PMC:7346000 / 25760-27751
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T60 | 1655-1662 | Body_part | denotes | trachea | http://purl.org/sig/ont/fma/fma7394 |
| T61 | 1787-1791 | Body_part | denotes | face | http://purl.org/sig/ont/fma/fma24728 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T29 | 1655-1662 | Body_part | denotes | trachea | http://purl.obolibrary.org/obo/UBERON_0003126 |
| T30 | 1667-1674 | Body_part | denotes | bronchi | http://purl.obolibrary.org/obo/UBERON_0002185 |
| T31 | 1787-1791 | Body_part | denotes | face | http://purl.obolibrary.org/obo/UBERON_0001456 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 731 | 84-106 | Species | denotes | Acinetobacter baumanii | Tax:470 |
| 732 | 709-717 | Species | denotes | patients | Tax:9606 |
| 733 | 791-812 | Species | denotes | human metapneumovirus | Tax:162145 |
| 734 | 1045-1053 | Species | denotes | patients | Tax:9606 |
| 735 | 1448-1458 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 736 | 1846-1856 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 737 | 1958-1966 | Species | denotes | patients | Tax:9606 |
| 738 | 133-144 | Species | denotes | Aspergillus | Tax:746128 |
| 739 | 602-613 | Species | denotes | Aspergillus | Tax:746128 |
| 740 | 22-48 | Disease | denotes | viral secondary infections | MESH:D001102 |
| 741 | 52-65 | Disease | denotes | co-infections | MESH:D060085 |
| 742 | 73-82 | Disease | denotes | mortality | MESH:D003643 |
| 743 | 345-358 | Disease | denotes | co-infections | MESH:D060085 |
| 744 | 454-463 | Disease | denotes | infection | MESH:D007239 |
| 745 | 694-708 | Disease | denotes | critically ill | MESH:D016638 |
| 746 | 762-766 | Disease | denotes | ARDS | MESH:D012128 |
| 747 | 773-785 | Disease | denotes | Co-infection | MESH:D060085 |
| 748 | 927-935 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 749 | 1017-1032 | Disease | denotes | viral infection | MESH:D001102 |
| 750 | 1036-1044 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 751 | 1091-1099 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 752 | 1107-1122 | Disease | denotes | viral infection | MESH:D001102 |
| 753 | 1385-1393 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 754 | 1655-1662 | Disease | denotes | trachea | MESH:C557675 |
| 755 | 1739-1768 | Disease | denotes | Aspergillus tracheobronchitis | MESH:D001228 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T207 | 38-48 | Disease | denotes | infections | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T208 | 55-65 | Disease | denotes | infections | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T209 | 108-128 | Disease | denotes | Klebsiella pneumonia | http://purl.obolibrary.org/obo/MONDO_0030602 |
| T210 | 119-128 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T211 | 328-332 | Disease | denotes | CAPA | http://purl.obolibrary.org/obo/MONDO_0007163 |
| T212 | 348-358 | Disease | denotes | infections | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T213 | 454-463 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T214 | 762-766 | Disease | denotes | ARDS | http://purl.obolibrary.org/obo/MONDO_0006502 |
| T215 | 776-785 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T216 | 866-870 | Disease | denotes | CAPA | http://purl.obolibrary.org/obo/MONDO_0007163 |
| T217 | 927-935 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T218 | 1017-1032 | Disease | denotes | viral infection | http://purl.obolibrary.org/obo/MONDO_0005108 |
| T219 | 1023-1032 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T220 | 1036-1044 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T221 | 1091-1099 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T222 | 1107-1122 | Disease | denotes | viral infection | http://purl.obolibrary.org/obo/MONDO_0005108 |
| T223 | 1113-1122 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T224 | 1385-1393 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T225 | 1448-1456 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T226 | 1751-1768 | Disease | denotes | tracheobronchitis | http://purl.obolibrary.org/obo/MONDO_0021925 |
| T227 | 1846-1854 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T209 | 275-277 | http://purl.obolibrary.org/obo/CLO_0001407 | denotes | 52 |
