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PMC:7346000 / 12888-13733 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T38 81-89 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T39 201-205 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T40 726-734 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T8 201-205 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
377 38-56 Disease denotes pulmonary fibrosis MESH:D011658
378 129-137 Disease denotes toxicity MESH:D064420
379 179-186 Disease denotes hypoxia MESH:D000860
380 195-212 Disease denotes acute lung injury MESH:D055371
381 274-292 Disease denotes pulmonary fibrosis MESH:D011658
382 367-375 Disease denotes COVID-19 MESH:C000657245
383 503-518 Disease denotes viral infection MESH:D001102
384 640-644 Disease denotes ARDS MESH:D012128
385 818-838 Disease denotes secondary infections MESH:D060085

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T132 38-56 Disease denotes pulmonary fibrosis http://purl.obolibrary.org/obo/MONDO_0002771
T133 195-212 Disease denotes acute lung injury http://purl.obolibrary.org/obo/MONDO_0006502|http://purl.obolibrary.org/obo/MONDO_0015796
T135 206-212 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T136 274-292 Disease denotes pulmonary fibrosis http://purl.obolibrary.org/obo/MONDO_0002771
T137 367-375 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T138 463-467 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T139 503-518 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T140 509-518 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T141 540-544 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T142 640-644 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T143 828-838 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T90 96-105 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated
T91 159-165 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway
T92 201-205 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T93 201-205 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T94 343-344 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T95 573-575 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T76 119-127 Chemical denotes antigens http://purl.obolibrary.org/obo/CHEBI_59132
T77 147-152 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T78 338-341 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T80 408-422 Chemical denotes corticosteroid http://purl.obolibrary.org/obo/CHEBI_50858
T81 599-614 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T82 655-670 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T28 503-518 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection
T29 697-713 http://purl.obolibrary.org/obo/GO_0006955 denotes immune responses

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T28 38-56 Phenotype denotes pulmonary fibrosis http://purl.obolibrary.org/obo/HP_0002206
T29 81-95 Phenotype denotes cytokine storm http://purl.obolibrary.org/obo/HP_0033041
T30 179-186 Phenotype denotes hypoxia http://purl.obolibrary.org/obo/HP_0012418
T31 195-212 Phenotype denotes acute lung injury http://www.orpha.net/ORDO/Orphanet_178320
T32 274-292 Phenotype denotes pulmonary fibrosis http://purl.obolibrary.org/obo/HP_0002206
T33 338-341 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T34 726-740 Phenotype denotes cytokine storm http://purl.obolibrary.org/obo/HP_0033041

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T67 0-254 Sentence denotes There are some reports revealing that pulmonary fibrosis can be triggered by the cytokine storm activated by the viral antigens, toxicity posed by drugs, high airway pressure and hypoxia-induced acute lung injury secondary to mechanical ventilation [53].
T68 255-519 Sentence denotes While interstitial pulmonary fibrosis per se does not predispose to development of IPA, a small subset of these COVID-19 survivors may require long term corticosteroid treatment, which may predispose them to CAPA years after the acute phase of the viral infection.
T69 520-625 Sentence denotes Overall, 29% of the CAPA cases published to date (10/35) had received systemic corticosteroids (Table 1).
T70 626-845 Sentence denotes In those with ARDS, systemic corticosteroids are used to alleviate the immune responses and prevent cytokine storm [6,54,55,56], but may at the same time increase vulnerability for developing secondary infections [4,5].

2_test

Id Subject Object Predicate Lexical cue
32599813-32242738-60095110 747-749 32242738 denotes 55
32599813-30076119-60095111 840-841 30076119 denotes 4
32599813-22895826-60095112 842-843 22895826 denotes 5