PMC:7341831 / 7414-8863
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T32 | 326-332 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T33 | 625-629 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T34 | 712-726 | Body_part | denotes | bronchial wall | http://purl.org/sig/ont/fma/fma13121|http://purl.org/sig/ont/fma/fma67480 |
| T36 | 812-827 | Body_part | denotes | lung parenchyma | http://purl.org/sig/ont/fma/fma27360 |
| T37 | 857-861 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T38 | 882-890 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T39 | 1001-1014 | Body_part | denotes | blood vessels | http://purl.org/sig/ont/fma/fma63183 |
| T40 | 1001-1006 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T41 | 1287-1292 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T21 | 326-332 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T22 | 625-629 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T23 | 812-827 | Body_part | denotes | lung parenchyma | http://purl.obolibrary.org/obo/UBERON_0008946 |
| T24 | 812-816 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T25 | 817-827 | Body_part | denotes | parenchyma | http://purl.obolibrary.org/obo/UBERON_0000353 |
| T26 | 857-861 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T27 | 1001-1014 | Body_part | denotes | blood vessels | http://purl.obolibrary.org/obo/UBERON_0001981 |
| T28 | 1001-1006 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T29 | 1007-1014 | Body_part | denotes | vessels | http://purl.obolibrary.org/obo/UBERON_0000055 |
| T30 | 1287-1292 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T31 | 1428-1435 | Body_part | denotes | vessels | http://purl.obolibrary.org/obo/UBERON_0000055 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 196 | 60-68 | Species | denotes | patients | Tax:9606 |
| 197 | 207-214 | Species | denotes | patient | Tax:9606 |
| 198 | 647-654 | Species | denotes | patient | Tax:9606 |
| 199 | 1197-1205 | Species | denotes | patients | Tax:9606 |
| 200 | 1095-1097 | Chemical | denotes | GM | MESH:C012990 |
| 201 | 92-100 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 202 | 288-313 | Disease | denotes | Type II diabetes mellitus | MESH:D003924 |
| 203 | 318-340 | Disease | denotes | chronic kidney disease | MESH:D051436 |
| 204 | 668-676 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 205 | 772-793 | Disease | denotes | necrotizing pneumonia | MESH:D011014 |
| 206 | 857-868 | Disease | denotes | lung injury | MESH:D055370 |
| 207 | 882-897 | Disease | denotes | alveolar damage | MESH:D055370 |
| 208 | 930-946 | Disease | denotes | bronchopneumonia | MESH:D001996 |
| 209 | 1020-1052 | Disease | denotes | hallmark of the invasive disease | MESH:D009361 |
| 210 | 1188-1196 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 211 | 1361-1377 | Disease | denotes | invasive disease | MESH:D009361 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T54 | 92-100 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T55 | 288-313 | Disease | denotes | Type II diabetes mellitus | http://purl.obolibrary.org/obo/MONDO_0005148 |
| T56 | 296-313 | Disease | denotes | diabetes mellitus | http://purl.obolibrary.org/obo/MONDO_0005015 |
| T57 | 318-340 | Disease | denotes | chronic kidney disease | http://purl.obolibrary.org/obo/MONDO_0005300 |
| T58 | 326-340 | Disease | denotes | kidney disease | http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240 |
| T60 | 668-676 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T61 | 727-737 | Disease | denotes | ulceration | http://purl.obolibrary.org/obo/MONDO_0043839 |
| T62 | 784-793 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T63 | 851-868 | Disease | denotes | acute lung injury | http://purl.obolibrary.org/obo/MONDO_0006502|http://purl.obolibrary.org/obo/MONDO_0015796 |
| T65 | 862-868 | Disease | denotes | injury | http://purl.obolibrary.org/obo/MONDO_0021178 |
| T66 | 930-946 | Disease | denotes | bronchopneumonia | http://purl.obolibrary.org/obo/MONDO_0005682 |
| T67 | 1188-1196 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T56 | 326-332 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T57 | 326-332 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T58 | 326-332 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T59 | 625-629 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T60 | 625-629 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T61 | 645-646 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T62 | 812-816 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T63 | 812-816 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T64 | 838-839 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T65 | 857-861 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T66 | 857-861 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T67 | 1001-1014 | http://purl.obolibrary.org/obo/UBERON_0001981 | denotes | blood vessels |
| T68 | 1001-1014 | http://www.ebi.ac.uk/efo/EFO_0000817 | denotes | blood vessels |
| T69 | 1127-1128 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T70 | 1287-1292 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T71 | 1287-1292 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T72 | 1294-1295 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T73 | 1296-1300 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T74 | 1340-1341 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T75 | 1428-1435 | http://purl.obolibrary.org/obo/UBERON_0000055 | denotes | vessels |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T62 | 53-56 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
