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PMC:7344504 / 821-2041 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
50 308-316 Species denotes patients Tax:9606
51 404-412 Species denotes patients Tax:9606
52 440-448 Species denotes patients Tax:9606
53 470-478 Species denotes patients Tax:9606
54 720-728 Species denotes patients Tax:9606
55 1129-1150 Species denotes Aspergillus fumigatus Tax:746128
56 1156-1166 Species denotes SARS-CoV-2 Tax:2697049
57 1192-1199 Species denotes patient Tax:9606
58 1005-1010 Chemical denotes azole MESH:D001393
59 1113-1118 Chemical denotes azole MESH:D001393
60 49-73 Disease denotes coronavirus disease 2019 MESH:C000657245
61 75-83 Disease denotes COVID-19 MESH:C000657245
62 151-183 Disease denotes invasive pulmonary aspergillosis MESH:D055744
63 193-202 Disease denotes infection MESH:D007239
64 208-216 Disease denotes COVID-19 MESH:C000657245
65 228-251 Disease denotes pulmonary aspergillosis MESH:D055732
66 359-382 Disease denotes pulmonary abnormalities MESH:D008171
67 783-815 Disease denotes invasive pulmonary aspergillosis MESH:D055744
68 860-869 Disease denotes mortality MESH:D003643
69 961-983 Disease denotes invasive aspergillosis MESH:D055744
70 988-996 Disease denotes infected MESH:D007239
71 1057-1066 Disease denotes mortality MESH:D003643

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T7 49-73 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T8 75-83 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T9 170-183 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T10 193-202 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T11 208-216 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T12 238-251 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T13 253-257 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T14 523-527 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T15 604-608 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T16 686-695 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T17 703-712 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T18 802-815 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T19 961-983 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T20 970-983 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T21 1156-1164 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T7 262-263 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 437-439 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T9 665-668 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T10 729-732 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T11 1154-1155 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T8 185-188 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T10 880-883 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T12 1005-1010 Chemical denotes azole http://purl.obolibrary.org/obo/CHEBI_68452
T13 1113-1118 Chemical denotes azole http://purl.obolibrary.org/obo/CHEBI_68452

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T9 0-2 Sentence denotes 1.
T10 3-15 Sentence denotes Introduction
T11 16-207 Sentence denotes There have been suggestions that coronavirus disease 2019 (COVID-19) might increase the risk of superinfections [1] and, particularly, invasive pulmonary aspergillosis (IPA) co-infection [2].
T12 208-383 Sentence denotes COVID-19-associated pulmonary aspergillosis (CAPA) is a recently described disease entity affecting patients in intensive care unit (ICUs) with severe pulmonary abnormalities.
T13 384-570 Sentence denotes Small cohorts of 31 patients in the Netherlands [3], 27 patients in France [4] and 19 patients in Germany [5] have been published, showing CAPA rates of 19.4%, 33% and 26%, respectively.
T14 571-638 Sentence denotes An additional two fatal cases of CAPA were recently reported [6,7].
T15 639-894 Sentence denotes The numbers resemble what has been observed in influenza, where influenza in ICU patients has been identified as an independent risk factor for invasive pulmonary aspergillosis and which is associated with an even higher mortality rate than IPA alone [8].
T16 895-1083 Sentence denotes In addition, in the Netherlands, an estimated 11.3% of cases with invasive aspergillosis are infected with an azole-resistant isolate [9], potentially increasing mortality to 50–100% [10].
T17 1084-1220 Sentence denotes We present the first case of azole-resistant Aspergillus fumigatus in a SARS-CoV-2-positive immunocompetent patient admitted to the ICU.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 151-183 Phenotype denotes invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T2 185-188 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T3 783-815 Phenotype denotes invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T4 880-883 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103

2_test

Id Subject Object Predicate Lexical cue
32517166-32361747-60114378 129-130 32361747 denotes 1
32517166-32396381-60114379 433-434 32396381 denotes 3
32517166-32339350-60114380 491-492 32339350 denotes 5
32517166-30076119-60114381 891-892 30076119 denotes 8
32517166-32297377-60114382 1030-1031 32297377 denotes 9