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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T4 1889-1896 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose
T5 2087-2094 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose
T6 2253-2260 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose
T7 2460-2467 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T8 731-736 Body_part denotes joint http://purl.org/sig/ont/fma/fma7490
T9 1491-1514 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T10 1883-1888 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T11 1889-1896 Body_part denotes glucose http://purl.org/sig/ont/fma/fma82743
T12 2081-2086 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T13 2087-2094 Body_part denotes glucose http://purl.org/sig/ont/fma/fma82743
T14 2247-2252 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T15 2253-2260 Body_part denotes glucose http://purl.org/sig/ont/fma/fma82743
T16 2454-2459 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T17 2460-2467 Body_part denotes glucose http://purl.org/sig/ont/fma/fma82743

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T5 1491-1514 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T6 1497-1514 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T7 1883-1888 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T8 2081-2086 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T9 2247-2252 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T10 2454-2459 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
88 56-103 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
89 105-115 Species denotes SARS-CoV-2 Tax:2697049
90 506-514 Species denotes patients Tax:9606
91 774-782 Species denotes patients Tax:9606
92 36-45 Disease denotes pneumonia MESH:D011014
93 125-149 Disease denotes coronavirus disease 2019 MESH:C000657245
94 151-159 Disease denotes COVID-19 MESH:C000657245
95 206-215 Disease denotes infection MESH:D007239
96 453-461 Disease denotes COVID-19 MESH:C000657245
97 520-524 Disease denotes died MESH:D003643
98 528-536 Disease denotes COVID-19 MESH:C000657245
99 799-804 Disease denotes death MESH:D003643
119 1304-1312 Species denotes patients Tax:9606
120 925-933 Disease denotes diabetes MESH:D003920
121 991-1000 Disease denotes mortality MESH:D003643
122 1035-1051 Disease denotes chronic diseases MESH:D002908
123 1061-1084 Disease denotes cardiovascular diseases MESH:D002318
124 1086-1110 Disease denotes cerebrovascular diseases MESH:D002561
125 1112-1118 Disease denotes cancer MESH:D009369
126 1123-1133 Disease denotes infections MESH:D007239
127 1247-1261 Disease denotes hyperglycaemia
128 1291-1300 Disease denotes mortality MESH:D003643
129 1329-1337 Disease denotes diabetes MESH:D003920
130 1444-1458 Disease denotes hyperglycaemia
131 1497-1524 Disease denotes respiratory tract infection MESH:D012141
132 1609-1623 Disease denotes hyperglycaemia
133 1665-1674 Disease denotes mortality MESH:D003643
134 1680-1713 Disease denotes severe acute respiratory syndrome MESH:D045169
135 1715-1719 Disease denotes SARS MESH:D045169
136 1730-1762 Disease denotes Middle East respiratory syndrome MESH:D018352
137 1764-1768 Disease denotes MERS MESH:D018352
157 2325-2333 Species denotes patients Tax:9606
158 2527-2535 Species denotes patients Tax:9606
159 2710-2718 Species denotes patients Tax:9606
160 1889-1896 Chemical denotes glucose MESH:D005947
161 2087-2094 Chemical denotes glucose MESH:D005947
162 2253-2260 Chemical denotes glucose MESH:D005947
163 2460-2467 Chemical denotes glucose MESH:D005947
164 1821-1829 Disease denotes diabetes MESH:D003920
165 1856-1870 Disease denotes hyperglycaemia
166 2020-2029 Disease denotes mortality MESH:D003643
167 2037-2045 Disease denotes COVID-19 MESH:C000657245
168 2188-2197 Disease denotes mortality MESH:D003643
169 2359-2367 Disease denotes diabetes MESH:D003920
170 2395-2403 Disease denotes COVID-19 MESH:C000657245
171 2518-2526 Disease denotes COVID-19 MESH:C000657245
172 2554-2562 Disease denotes diabetes MESH:D003920
173 2688-2697 Disease denotes mortality MESH:D003643
174 2701-2709 Disease denotes COVID-19 MESH:C000657245
175 2748-2756 Disease denotes diabetes MESH:D003920

