PMC:7352545 / 15761-16749
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T142 | 3-6 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T143 | 22-29 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T144 | 51-54 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T145 | 55-61 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T146 | 69-76 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T147 | 102-105 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T148 | 106-112 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T149 | 140-147 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T150 | 169-172 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T151 | 314-319 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T152 | 365-368 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T153 | 421-429 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T154 | 492-499 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T155 | 516-519 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T156 | 530-537 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T157 | 552-560 | Body_part | denotes | glycogen | http://purl.org/sig/ont/fma/fma82747 |
| T158 | 616-623 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T159 | 765-767 | Body_part | denotes | A1 | http://purl.org/sig/ont/fma/fma66592 |
| T160 | 775-777 | Body_part | denotes | A1 | http://purl.org/sig/ont/fma/fma66592 |
| T161 | 803-807 | Body_part | denotes | mRNA | http://purl.org/sig/ont/fma/fma67122 |
| T162 | 894-901 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T163 | 963-969 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 510 | 129-132 | Gene | denotes | CTD | Gene:1283 |
| 511 | 725-767 | Gene | denotes | heterogeneous nuclear ribonucleoprotein A1 | Gene:3178 |
| 512 | 769-777 | Gene | denotes | hnRNP A1 | Gene:3178 |
| 513 | 860-867 | Gene | denotes | hnRNPA1 | Gene:3178 |
| 514 | 222-225 | Gene | denotes | PDB | Gene:5131 |
| 515 | 236-239 | Species | denotes | CoV | Tax:11118 |
| 516 | 325-328 | Species | denotes | CoV | Tax:11118 |
| 517 | 605-613 | Species | denotes | SARS-CoV | Tax:694009 |
| 518 | 697-705 | Species | denotes | SARS-CoV | Tax:694009 |
| 519 | 883-891 | Species | denotes | SARS-CoV | Tax:694009 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T67 | 121-124 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
| T69 | 605-613 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T70 | 697-705 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T71 | 883-891 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T186 | 7-14 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T187 | 314-319 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T188 | 685-693 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
| T189 | 910-911 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T317 | 22-29 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T318 | 69-76 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T319 | 140-147 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T320 | 400-412 | Chemical | denotes | nucleic acid | http://purl.obolibrary.org/obo/CHEBI_33696 |
| T321 | 408-412 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T322 | 421-429 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T323 | 492-499 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T324 | 530-537 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T325 | 552-560 | Chemical | denotes | glycogen | http://purl.obolibrary.org/obo/CHEBI_28087 |
| T326 | 616-623 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T327 | 824-831 | Chemical | denotes | nucleus | http://purl.obolibrary.org/obo/CHEBI_33252 |
| T328 | 894-901 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T20 | 187-200 | http://purl.obolibrary.org/obo/GO_0003968 | denotes | transcriptase |
| T21 | 187-200 | http://purl.obolibrary.org/obo/GO_0003899 | denotes | transcriptase |
| T22 | 251-274 | http://purl.obolibrary.org/obo/GO_0045087 | denotes | innate immune responses |
| T23 | 329-342 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
| T24 | 365-379 | http://purl.obolibrary.org/obo/GO_0034337 | denotes | RNA chaperones |
| T25 | 516-529 | http://purl.obolibrary.org/obo/GO_0034337 | denotes | RNA chaperone |
| T26 | 586-600 | http://purl.obolibrary.org/obo/GO_0016310 | denotes | phosphorylates |
| T27 | 803-816 | http://purl.obolibrary.org/obo/GO_0000398 | denotes | mRNA splicing |
| T28 | 803-816 | http://purl.obolibrary.org/obo/GO_0000394 | denotes | mRNA splicing |
| T29 | 803-816 | http://purl.obolibrary.org/obo/GO_0000374 | denotes | mRNA splicing |
| T30 | 803-816 | http://purl.obolibrary.org/obo/GO_0000373 | denotes | mRNA splicing |
| T31 | 803-816 | http://purl.obolibrary.org/obo/GO_0000372 | denotes | mRNA splicing |
| T32 | 808-816 | http://purl.obolibrary.org/obo/GO_0045292 | denotes | splicing |
| T33 | 847-858 | http://purl.obolibrary.org/obo/GO_0006412 | denotes | translation |
| T34 | 928-941 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
| T35 | 970-982 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | biosynthesis |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T142 | 0-62 | Sentence | denotes | In RNA viruses, the N protein recognizes the viral RNA genome. |
| T143 | 63-82 | Sentence | denotes | The N protein (PDB: |
| T144 | 83-133 | Sentence | denotes | 6M3M) binds to the RNA genome via the NTD and CTD. |
| T145 | 134-215 | Sentence | denotes | The N protein tethers to the viral RNA and replicase–transcriptase complex (RTC). |
| T146 | 216-226 | Sentence | denotes | NSP3 (PDB: |
| T147 | 227-284 | Sentence | denotes | 6VXS) of CoV blocks the innate immune responses of hosts. |
| T148 | 285-467 | Sentence | denotes | After entrance into the host cells, for CoV transcription and particle release, RNA chaperones such as nonspecific nucleic acid binding proteins potentiate ssRNA conformation shifts. |
| T149 | 468-538 | Sentence | denotes | Representatively, the N protein is known as the RNA chaperone protein. |
| T150 | 539-711 | Sentence | denotes | For example, glycogen synthase kinase 3 (GSK3) phosphorylates the SARS-CoV N-protein and thus, GSK3 inhibition contributes to reduced replication activity of SARS-CoV [19]. |
| T151 | 712-988 | Sentence | denotes | In addition, heterogeneous nuclear ribonucleoprotein A1 (hnRNP A1) regulates the preformed mRNA splicing in the nucleus and continuous translation. hnRNPA1 interacts with SARS-CoV N protein to form a replication and transcription complex during ssRNA genome biosynthesis [20]. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32604730-15862300-51943963 | 984-986 | 15862300 | denotes | 20 |
| T39967 | 984-986 | 15862300 | denotes | 20 |