PMC:7341831 / 705-3057
Annnotations
LitCovid-PD-FMA-UBERON
{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T3","span":{"begin":1268,"end":1273},"obj":"Body_part"},{"id":"T4","span":{"begin":1676,"end":1681},"obj":"Body_part"},{"id":"T5","span":{"begin":2038,"end":2042},"obj":"Body_part"}],"attributes":[{"id":"A3","pred":"fma_id","subj":"T3","obj":"http://purl.org/sig/ont/fma/fma63083"},{"id":"A4","pred":"fma_id","subj":"T4","obj":"http://purl.org/sig/ont/fma/fma9670"},{"id":"A5","pred":"fma_id","subj":"T5","obj":"http://purl.org/sig/ont/fma/fma7195"}],"text":"INTRODUCTION\nCOVID-19 is characterized by asymptomatic and/or mild flu-like symptoms; however, about 20% of patients may progress to pneumonia and sepsis, thus requiring intensive support 1 . Patients with acute respiratory distress syndrome due to viral infections, such as SARS-CoV-2, are prone to secondary complications, including aspergillosis 2 . Invasive aspergillosis is not uncommon in immunocompromised patients, and is a well-described complication in acute respiratory failure and severe influenza-related pneumonia 3 . A retrospective multicenter cohort study showed that influenza infection was an independent risk factor for invasive pulmonary aspergillosis (IPA) 4 .\nAlthough influenza-associated IPA is associated with high mortality and morbidity, its pathogenesis is not well known 3 . Direct immunomodulation and the use of drugs, such as oseltamivir and corticosteroids, may play a role 5 , 6 . Wang et al. 2 reported a patient with severe acute respiratory syndrome (SARS), who died of aspergillosis after prolonged treatment with corticosteroids. Blaize et al. 7 and Antinori et al. 8 reported fatal cases of IPA in immunocompetent patients with severe COVID-19, whose bronchoalveolar aspirate grew Aspergillus fumigatus and had a positive serum galactomannan (GM) antigen. Antinori et al. 8 evidenced the pathological pulmonary alterations postmortem and confirmed the infective Aspergillus via molecular techniques. It is possible that aspergillosis could predispose patients with COVID-19 to clinical worsening.\nTherefore, testing for the presence of Aspergillus spp in lower respiratory secretions and GM (not routinely positive in peripheral blood) in patients with COVID-19 in the intensive care unit (ICU) should be considered to allow timely treatment and avoid potential immunosuppression with the use of medications 5 , 6 . However, conducting a bronchoscopy in patients with COVID-19 is relatively contraindicated due to the biological risk and clinical deterioration caused by the procedure 9 . Lung biopsy, which might also be considered a gold standard diagnosis method, is also impractical in such a scenario.\nLatin America seems to be the most recent COVID-19 epicenter, after Asia, Europe, and the US. In Manaus, in the Brazilian Amazon, more than 2,000 deaths were officially reported in April/May 2020."}
LitCovid-PD-UBERON
{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T2","span":{"begin":1268,"end":1273},"obj":"Body_part"},{"id":"T3","span":{"begin":1676,"end":1681},"obj":"Body_part"},{"id":"T4","span":{"begin":2038,"end":2042},"obj":"Body_part"}],"attributes":[{"id":"A2","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/UBERON_0001977"},{"id":"A3","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"A4","pred":"uberon_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"}],"text":"INTRODUCTION\nCOVID-19 is characterized by asymptomatic and/or mild flu-like symptoms; however, about 20% of patients may progress to pneumonia and sepsis, thus requiring intensive support 1 . Patients with acute respiratory distress syndrome due to viral infections, such as SARS-CoV-2, are prone to secondary complications, including aspergillosis 2 . Invasive aspergillosis is not uncommon in immunocompromised patients, and is a well-described complication in acute respiratory failure and severe influenza-related pneumonia 3 . A retrospective multicenter cohort study showed that influenza infection was an independent risk factor for invasive pulmonary aspergillosis (IPA) 4 .