| T210 | 396-397 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T211 | 630-637 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
| T212 | 670-671 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T213 | 719-721 | http://purl.obolibrary.org/obo/CLO_0001527 | denotes | 94 |
| T214 | 791-796 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T215 | 813-816 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T216 | 936-940 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T217 | 1054-1057 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T218 | 1300-1311 | http://purl.obolibrary.org/obo/OBI_0000968 | denotes | instruments |
| T219 | 1787-1791 | http://purl.obolibrary.org/obo/UBERON_0001456 | denotes | face |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T187 | 614-621 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
| T188 | 773-775 | Chemical | denotes | Co | http://purl.obolibrary.org/obo/CHEBI_27638 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T36 | 1017-1032 | http://purl.obolibrary.org/obo/GO_0016032 | denotes | viral infection |
| T37 | 1107-1122 | http://purl.obolibrary.org/obo/GO_0016032 | denotes | viral infection |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T53 | 119-128 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T136 | 0-83 | Sentence | denotes | Bacterial, fungal and viral secondary infections or co-infections affect mortality. |
| T137 | 84-225 | Sentence | denotes | Acinetobacter baumanii, Klebsiella pneumonia and Aspergillus species are important nosocomial pathogens [93] complicating the disease course. |
| T138 | 226-333 | Sentence | denotes | Studies from France [51], Germany [50], Belgium [52], and the Netherlands [47], underline the role of CAPA. |
| T139 | 334-432 | Sentence | denotes | Diagnosing co-infections is complex and rapid diagnosis plays a crucial role in this setting [49]. |
| T140 | 433-601 | Sentence | denotes | Close monitoring for infection development is needed, as well as longitudinal sampling throughout the disease course using culture dependent and independent techniques. |
| T141 | 602-772 | Sentence | denotes | Aspergillus antigen and PCR testing of respiratory fluids should be a routine procedure for critically ill patients [94], specifically for those suffering from ARDS [50]. |
| T142 | 773-883 | Sentence | denotes | Co-infection with human metapneumovirus has been reported in two of five cases in the German CAPA series [50]. |
| T143 | 884-1072 | Sentence | denotes | It is unknown whether hospitals caring for COVID-19 test comprehensive respiratory pathogen panels, and to date no analysis of mixed viral infection in COVID-19 patients has been reported. |
| T144 | 1073-1210 | Sentence | denotes | In the context of COVID-19, mixed viral infection may be misinterpreted as presence of innocent bystanders and thus remain underreported. |
| T145 | 1211-1324 | Sentence | denotes | With bronchoalveolar lavage and autopsy regarded as high-risk procedures, key diagnostic instruments are lacking. |
| T146 | 1325-1483 | Sentence | denotes | Autopsy studies are key to understanding pathophysiology of COVID-19 [95] and are critically enlighten interaction between SARS-CoV-2 and different pathogens. |
| T147 | 1484-1640 | Sentence | denotes | With availability of lower respiratory samples, normally obtained by BALF, the quality of microbiological and virological work up would be greatly improved. |
| T148 | 1641-1769 | Sentence | denotes | Inspection of trachea and bronchi is achieved by bronchoscopy, which is critical to find possible Aspergillus tracheobronchitis. |
| T149 | 1770-1991 | Sentence | denotes | Thus, physicians face the dilemma of taking the hazard of aerosolization of SARS-CoV-2, risking transmission versus the endeavor of facilitating the optimal diagnosis and treatment to the patients entrusted to their care. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32599813-32339350-60095161 | 261-263 | 32339350 | denotes | 50 |
| 32599813-32488446-60095162 | 275-277 | 32488446 | denotes | 52 |
| 32599813-31905234-60095163 | 719-721 | 31905234 | denotes | 94 |
| 32599813-32339350-60095164 | 768-770 | 32339350 | denotes | 50 |
| 32599813-32339350-60095165 | 879-881 | 32339350 | denotes | 50 |
| 32599813-32437596-60095166 | 1395-1397 | 32437596 | denotes | 95 |