PMC:7352545 / 17388-18362
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T179 | 6-13 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T180 | 70-77 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T181 | 182-200 | Body_part | denotes | cytoplasmic region | http://purl.org/sig/ont/fma/fma72443 |
| T182 | 208-215 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T183 | 259-266 | Body_part | denotes | cytosol | http://purl.org/sig/ont/fma/fma66836 |
| T184 | 284-296 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T185 | 303-310 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T186 | 332-339 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T187 | 346-353 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T188 | 378-385 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T189 | 449-454 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T190 | 471-478 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T191 | 649-656 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T192 | 686-693 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T193 | 705-717 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T194 | 724-736 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T195 | 760-773 | Body_part | denotes | Golgi complex | http://purl.org/sig/ont/fma/fma63843 |
| T196 | 783-798 | Body_part | denotes | protein complex | http://purl.org/sig/ont/fma/fma67906 |
| T197 | 811-818 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T198 | 819-822 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T199 | 888-896 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 534 | 171-174 | Gene | denotes | CTD | Gene:1283 |
| 535 | 918-926 | Gene | denotes | envelope | Gene:43740570 |
| 536 | 495-498 | Species | denotes | CoV | Tax:11118 |
| 537 | 515-519 | Species | denotes | CoVs | Tax:11118 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T76 | 135-138 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T200 | 83-84 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T201 | 114-115 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T202 | 222-223 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T203 | 237-242 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T204 | 312-314 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
| T205 | 394-399 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T206 | 449-454 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T207 | 555-563 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
| T208 | 783-798 | http://purl.obolibrary.org/obo/GO_0043234 | denotes | protein complex |
| T209 | 912-917 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T210 | 953-958 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T344 | 6-13 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T345 | 29-31 | Chemical | denotes | TM | http://purl.obolibrary.org/obo/CHEBI_55460|http://purl.obolibrary.org/obo/CHEBI_74861 |
| T347 | 70-77 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T348 | 85-87 | Chemical | denotes | MW | http://purl.obolibrary.org/obo/CHEBI_74709 |
| T349 | 208-215 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T350 | 284-296 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T351 | 303-310 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T352 | 332-339 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T353 | 346-353 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T354 | 378-385 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T355 | 471-478 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T356 | 649-656 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T357 | 686-693 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T358 | 705-717 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T359 | 724-736 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T360 | 779-782 | Chemical | denotes | M-N | http://purl.obolibrary.org/obo/CHEBI_141442 |
| T361 | 783-790 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T362 | 811-818 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T363 | 888-896 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T37 | 237-251 | http://purl.obolibrary.org/obo/GO_0019068 | denotes | virus assembly |
| T38 | 577-588 | http://purl.obolibrary.org/obo/GO_0006810 | denotes | transported |
| T39 | 597-607 | http://purl.obolibrary.org/obo/GO_0006887 | denotes | exocytosis |
| T40 | 737-746 | http://purl.obolibrary.org/obo/GO_0051235 | denotes | retention |
| T41 | 864-878 | http://purl.obolibrary.org/obo/GO_0019068 | denotes | viral assembly |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T163 | 0-98 | Sentence | denotes | The M protein contains three TM domains and is an abundant structural protein with a MW of 30 kDa. |
| T164 | 99-201 | Sentence | denotes | It consists of a small glycosylated NTD in the extracellular region and CTD in the cytoplasmic region. |
| T165 | 202-316 | Sentence | denotes | The M protein forms a scaffold for virus assembly in the cytosol via binding to S glycoprotein and N protein [22]. |
| T166 | 317-508 | Sentence | denotes | For example, E protein and N protein are co-expressed with M protein to form virus-like particles (VLPs) that are released from the cells, as the M and E protein are involved in CoV assembly. |
| T167 | 509-634 | Sentence | denotes | Then, CoVs bud into the ERGIC, trafficking by membrane vesicles and transported via the exocytosis-secretory pathway [23,24]. |
| T168 | 635-774 | Sentence | denotes | The dimeric M protein binds to the nucleocapsid.-M protein binds to S glycoprotein for S glycoprotein retention in the ERGIC/Golgi complex. |
| T169 | 775-974 | Sentence | denotes | The M-N protein complex keeps the N protein–RNA complex stable, for nucleocapsid and the viral assembly.-M and E proteins constitute the virus envelope for successful release of virus-like particles. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32604730-19120977-51943965 | 312-314 | 19120977 | denotes | 22 |
| 32604730-31226023-51943966 | 627-629 | 31226023 | denotes | 23 |
| 32604730-23698585-51943967 | 630-632 | 23698585 | denotes | 24 |
| T66447 | 312-314 | 19120977 | denotes | 22 |
| T81165 | 627-629 | 31226023 | denotes | 23 |
| T62246 | 630-632 | 23698585 | denotes | 24 |