\nAlthough influenza-associated IPA is associated with high mortality and morbidity, its pathogenesis is not well known 3 . Direct immunomodulation and the use of drugs, such as oseltamivir and corticosteroids, may play a role 5 , 6 . Wang et al. 2 reported a patient with severe acute respiratory syndrome (SARS), who died of aspergillosis after prolonged treatment with corticosteroids. Blaize et al. 7 and Antinori et al. 8 reported fatal cases of IPA in immunocompetent patients with severe COVID-19, whose bronchoalveolar aspirate grew Aspergillus fumigatus and had a positive serum galactomannan (GM) antigen. Antinori et al. 8 evidenced the pathological pulmonary alterations postmortem and confirmed the infective Aspergillus via molecular techniques. It is possible that aspergillosis could predispose patients with COVID-19 to clinical worsening.\nTherefore, testing for the presence of Aspergillus spp in lower respiratory secretions and GM (not routinely positive in peripheral blood) in patients with COVID-19 in the intensive care unit (ICU) should be considered to allow timely treatment and avoid potential immunosuppression with the use of medications 5 , 6 . However, conducting a bronchoscopy in patients with COVID-19 is relatively contraindicated due to the biological risk and clinical deterioration caused by the procedure 9 . Lung biopsy, which might also be considered a gold standard diagnosis method, is also impractical in such a scenario.\nLatin America seems to be the most recent COVID-19 epicenter, after Asia, Europe, and the US. In Manaus, in the Brazilian Amazon, more than 2,000 deaths were officially reported in April/May 2020."}
LitCovid-PubTator
{"project":"LitCovid-PubTator","denotations":[{"id":"37","span":{"begin":108,"end":116},"obj":"Species"},{"id":"38","span":{"begin":192,"end":200},"obj":"Species"},{"id":"39","span":{"begin":275,"end":285},"obj":"Species"},{"id":"40","span":{"begin":413,"end":421},"obj":"Species"},{"id":"41","span":{"begin":13,"end":21},"obj":"Disease"},{"id":"42","span":{"begin":133,"end":142},"obj":"Disease"},{"id":"43","span":{"begin":147,"end":153},"obj":"Disease"},{"id":"44","span":{"begin":206,"end":241},"obj":"Disease"},{"id":"45","span":{"begin":249,"end":265},"obj":"Disease"},{"id":"46","span":{"begin":335,"end":348},"obj":"Disease"},{"id":"47","span":{"begin":353,"end":375},"obj":"Disease"},{"id":"48","span":{"begin":469,"end":488},"obj":"Disease"},{"id":"49","span":{"begin":518,"end":527},"obj":"Disease"},{"id":"50","span":{"begin":595,"end":604},"obj":"Disease"},{"id":"51","span":{"begin":640,"end":672},"obj":"Disease"},{"id":"67","span":{"begin":944,"end":951},"obj":"Species"},{"id":"68","span":{"begin":1160,"end":1168},"obj":"Species"},{"id":"69","span":{"begin":1227,"end":1248},"obj":"Species"},{"id":"70","span":{"begin":1498,"end":1506},"obj":"Species"},{"id":"71","span":{"begin":1409,"end":1420},"obj":"Species"},{"id":"72","span":{"begin":859,"end":870},"obj":"Chemical"},{"id":"73","span":{"begin":1274,"end":1287},"obj":"Chemical"},{"id":"