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T27 36-45 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T28 56-103 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T29 56-89 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T30 105-113 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T31 105-109 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T32 125-149 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T33 151-159 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T34 206-215 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T35 453-461 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T36 528-536 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T37 925-933 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T38 1061-1084 Disease denotes cardiovascular diseases http://purl.obolibrary.org/obo/MONDO_0004995
T39 1086-1110 Disease denotes cerebrovascular diseases http://purl.obolibrary.org/obo/MONDO_0011057
T40 1112-1118 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T41 1123-1133 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T42 1329-1337 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T43 1497-1524 Disease denotes respiratory tract infection http://purl.obolibrary.org/obo/MONDO_0024355
T44 1515-1524 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T45 1680-1713 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T46 1715-1719 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T47 1821-1829 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T48 2037-2045 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T49 2352-2367 Disease denotes type 2 diabetes http://purl.obolibrary.org/obo/MONDO_0005148
T50 2359-2367 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T51 2395-2403 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T52 2518-2526 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T53 2554-2562 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T54 2701-2709 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T55 2748-2756 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T17 34-35 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 303-304 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 317-319 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T20 400-403 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T21 487-488 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T22 731-736 http://purl.obolibrary.org/obo/UBERON_0000982 denotes joint
T23 731-736 http://purl.obolibrary.org/obo/UBERON_0004905 denotes joint
T24 1010-1011 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 1367-1368 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 1491-1514 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T27 1570-1571 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 1628-1629 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 1722-1724 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T30 1786-1787 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T31 1883-1888 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T32 1883-1888 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T33 2081-2086 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T34 2081-2086 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T35 2247-2252 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T36 2247-2252 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T37 2454-2459 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T38 2454-2459 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T39 2563-2566 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T8 1889-1896 Chemical denotes glucose http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167
T10 2087-2094 Chemical denotes glucose http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167
T12 2253-2260 Chemical denotes glucose http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167
T14 2460-2467 Chemical denotes glucose http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T5 36-45 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T6 1061-1084 Phenotype denotes cardiovascular diseases http://purl.obolibrary.org/obo/HP_0001626
T7 1112-1118 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T8 1491-1524 Phenotype denotes lower respiratory tract infection http://purl.obolibrary.org/obo/HP_0002783
T9 2352-2367 Phenotype denotes type 2 diabetes http://purl.obolibrary.org/obo/HP_0005978

