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PMC:7344504 / 2943-4232 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T2 525-532 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T3 610-620 Body_part denotes leucocytes http://purl.org/sig/ont/fma/fma62852
T4 641-652 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T5 678-683 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197
T6 783-793 Body_part denotes calcitonin http://purl.org/sig/ont/fma/fma83348
T7 912-919 Body_part denotes glucose http://purl.org/sig/ont/fma/fma82743
T8 970-976 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T9 1006-1011 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 473-478 Body_part denotes Scale http://purl.obolibrary.org/obo/UBERON_0002542
T3 678-683 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T4 970-976 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T5 1006-1011 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T6 1166-1183 Body_part denotes pleural effusions http://purl.obolibrary.org/obo/UBERON_0000175

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
108 514-532 Gene denotes C-reactive protein Gene:1401
109 534-537 Gene denotes CRP Gene:1401
110 940-950 Species denotes SARS-CoV-2 Tax:2697049
111 277-279 Chemical denotes O2 MESH:D010100
112 912-919 Chemical denotes glucose MESH:D005947
113 80-88 Disease denotes dyspneic
114 193-211 Disease denotes pulmonary wheezing MESH:D012135
115 468-472 Disease denotes Coma MESH:D003128
116 834-853 Disease denotes bacterial infection MESH:D001424
117 1166-1183 Disease denotes pleural effusions MESH:D010996

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T26 834-853 Disease denotes bacterial infection http://purl.obolibrary.org/obo/MONDO_0005113
T27 844-853 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T28 940-948 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T17 264-266 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T18 284-285 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 610-620 http://purl.obolibrary.org/obo/CL_0000738 denotes leucocytes
T20 678-683 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T21 678-683 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T22 693-713 http://purl.obolibrary.org/obo/PR_000023540 denotes alkaline phosphatase
T23 714-717 http://purl.obolibrary.org/obo/CLO_0001409 denotes 528
T24 995-996 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T25 1006-1011 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T26 1166-1183 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusions
T27 1285-1287 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T21 277-279 Chemical denotes O2 http://purl.obolibrary.org/obo/CHEBI_15379
T22 494-497 Chemical denotes ECG http://purl.obolibrary.org/obo/CHEBI_70255
T23 525-532 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T24 736-739 Chemical denotes AST http://purl.obolibrary.org/obo/CHEBI_76649
T25 748-750 Chemical denotes LD http://purl.obolibrary.org/obo/CHEBI_74332
T26 783-793 Chemical denotes calcitonin http://purl.obolibrary.org/obo/CHEBI_3306
T27 912-919 Chemical denotes glucose http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167
T29 1225-1227 Chemical denotes CO http://purl.obolibrary.org/obo/CHEBI_17245

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 702-713 http://purl.obolibrary.org/obo/GO_0016791 denotes phosphatase

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T27 0-102 Sentence denotes At presentation to the emergency department, she had been feeling progressively dyspneic for two days.
T28 103-239 Sentence denotes On physical examination, her oxygenation was 82%, with 28 breaths per minute in room air, pulmonary wheezing and an extended expiration.
T29 240-335 Sentence denotes Oxygenation improved to 94% with 5 L O2 via a nasal cannula, but she desaturated during speech.
T30 336-389 Sentence denotes Her BMI was 27.7 (80 kg) and her temperature 37.8 °C.
T31 390-455 Sentence denotes No other aberrant observations on physical examination were made.
T32 456-509 Sentence denotes Her Glasgow Coma Scale was 15 and her ECG was normal.
T33 510-939 Sentence denotes Her C-reactive protein (CRP) was 214 mg/L, and other laboratory findings included slightly elevated leucocytes (12.6 × 109 /L) and neutrophils (8.4 × 109 /L), elevated liver enzymes (alkaline phosphatase 528 U/L; GGT 376 U/L; AST 76 U/L; LD 745 U/L), slightly elevated pro-calcitonin (0.25 µg/L; <0.5 µg/L not suggestive of bacterial infection), increased ferritin (1442 µg/L), and normal electrolyte, glucose and renal function.
T34 940-994 Sentence denotes SARS-CoV-2 nasopharyngeal and throat swabs were taken.
T35 995-1220 Sentence denotes A low-dose chest CT demonstrated extensive centralized and peripheral bilateral ground glass opacities with left-sided consolidations and bilateral fibrotic bands without pleural effusions and vascular enlargement (Figure 1).
T36 1221-1289 Sentence denotes The CO-RADS score was 5 and CT-severity score was 24 out of 25 [11].

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T10 203-211 Phenotype denotes wheezing http://purl.obolibrary.org/obo/HP_0030828
T11 468-472 Phenotype denotes Coma http://purl.obolibrary.org/obo/HP_0001259
T12 669-691 Phenotype denotes elevated liver enzymes http://purl.obolibrary.org/obo/HP_0002910
T13 856-874 Phenotype denotes increased ferritin http://purl.obolibrary.org/obo/HP_0003281
T14 1166-1183 Phenotype denotes pleural effusions http://purl.obolibrary.org/obo/HP_0002202

2_test

Id Subject Object Predicate Lexical cue
32517166-32339082-60114383 1285-1287 32339082 denotes 11