PMC:7352545 / 17357-18362
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T178 | 14-26 | Body_part | denotes | Glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T179 | 37-44 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T180 | 101-108 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T181 | 213-231 | Body_part | denotes | cytoplasmic region | http://purl.org/sig/ont/fma/fma72443 |
| T182 | 239-246 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T183 | 290-297 | Body_part | denotes | cytosol | http://purl.org/sig/ont/fma/fma66836 |
| T184 | 315-327 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T185 | 334-341 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T186 | 363-370 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T187 | 377-384 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T188 | 409-416 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T189 | 480-485 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T190 | 502-509 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T191 | 680-687 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T192 | 717-724 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T193 | 736-748 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T194 | 755-767 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T195 | 791-804 | Body_part | denotes | Golgi complex | http://purl.org/sig/ont/fma/fma63843 |
| T196 | 814-829 | Body_part | denotes | protein complex | http://purl.org/sig/ont/fma/fma67906 |
| T197 | 842-849 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T198 | 850-853 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T199 | 919-927 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 534 | 202-205 | Gene | denotes | CTD | Gene:1283 |
| 535 | 949-957 | Gene | denotes | envelope | Gene:43740570 |
| 536 | 526-529 | Species | denotes | CoV | Tax:11118 |
| 537 | 546-550 | Species | denotes | CoVs | Tax:11118 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T76 | 166-169 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T199 | 5-13 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | Membrane |
| T200 | 114-115 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T201 | 145-146 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T202 | 253-254 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T203 | 268-273 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T204 | 343-345 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
| T205 | 425-430 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T206 | 480-485 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T207 | 586-594 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
| T208 | 814-829 | http://purl.obolibrary.org/obo/GO_0043234 | denotes | protein complex |
| T209 | 943-948 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T210 | 984-989 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T343 | 14-26 | Chemical | denotes | Glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T344 | 37-44 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T345 | 60-62 | Chemical | denotes | TM | http://purl.obolibrary.org/obo/CHEBI_55460|http://purl.obolibrary.org/obo/CHEBI_74861 |
| T347 | 101-108 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T348 | 116-118 | Chemical | denotes | MW | http://purl.obolibrary.org/obo/CHEBI_74709 |
| T349 | 239-246 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T350 | 315-327 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T351 | 334-341 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T352 | 363-370 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T353 | 377-384 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T354 | 409-416 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T355 | 502-509 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T356 | 680-687 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T357 | 717-724 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T358 | 736-748 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T359 | 755-767 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T360 | 810-813 | Chemical | denotes | M-N | http://purl.obolibrary.org/obo/CHEBI_141442 |
| T361 | 814-821 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T362 | 842-849 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T363 | 919-927 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T37 | 268-282 | http://purl.obolibrary.org/obo/GO_0019068 | denotes | virus assembly |
| T38 | 608-619 | http://purl.obolibrary.org/obo/GO_0006810 | denotes | transported |
| T39 | 628-638 | http://purl.obolibrary.org/obo/GO_0006887 | denotes | exocytosis |
| T40 | 768-777 | http://purl.obolibrary.org/obo/GO_0051235 | denotes | retention |
| T41 | 895-909 | http://purl.obolibrary.org/obo/GO_0019068 | denotes | viral assembly |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T161 | 0-4 | Sentence | denotes | 3.4. |
| T162 | 5-30 | Sentence | denotes | Membrane Glycoprotein (M) |
| T163 | 31-129 | Sentence | denotes | The M protein contains three TM domains and is an abundant structural protein with a MW of 30 kDa. |
| T164 | 130-232 | Sentence | denotes | It consists of a small glycosylated NTD in the extracellular region and CTD in the cytoplasmic region. |
| T165 | 233-347 | Sentence | denotes | The M protein forms a scaffold for virus assembly in the cytosol via binding to S glycoprotein and N protein [22]. |
| T166 | 348-539 | Sentence | denotes | For example, E protein and N protein are co-expressed with M protein to form virus-like particles (VLPs) that are released from the cells, as the M and E protein are involved in CoV assembly. |
| T167 | 540-665 | Sentence | denotes | Then, CoVs bud into the ERGIC, trafficking by membrane vesicles and transported via the exocytosis-secretory pathway [23,24]. |
| T168 | 666-805 | Sentence | denotes | The dimeric M protein binds to the nucleocapsid.-M protein binds to S glycoprotein for S glycoprotein retention in the ERGIC/Golgi complex. |
| T169 | 806-1005 | Sentence | denotes | The M-N protein complex keeps the N protein–RNA complex stable, for nucleocapsid and the viral assembly.-M and E proteins constitute the virus envelope for successful release of virus-like particles. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32604730-19120977-51943965 | 343-345 | 19120977 | denotes | 22 |
| 32604730-31226023-51943966 | 658-660 | 31226023 | denotes | 23 |
| 32604730-23698585-51943967 | 661-663 | 23698585 | denotes | 24 |
| T66447 | 343-345 | 19120977 | denotes | 22 |
| T81165 | 658-660 | 31226023 | denotes | 23 |
| T62246 | 661-663 | 23698585 | denotes | 24 |