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T18 0-12 Sentence denotes Introduction
T19 13-198 Sentence denotes Since December 2019, a pneumonia caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), dubbed coronavirus disease 2019 (COVID-19) hit Wuhan, Hubei province, China [1].
T20 199-335 Sentence denotes As the infection quickly spread around the globe to an alarming level, the WHO unprecedentedly declared a pandemic on 11 March 2020 [2].
T21 336-486 Sentence denotes As of 6 June 2020, the number of affected countries and regions has soared to 216, with more than 6,600,000 cases of COVID-19 confirmed worldwide [3].
T22 487-563 Sentence denotes A total of 392,000 patients have died of COVID-19, according to the WHO [3].
T23 564-809 Sentence denotes The crude fatality ratio (CFR) stood at 5.9% as of 6 June 2020 [3], whereas, at the inception of the outbreak, the overall CFR was 17.3%, as reported by the WHO–China joint mission [1], and even moderately ill patients may progress to death [1].
T24 810-912 Sentence denotes Therefore, it is crucial to assess the prognosis of the illness early and start intervention promptly.
T25 913-1203 Sentence denotes As we know, diabetes is an established risk factor for significantly elevated mortality rates in a wide array of acute or chronic diseases, such as cardiovascular diseases, cerebrovascular diseases, cancer and infections due to poor glycaemic control and chronic hyperglycaemic state [4–7].
T26 1204-1342 Sentence denotes In addition, one study showed that fasting hyperglycaemia was strongly correlated with mortality in patients with or without diabetes [7].
T27 1343-1554 Sentence denotes Evidence indicated that a chronic hyperglycaemic state was associated with impaired immunity [6] and hyperglycaemia is an independent predictor for lower respiratory tract infection and poor prognosis [6, 8–10].
T28 1555-1775 Sentence denotes In particular, a few previous studies have shown that hyperglycaemia was a risk factor for high morbidity and mortality from severe acute respiratory syndrome (SARS) [11] and Middle East respiratory syndrome (MERS) [12].
T29 1776-2051 Sentence denotes Recently, a descriptive study suggested that diabetes and/or acute uncontrolled hyperglycaemia (defined as blood glucose measurements >10 mmol/l twice within any 24 h period) were associated with an increased length of hospital stay and higher mortality due to COVID-19 [13].
T30 2052-2409 Sentence denotes Furthermore, well-controlled blood glucose (glycaemic variability within 3.9–10.0 mmol/l) was reportedly associated with markedly lower mortality compared with individuals with poorly controlled blood glucose (upper limit of glycaemic variability exceeding 10.0 mmol/l) in patients with pre-existing type 2 diabetes during hospitalisation for COVID-19 [14].
T31 2410-2593 Sentence denotes However, direct correlation between fasting blood glucose (FBG) level at admission and clinical outcomes of COVID-19 patients without diagnosed diabetes has not been well established.
T32 2594-2774 Sentence denotes Therefore, in this study, we examined the association between FBG on admission and the 28-day mortality of COVID-19 patients without previously diagnosed diabetes in two hospitals.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T25 56-68 SP_7 denotes severe acute
T26 69-80 SP_7;UBERON:0001004 denotes respiratory
T27 81-103 SP_7 denotes syndrome coronavirus 2
T28 105-115 SP_7 denotes SARS-CoV-2
T29 125-136 NCBITaxon:11118 denotes coronavirus
T30 151-159 SP_7 denotes COVID-19
T31 242-247 UBERON:0010230 denotes globe
T32 453-461 SP_7 denotes COVID-19
T33 520-524 GO:0016265 denotes died
T34 528-536 SP_7 denotes COVID-19
T35 731-736 UBERON:0004905 denotes joint
T36 799-804 GO:0016265 denotes death
T37 1061-1075 UBERON:0004535 denotes cardiovascular
T38 1086-1101 UBERON:0002037 denotes cerebrovascular
T39 1146-1163 GO:0042593 denotes glycaemic control
T40 1491-1514 UBERON:0001558 denotes lower respiratory tract
T41 1693-1704 UBERON:0001004 denotes respiratory
T42 1715-1719 SP_10 denotes SARS
T43 1742-1753 UBERON:0001004 denotes respiratory
T44 1764-1768 SP_9 denotes MERS
T45 1883-1888 UBERON:0000178 denotes blood
T46 1889-1896 CHEBI:17234;CHEBI:17234 denotes glucose
T47 2037-2045 SP_7 denotes COVID-19
T48 2081-2086 UBERON:0000178 denotes blood
T49 2087-2094 CHEBI:17234;CHEBI:17234 denotes glucose
T50 2096-2105 GO:0006096 denotes glycaemic
T51 2212-2223 NCBITaxon:1 denotes individuals
T52 2247-2252 UBERON:0000178 denotes blood
T53 2253-2260 CHEBI:17234;CHEBI:17234 denotes glucose
T54 2395-2403 SP_7 denotes COVID-19
T55 2454-2459 UBERON:0000178 denotes blood
T56 2460-2467 CHEBI:17234;CHEBI:17234 denotes glucose
T57 2518-2526 SP_7 denotes COVID-19
T58 2701-2709 SP_7 denotes COVID-19
T38415 56-68 SP_7 denotes severe acute
T64578 69-80 SP_7;UBERON:0001004 denotes respiratory
T83189 81-103 SP_7 denotes syndrome coronavirus 2
T5919 105-115 SP_7 denotes SARS-CoV-2
T15546 125-136 NCBITaxon:11118 denotes coronavirus
T30752 151-159 SP_7 denotes COVID-19
T61266 242-247 UBERON:0010230 denotes globe
T69012 453-461 SP_7 denotes COVID-19
T57578 520-524 GO:0016265 denotes died
T67116 528-536 SP_7 denotes COVID-19
T21712 731-736 UBERON:0004905 denotes joint
T54460 799-804 GO:0016265 denotes death
T39743 1061-1075 UBERON:0004535 denotes cardiovascular
T88465 1086-1101 UBERON:0002037 denotes cerebrovascular
T68220 1146-1163 GO:0042593 denotes glycaemic control
T26403 1491-1514 UBERON:0001558 denotes lower respiratory tract
T56144 1693-1704 UBERON:0001004 denotes respiratory
T25141 1715-1719 SP_10 denotes SARS
T75374 1742-1753 UBERON:0001004 denotes respiratory
T96831 1764-1768 SP_9 denotes MERS
T19940 1883-1888 UBERON:0000178 denotes blood
T27216 1889-1896 CHEBI:17234;CHEBI:17234 denotes glucose
T1202 2037-2045 SP_7 denotes COVID-19
T2372 2081-2086 UBERON:0000178 denotes blood
T71811 2087-2094 CHEBI:17234;CHEBI:17234 denotes glucose
T10236 2096-2105 GO:0006096 denotes glycaemic
T73398 2212-2223 NCBITaxon:1 denotes individuals
T10462 2247-2252 UBERON:0000178 denotes blood
T53093 2253-2260 CHEBI:17234;CHEBI:17234 denotes glucose
T4989 2395-2403 SP_7 denotes COVID-19
T6599 2454-2459 UBERON:0000178 denotes blood
T29866 2460-2467 CHEBI:17234;CHEBI:17234 denotes glucose
T7283 2518-2526 SP_7 denotes COVID-19
T96096 2701-2709 SP_7 denotes COVID-19

2_test

Id Subject Object Predicate Lexical cue
32647915-28114552-25482960 1198-1199 28114552 denotes 4
32647915-29784146-25482960 1198-1199 29784146 denotes 4
32647915-26656292-25482960 1198-1199 26656292 denotes 4
32647915-21366474-25482960 1198-1199 21366474 denotes 4
32647915-21366474-25482961 1339-1340 21366474 denotes 7
32647915-26656292-25482962 1437-1438 26656292 denotes 6
32647915-26656292-25482963 1545-1546 26656292 denotes 6
32647915-19808918-25482964 1548-1549 19808918 denotes 8
32647915-15793178-25482964 1548-1549 15793178 denotes 8
32647915-16759303-25482965 1722-1724 16759303 denotes 11
32647915-31855530-25482966 1771-1773 31855530 denotes 12
32647915-32369736-25482967 2405-2407 32369736 denotes 14