PMC:7346000 / 20580-21484
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T53 | 584-590 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
| T54 | 735-740 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T55 | 809-815 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T22 | 584-590 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
| T23 | 735-740 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T24 | 809-815 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 584 | 408-416 | Species | denotes | patients | Tax:9606 |
| 585 | 895-903 | Species | denotes | patients | Tax:9606 |
| 586 | 357-368 | Species | denotes | Aspergillus | Tax:746128 |
| 587 | 281-283 | Chemical | denotes | GM | MESH:C012990 |
| 588 | 614-616 | Chemical | denotes | GM | MESH:C012990 |
| 589 | 741-743 | Chemical | denotes | GM | MESH:C012990 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T189 | 158-162 | Disease | denotes | CAPA | http://purl.obolibrary.org/obo/MONDO_0007163 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T163 | 111-113 | http://purl.obolibrary.org/obo/CLO_0001407 | denotes | 52 |
| T164 | 270-271 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T165 | 396-398 | http://purl.obolibrary.org/obo/CLO_0001000 | denotes | 35 |
| T166 | 432-433 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T167 | 455-456 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T168 | 536-538 | http://purl.obolibrary.org/obo/CLO_0053794 | denotes | 41 |
| T169 | 607-608 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T170 | 617-625 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test was |
| T171 | 653-654 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T172 | 686-687 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T173 | 756-757 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T174 | 839-841 | http://purl.obolibrary.org/obo/CLO_0054055 | denotes | 71 |
| T175 | 888-891 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 1/1 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T121 | 281-283 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120 |
| T122 | 287-290 | Chemical | denotes | LFD | http://purl.obolibrary.org/obo/CHEBI_73571 |
| T123 | 614-616 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120 |
| T124 | 741-743 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120 |
| T125 | 848-851 | Chemical | denotes | LFD | http://purl.obolibrary.org/obo/CHEBI_73571 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T30 | 866-875 | http://purl.obolibrary.org/obo/GO_0046903 | denotes | secretion |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T7 | 281-283 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
| T8 | 614-616 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
| T9 | 741-743 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T109 | 0-332 | Sentence | denotes | In published cases and case series from Germany [50,61], France [51,57,58], Italy [59], Austria [60], Belgium [52], Australia [63], and the Netherlands [47], CAPA was most commonly mycologically diagnosed by either culture from BALF or tracheal aspirate and/or based on a positive GM or LFD from BALF or tracheal aspirate (Table 1). |
| T110 | 333-591 | Sentence | denotes | Across published cases, Aspergillus culture was positive in 29/35 (83%) of patients; of those with a positive culture and a reported source, 16/29 (55%) were recovered from—often undirected—BALF, 12/29 (41%) from tracheal aspirate, and 1/29 (3%) from sputum. |
| T111 | 592-774 | Sentence | denotes | In those where a BALF GM test was performed, 14/23 (61%) had a titer ≥1.5 ODI and 16/23 (70%) a titer ≥0.5 ODI, while 6/28 (21%) of those with serum GM results had a titer > 0.5 ODI. |
| T112 | 775-904 | Sentence | denotes | PCR from respiratory specimens or tissue was positive in 10/14 (71%) and LFD from tracheal secretion positive in 1/1 of patients. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32599813-32339350-60095142 | 49-51 | 32339350 | denotes | 50 |
| 32599813-32470620-60095143 | 83-85 | 32470620 | denotes | 59 |
| 32599813-32488446-60095144 | 111-113 | 32488446 | denotes | 52 |