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PMC:7346000 / 4985-6594 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T10 137-142 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T11 374-387 Body_part denotes immune system http://purl.org/sig/ont/fma/fma9825
T12 739-744 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T13 857-861 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T14 1028-1032 Body_part denotes axis http://purl.org/sig/ont/fma/fma12520
T15 1209-1218 Body_part denotes stem-cell http://purl.org/sig/ont/fma/fma63368
T16 1214-1218 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T4 374-387 Body_part denotes immune system http://purl.obolibrary.org/obo/UBERON_0002405
T5 857-861 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
175 411-421 Species denotes SARS-CoV-2 Tax:2697049
176 482-495 Species denotes coronaviruses Tax:11118
177 1523-1531 Species denotes patients Tax:9606
178 230-241 Species denotes Aspergillus Tax:746128
179 0-11 Disease denotes Viral entry
180 16-25 Disease denotes infection MESH:D007239
181 460-470 Disease denotes infections MESH:D007239
182 585-589 Disease denotes ARDS MESH:D012128
183 857-868 Disease denotes lung injury MESH:D055370
184 936-948 Disease denotes inflammation MESH:D007249
185 952-967 Disease denotes fungal diseases MESH:D009181
186 1154-1167 Disease denotes aspergillosis MESH:D001228
187 1326-1335 Disease denotes infection MESH:D007239
188 1476-1488 Disease denotes inflammation MESH:D007249
189 1514-1522 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T66 16-25 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T67 411-419 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T68 460-470 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T69 585-589 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T70 607-611 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T71 862-868 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T72 936-948 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T73 1154-1167 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T74 1326-1335 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T75 1476-1488 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T76 1514-1522 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T77 1604-1608 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T37 137-142 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T38 173-182 http://purl.obolibrary.org/obo/SO_0000418 denotes signaling
T39 374-387 http://purl.obolibrary.org/obo/UBERON_0002405 denotes immune system
T40 693-699 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T41 739-744 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T42 775-782 http://purl.obolibrary.org/obo/SO_0000418 denotes signals
T43 857-861 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T44 857-861 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T45 1169-1171 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T46 1209-1218 http://purl.obolibrary.org/obo/CL_0000034 denotes stem-cell
T47 1273-1274 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T48 1301-1310 http://purl.obolibrary.org/obo/SO_0000418 denotes signaling

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T26 693-709 Chemical denotes signal molecules http://purl.obolibrary.org/obo/CHEBI_62488
T27 700-709 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T28 996-1027 Chemical denotes advanced glycation end-products http://purl.obolibrary.org/obo/CHEBI_84123
T29 1378-1381 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T6 36-51 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T7 123-136 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune
T8 173-191 http://purl.obolibrary.org/obo/GO_0007165 denotes signaling pathways
T9 173-182 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T10 693-709 http://purl.obolibrary.org/obo/GO_0048018 denotes signal molecules
T11 824-845 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammatory response
T12 936-948 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T13 1116-1137 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammatory response
T14 1301-1310 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T15 1436-1448 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T16 1476-1488 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T14 1378-1381 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T29 0-143 Sentence denotes Viral entry and infection elicit an immune response, which is initiated by the establishment of an inflammatory cascade by innate immune cells.
T30 144-422 Sentence denotes Although the receptor(s) and signaling pathways involved in the immune recognition of Aspergillus and the downstream production of inflammatory mediators are relatively well characterized [15], not much is known regarding how the immune system senses and responds to SARS-CoV-2.
T31 423-612 Sentence denotes Based on the available knowledge for infections with other coronaviruses, two possible mechanisms can be anticipated and are likely to explain the development of ARDS and consequently CAPA.
T32 613-874 Sentence denotes The first involves the release of danger-associated molecular patterns (DAMPs), signal molecules released by dying or damaged cells that act as endogenous danger signals to promote and exacerbate the immune and inflammatory response leading to lung injury [16].
T33 875-973 Sentence denotes It is noteworthy that DAMPs have also been shown to regulate inflammation in fungal diseases [17].
T34 974-1173 Sentence denotes The DAMP/receptor for advanced glycation end-products axis was found to integrate with Toll-like receptors (TLRs) to generate and amplify the inflammatory response in experimental aspergillosis [18].
T35 1174-1387 Sentence denotes Moreover, recipients of allogeneic stem-cell transplantation harboring genetic variants underlying a hyperactivation of danger signaling in response to infection displayed an increased risk of developing IPA [19].
T36 1388-1609 Sentence denotes This emerging concept could help explain fungal pathogenesis in conditions of exuberant inflammation such as that observed in COVID-19 patients and highlights DAMP targeting as potential immunomodulatory strategy in CAPA.

2_test

Id Subject Object Predicate Lexical cue
32599813-28919635-60095070 333-335 28919635 denotes 15
32599813-23097158-60095071 870-872 23097158 denotes 16
32599813-22973279-60095072 969-971 22973279 denotes 17
32599813-21423669-60095073 1169-1171 21423669 denotes 18
32599813-22114731-60095074 1383-1385 22114731 denotes 19