| T64 | 151-154 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
| T66 | 293-295 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T67 | 445-455 | Chemical | denotes | antifungal | http://purl.obolibrary.org/obo/CHEBI_35718 |
| T68 | 660-663 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
| T70 | 687-690 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
| T72 | 1095-1097 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
| T74 | 1265-1272 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T6 | 1095-1097 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T73 | 0-188 | Sentence | denotes | Our report illustrates the importance of considering IPA in patients with underlying severe COVID-19, who show no clear clinical impairment related to IPA throughout their hospitalization. |
| T74 | 189-342 | Sentence | denotes | In this case, the patient was likely immunologically compromised due to his underlying conditions (Type II diabetes mellitus and chronic kidney disease). |
| T75 | 343-581 | Sentence | denotes | This case underscores the need to investigate this neglected disease and allow for early tracing with antifungal treatment; however, it is necessary to consider the risks posed by the bronchoscopy that must be performed for the diagnosis. |
| T76 | 582-597 | Sentence | denotes | Antinori et al. |
| T77 | 598-898 | Sentence | denotes | 8 assessed the postmortem lung examination of a patient with IPA and COVID-19, in which IPA was characterized by bronchial wall ulceration associated with multiple spots of necrotizing pneumonia, and the residual lung parenchyma displayed a pattern of acute lung injury with diffuse alveolar damage. |
| T78 | 899-1078 | Sentence | denotes | In addition to the presence of bronchopneumonia, we distinctly show fungi (hyphae and conidia) within blood vessels, the hallmark of the invasive disease triggered by this fungus. |
| T79 | 1079-1228 | Sentence | denotes | The presence of GM in bronchoalveolar lavage is a useful marker, but this procedure is not performed in many COVID-19 patients for biosafety reasons. |
| T80 | 1229-1449 | Sentence | denotes | However, the identification of this antigen in peripheral blood, a test that is usually negative, is seemingly a reliable marker of invasive disease, especially in our case, in which the invasion of vessels was observed. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T25 | 53-56 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
| T26 | 151-154 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
| T27 | 288-313 | Phenotype | denotes | Type II diabetes mellitus | http://purl.obolibrary.org/obo/HP_0005978 |
| T28 | 318-340 | Phenotype | denotes | chronic kidney disease | http://purl.obolibrary.org/obo/HP_0012622 |
| T29 | 660-663 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
| T30 | 687-690 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
| T31 | 784-793 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T32 | 851-868 | Phenotype | denotes | acute lung injury | http://www.orpha.net/ORDO/Orphanet_178320 |
| T33 | 874-897 | Phenotype | denotes | diffuse alveolar damage | http://purl.obolibrary.org/obo/HP_0033006 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32638890-32470620-134289068 | 598-599 | 32470620 | denotes | 8 |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T133 | 92-100 | SP_7 | denotes | COVID-19 |
| T134 | 326-332 | UBERON:0002113 | denotes | kidney |
| T135 | 614-624 | GO:0016265 | denotes | postmortem |
| T136 | 625-629 | UBERON:0002048 | denotes | lung |
| T137 | 668-676 | SP_7 | denotes | COVID-19 |
| T138 | 712-721 | UBERON:0004242 | denotes | bronchial |
| T139 | 722-726 | UBERON:0000060 | denotes | wall |
| T140 | 812-827 | UBERON:0008946 | denotes | lung parenchyma |
| T141 | 857-861 | UBERON:0002048 | denotes | lung |
| T142 | 882-890 | UBERON:0003215 | denotes | alveolar |
| T143 | 967-972 | NCBITaxon:4751 | denotes | fungi |
| T144 | 1001-1014 | UBERON:0001981 | denotes | blood vessels |
| T145 | 1071-1077 | NCBITaxon:4751 | denotes | fungus |
| T146 | 1101-1116 | UBERON:0002186 | denotes | bronchoalveolar |
| T147 | 1188-1196 | SP_7 | denotes | COVID-19 |
| T148 | 1265-1272 | CHEBI:59132;CHEBI:59132 | denotes | antigen |
| T149 | 1287-1292 | UBERON:0000178 | denotes | blood |
| T150 | 1428-1435 | UBERON:0000055 | denotes | vessels |
| T82423 | 92-100 | SP_7 | denotes | COVID-19 |
| T34071 | 326-332 | UBERON:0002113 | denotes | kidney |
| T61699 | 614-624 | GO:0016265 | denotes | postmortem |
| T93941 | 625-629 | UBERON:0002048 | denotes | lung |
| T73256 | 668-676 | SP_7 | denotes | COVID-19 |
| T83346 | 712-721 | UBERON:0004242 | denotes | bronchial |
| T74144 | 722-726 | UBERON:0000060 | denotes | wall |
| T44419 | 812-827 | UBERON:0008946 | denotes | lung parenchyma |
| T67181 | 857-861 | UBERON:0002048 | denotes | lung |
| T79335 | 882-890 | UBERON:0003215 | denotes | alveolar |
| T86622 | 967-972 | NCBITaxon:4751 | denotes | fungi |
| T73261 | 1001-1014 | UBERON:0001981 | denotes | blood vessels |
| T66563 | 1071-1077 | NCBITaxon:4751 | denotes | fungus |
| T54734 | 1101-1116 | UBERON:0002186 | denotes | bronchoalveolar |
| T1262 | 1188-1196 | SP_7 | denotes | COVID-19 |
| T38840 | 1265-1272 | CHEBI:59132;CHEBI:59132 | denotes | antigen |
| T52237 | 1287-1292 | UBERON:0000178 | denotes | blood |
| T44074 | 1428-1435 | UBERON:0000055 | denotes | vessels |