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PMC:7347402 / 13675-14569 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T63 222-227 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T64 261-266 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T65 470-475 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T40 222-227 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T41 261-266 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T42 470-475 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T43 628-633 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
387 14-23 Disease denotes pneumonia MESH:D011014
398 292-295 Gene denotes age Gene:5973
399 394-402 Species denotes patients Tax:9606
400 417-429 Species denotes participants Tax:9606
401 104-113 Disease denotes pneumonia MESH:D011014
402 329-338 Disease denotes pneumonia MESH:D011014
403 385-393 Disease denotes COVID-19 MESH:C000657245
404 443-452 Disease denotes pneumonia MESH:D011014
405 564-572 Disease denotes COVID-19 MESH:C000657245
406 606-615 Disease denotes pneumonia MESH:D011014
407 884-893 Disease denotes pneumonia MESH:D011014

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T133 14-23 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T134 33-36 Disease denotes CRB http://purl.obolibrary.org/obo/MONDO_0008764
T135 104-113 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T136 329-338 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T137 385-393 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T138 443-452 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T139 508-511 Disease denotes CRB http://purl.obolibrary.org/obo/MONDO_0008764
T140 564-572 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T141 574-577 Disease denotes CRB http://purl.obolibrary.org/obo/MONDO_0008764
T142 606-615 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T143 681-684 Disease denotes CRB http://purl.obolibrary.org/obo/MONDO_0008764
T144 700-703 Disease denotes CRB http://purl.obolibrary.org/obo/MONDO_0008764
T145 721-724 Disease denotes CRB http://purl.obolibrary.org/obo/MONDO_0008764
T146 793-796 Disease denotes CRB http://purl.obolibrary.org/obo/MONDO_0008764
T147 884-893 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T160 43-44 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T161 222-227 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T162 222-227 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T163 261-266 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T164 261-266 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T165 309-311 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T166 470-475 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T167 619-620 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T168 737-740 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3–4
T169 817-820 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3–4

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T43 14-23 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T44 104-113 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T45 329-338 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T46 443-452 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T47 606-615 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T48 884-893 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T120 0-32 Sentence denotes Assessment of pneumonia severity
T121 33-158 Sentence denotes CRB-65 is a generally accepted tool used for assessing the severity of pneumonia because of its simplicity and effectiveness.
T122 159-317 Sentence denotes It is based on confusion, respiratory rate (>30/min), systolic blood pressure (≤90 mmHg) or diastolic blood pressure (≤60 mmHg), and age (≥65 years) [22, 23].
T123 318-573 Sentence denotes Given that pneumonia is the major clinical feature of hospitalised COVID-19 patients [24], and all participants enrolled had pneumonia, as confirmed by chest computed tomography (CT) scans, CRB-65 was used in this study to assess the severity of COVID-19.
T124 574-792 Sentence denotes CRB-65 measures the severity of pneumonia on a 0 to 4 scale, and we grouped scores into three risk levels (CRB-65 score of 0; CRB-65 score of 1–2; CRB-65 score of 3–4) according to Ewig et al [23] and Lepper et al [9].
T125 793-894 Sentence denotes CRB-65 score 0, 1–2 and 3–4 are, respectively, representative of mild, moderate and severe pneumonia.

2_test

Id Subject Object Predicate Lexical cue
32647915-22903962-25482972 309-311 22903962 denotes 22
32647915-19454409-25482973 313-315 19454409 denotes 23
32647915-32105637-25482974 404-406 32105637 denotes 24
32647915-19454409-25482975 767-769 19454409 denotes 23