 3669-3952 Sentence denotes The acquisition of SA-binding ability of MERS-CoV S seems to be an evolutionarily recent event, because HKU4 S1 and HKU5 S1 cannot hemagglutinate human erythrocytes [75], indicating flexible evolutionary exchange allowing cross-species transmission towards host cell tropism of CoVs.
T409 3953-4128 Sentence denotes In conclusion, CoV recognition of 9-O-Ac-SAs for infection is based on a conserved sequence for engagement of SA-related carbohydrate ligands across CoVs and orthomyxoviruses.

2_test

Id Subject Object Predicate Lexical cue
32604730-27185912-51944026 386-388 27185912 denotes 56
32604730-30679277-51944027 1326-1328 30679277 denotes 71
32604730-30679277-51944028 1775-1777 30679277 denotes 71
32604730-22291594-51944029 1778-1780 22291594 denotes 72
32604730-23615615-51944030 1859-1861 23615615 denotes 73
32604730-30679277-51944031 2480-2482 30679277 denotes 71
32604730-26816272-51944032 2562-2564 26816272 denotes 74
32604730-28923942-51944033 2821-2823 28923942 denotes 75
32604730-27489282-51944034 2977-2979 27489282 denotes 76
32604730-29684066-51944035 3422-3424 29684066 denotes 78
32604730-21697468-51944036 3489-3491 21697468 denotes 79
32604730-28923942-51944037 3835-3837 28923942 denotes 75
T90796 386-388 27185912 denotes 56
T37653 1326-1328 30679277 denotes 71
T96455 1775-1777 30679277 denotes 71
T89087 1778-1780 22291594 denotes 72
T59852 1859-1861 23615615 denotes 73
T1253 2480-2482 30679277 denotes 71
T30147 2562-2564 26816272 denotes 74
T88685 2821-2823 28923942 denotes 75
T40332 2977-2979 27489282 denotes 76
T81260 3422-3424 29684066 denotes 78
T98799 3489-3491 21697468 denotes 79
T76930 3835-3837 28923942 denotes 75