PMC:7346000 / 11108-12272
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 337 | 85-93 | Species | denotes | patients | Tax:9606 |
| 338 | 532-540 | Species | denotes | patients | Tax:9606 |
| 339 | 712-720 | Species | denotes | patients | Tax:9606 |
| 340 | 792-800 | Species | denotes | patients | Tax:9606 |
| 341 | 116-124 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 342 | 342-348 | Disease | denotes | Cancer | MESH:D009369 |
| 343 | 349-375 | Disease | denotes | Invasive Fungal Infections | MESH:D000072742 |
| 344 | 420-427 | Disease | denotes | Allergy | MESH:D004342 |
| 345 | 432-451 | Disease | denotes | Infectious Diseases | MESH:D003141 |
| 346 | 571-583 | Disease | denotes | malignancies | MESH:D009369 |
| 347 | 806-814 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T118 | 116-124 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T119 | 342-348 | Disease | denotes | Cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T120 | 420-427 | Disease | denotes | Allergy | http://purl.obolibrary.org/obo/MONDO_0005271 |
| T121 | 432-442 | Disease | denotes | Infectious | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T122 | 452-459 | Disease | denotes | Mycoses | http://purl.obolibrary.org/obo/MONDO_0002041 |
| T123 | 806-814 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T80 | 196-200 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T81 | 299-311 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | Organization |
| T82 | 501-506 | http://purl.obolibrary.org/obo/CLO_0009985 | denotes | focus |
| T83 | 829-832 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T84 | 942-944 | http://purl.obolibrary.org/obo/CLO_0053794 | denotes | 41 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T59 | 33-36 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
| T61 | 479-482 | Chemical | denotes | MSG | http://purl.obolibrary.org/obo/CHEBI_64220|http://purl.obolibrary.org/obo/CHEBI_64243 |
| T63 | 614-617 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
| T65 | 910-913 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
| T67 | 970-973 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
| T69 | 1019-1022 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
| T71 | 1079-1081 | Chemical | denotes | IA | http://purl.obolibrary.org/obo/CHEBI_74062 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T27 | 17-29 | http://purl.obolibrary.org/obo/GO_0009405 | denotes | pathogenesis |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T19 | 33-36 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
| T20 | 342-348 | Phenotype | denotes | Cancer | http://purl.obolibrary.org/obo/HP_0002664 |
| T21 | 349-375 | Phenotype | denotes | Invasive Fungal Infections | http://purl.obolibrary.org/obo/HP_0020101 |
| T22 | 420-427 | Phenotype | denotes | Allergy | http://purl.obolibrary.org/obo/HP_0012393 |
| T23 | 614-617 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
| T24 | 910-913 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
| T25 | 970-973 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
| T26 | 1019-1022 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T61 | 0-244 | Sentence | denotes | Importantly, the pathogenesis of IPA differs between neutropenic and non-neutropenic patients, including those with COVID-19, impacting clinical presentation, radiological findings and diagnostic test results in the mycology laboratory [41,42]. |
| T62 | 245-823 | Sentence | denotes | Despite these important differences, revised European Organization for Research and Treatment of Cancer/Invasive Fungal Infections Cooperative Group and National Institute of Allergy and Infectious Diseases Mycoses Study Group (EORTC/MSG) definitions [43] focus primarily on neutropenic patients with underlying hematological malignancies and “typical” presentation of IPA and have been shown to have limited applicability and inferior performance in non-neutropenic patients who frequently do not fulfil radiological and host criteria, including patients with COVID-19 [41,44]. |
| T63 | 824-1164 | Sentence | denotes | This has resulted in the creation of an alternative clinical algorithm for diagnosing IPA in the ICU setting in 2012 [41], which defines putative IPA and is now the standard of care for defining IPA in the ICU [4,45], where highly reliable definitions of IA are still missing (work on improved definitions is currently in progress [45,46]). |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32599813-30565352-60095094 | 237-239 | 30565352 | denotes | 41 |
| 32599813-31802125-60095095 | 497-499 | 31802125 | denotes | 43 |
| 32599813-30565352-60095096 | 816-818 | 30565352 | denotes | 41 |
| 32599813-22517788-60095097 | 819-821 | 22517788 | denotes | 44 |
| 32599813-30565352-60095098 | 942-944 | 30565352 | denotes | 41 |
| 32599813-30076119-60095099 | 1035-1036 | 30076119 | denotes | 4 |
| 32599813-32330523-60095100 | 1037-1039 | 32330523 | denotes | 45 |
| 32599813-32330523-60095101 | 1156-1158 | 32330523 | denotes | 45 |
| 32599813-30426598-60095102 | 1159-1161 | 30426598 | denotes | 46 |