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PMC:7352545 / 18364-19469 JSONTXT

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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T34 361-363 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T35 393-395 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T36 592-594 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T37 723-725 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T38 815-817 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T200 41-48 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T201 95-98 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T202 244-247 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T203 668-680 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T204 889-901 Body_part denotes erythrocytes http://purl.org/sig/ont/fma/fma62845

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
539 5-27 Gene denotes Hemagglutinin-Esterase Gene:17603139
552 815-817 Gene denotes SA Gene:6296
553 108-112 Species denotes CoVs Tax:11118
554 443-460 Species denotes influenza C virus Tax:11552
555 481-484 Species denotes CoV Tax:11118
556 588-591 Species denotes CoV Tax:11118
557 881-888 Species denotes chicken Tax:9031
558 1029-1046 Species denotes influenza viruses Tax:11308
559 1093-1104 Species denotes mumps virus Tax:11161
560 835-844 Species denotes influenza Tax:11552
561 1065-1074 Species denotes Newcastle Tax:11176
562 49-67 Chemical denotes HE hemagglutinates
563 514-533 Disease denotes salmon anemia virus MESH:D000740

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T78 443-452 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T79 521-527 Disease denotes anemia http://purl.obolibrary.org/obo/MONDO_0002280
T80 835-844 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T81 1029-1038 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T82 1065-1082 Disease denotes Newcastle disease http://purl.obolibrary.org/obo/MONDO_0005875
T83 1093-1098 Disease denotes mumps http://purl.obolibrary.org/obo/MONDO_0000989

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T211 99-106 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T212 118-122 http://purl.obolibrary.org/obo/CLO_0008774 denotes RDEs
T213 248-255 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T214 282-286 http://purl.obolibrary.org/obo/CLO_0008774 denotes RDEs
T215 455-460 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T216 528-533 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T217 637-644 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T218 772-775 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T219 791-799 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T220 845-846 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T221 847-848 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T222 849-856 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T223 881-888 http://purl.obolibrary.org/obo/NCBITaxon_9031 denotes chicken
T224 889-901 http://purl.obolibrary.org/obo/CL_0000232 denotes erythrocytes
T225 911-913 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T226 965-970 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T227 1039-1046 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T228 1099-1104 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T364 41-48 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T365 353-355 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T366 361-363 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T371 366-372 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T373 393-395 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T378 398-404 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T380 592-594 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T385 668-680 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T386 723-725 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T391 815-817 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T170 0-4 Sentence denotes 3.5.
T171 5-48 Sentence denotes Hemagglutinin-Esterase (HE) Dimeric Protein
T172 49-91 Sentence denotes HE hemagglutinates and destroys receptors.
T173 92-220 Sentence denotes As RNA viruses, CoVs bear RDEs, which are used in effective attachment to hosts and also reversely in detachment from the hosts.
T174 221-287 Sentence denotes For example, enveloped RNA viruses evade the hosts via their RDEs.
T175 288-392 Sentence denotes Currently, RDE-related functional enzymes such as neuraminidase (NA) and SA-O-acetyl-esterase are known.
T176 393-559 Sentence denotes SA-O-acetyl-esterase was originally identified in influenza C virus and in nidoviruses (CoV and torovirus) as well as in salmon anemia virus (teleost orthomyxovirus).
T177 560-645 Sentence denotes The origin and evolution of CoV SA-O-acetylesterases are correlated to other viruses.
T178 646-764 Sentence denotes The fusion event of S glycoprotein and HE is specific for HCoV attachment to SA-associated receptors in the host [25].
T179 765-805 Sentence denotes The HE has acetylesterase activity [26].
T180 806-915 Sentence denotes In early SA-related biology, influenza A/B viruses were found to recognize chicken erythrocytes in 1942 [27].
T181 916-991 Sentence denotes They caused hemagglutination through clumping by virus-borne hemagglutinin.
T182 992-1105 Sentence denotes These phenomena were widely found in influenza viruses, paramyxoviruses, Newcastle disease (NDV) and mumps virus.

2_test

Id Subject Object Predicate Lexical cue
32604730-25926653-51943968 801-803 25926653 denotes 26
32604730-19871229-51943969 911-913 19871229 denotes 27
T97535 801-803 25926653 denotes 26
T59612 911-913 19871229 denotes 27

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T6 521-527 Phenotype denotes anemia http://purl.obolibrary.org/obo/HP_0001903