74","span":{"begin":1289,"end":1291},"obj":"Chemical"},{"id":"75","span":{"begin":741,"end":750},"obj":"Disease"},{"id":"76","span":{"begin":957,"end":990},"obj":"Disease"},{"id":"77","span":{"begin":992,"end":996},"obj":"Disease"},{"id":"78","span":{"begin":1011,"end":1024},"obj":"Disease"},{"id":"79","span":{"begin":1181,"end":1189},"obj":"Disease"},{"id":"80","span":{"begin":1467,"end":1480},"obj":"Disease"},{"id":"81","span":{"begin":1512,"end":1520},"obj":"Disease"},{"id":"88","span":{"begin":1686,"end":1694},"obj":"Species"},{"id":"89","span":{"begin":1903,"end":1911},"obj":"Species"},{"id":"90","span":{"begin":1583,"end":1594},"obj":"Species"},{"id":"91","span":{"begin":1635,"end":1637},"obj":"Chemical"},{"id":"92","span":{"begin":1700,"end":1708},"obj":"Disease"},{"id":"93","span":{"begin":1917,"end":1925},"obj":"Disease"},{"id":"96","span":{"begin":2198,"end":2206},"obj":"Disease"},{"id":"97","span":{"begin":2302,"end":2308},"obj":"Disease"}],"attributes":[{"id":"A37","pred":"tao:has_database_id","subj":"37","obj":"Tax:9606"},{"id":"A38","pred":"tao:has_database_id","subj":"38","obj":"Tax:9606"},{"id":"A39","pred":"tao:has_database_id","subj":"39","obj":"Tax:2697049"},{"id":"A40","pred":"tao:has_database_id","subj":"40","obj":"Tax:9606"},{"id":"A41","pred":"tao:has_database_id","subj":"41","obj":"MESH:C000657245"},{"id":"A42","pred":"tao:has_database_id","subj":"42","obj":"MESH:D011014"},{"id":"A43","pred":"tao:has_database_id","subj":"43","obj":"MESH:D018805"},{"id":"A44","pred":"tao:has_database_id","subj":"44","obj":"MESH:D012128"},{"id":"A45","pred":"tao:has_database_id","subj":"45","obj":"MESH:D001102"},{"id":"A46","pred":"tao:has_database_id","subj":"46","obj":"MESH:D001228"},{"id":"A47","pred":"tao:has_database_id","subj":"47","obj":"MESH:D055744"},{"id":"A48","pred":"tao:has_database_id","subj":"48","obj":"MESH:D012131"},{"id":"A49","pred":"tao:has_database_id","subj":"49","obj":"MESH:D011014"},{"id":"A50","pred":"tao:has_database_id","subj":"50","obj":"MESH:D007239"},{"id":"A51","pred":"tao:has_database_id","subj":"51","obj":"MESH:D055744"},{"id":"A67","pred":"tao:has_database_id","subj":"67","obj":"Tax:9606"},{"id":"A68","pred":"tao:has_database_id","subj":"68","obj":"Tax:9606"},{"id":"A69","pred":"tao:has_database_id","subj":"69","obj":"Tax:746128"},{"id":"A70","pred":"tao:has_database_id","subj":"70","obj":"Tax:9606"},{"id":"A71","pred":"tao:has_database_id","subj":"71","obj":"Tax:746128"},{"id":"A72","pred":"tao:has_database_id","subj":"72","obj":"MESH:D053139"},{"id":"A73","pred":"tao:has_database_id","subj":"73","obj":"MESH:C012990"},{"id":"A74","pred":"tao:has_database_id","subj":"74","obj":"MESH:C012990"},{"id":"A75","pred":"tao:has_database_id","subj":"75","obj":"MESH:D003643"},{"id":"A76","pred":"tao:has_database_id","subj":"76","obj":"MESH:D045169"},{"id":"A77","pred":"tao:has_database_id","subj":"77","obj":"MESH:D045169"},{"id":"A78","pred":"tao:has_database_id","subj":"78","obj":"MESH:D001228"},{"id":"A79","pred":"tao:has_database_id","subj":"79","obj":"MESH:C000657245"},{"id":"A80","pred":"tao:has_database_id","subj":"80","obj":"MESH:D001228"},{"id":"A81","pred":"tao:has_database_id","subj":"81","obj":"MESH:C000657245"},{"id":"A88","pred":"tao:has_database_id","subj":"88","obj":"Tax:9606"},{"id":"A89","pred":"tao:has_database_id","subj":"89","obj":"Tax:9606"},{"id":"A90","pred":"tao:has_database_id","subj":"90","obj":"Tax:746128"},{"id":"A91","pred":"tao:has_database_id","subj":"91","obj":"MESH:C012990"},{"id":"A92","pred":"tao:has_database_id","subj":"92","obj":"MESH:C000657245"},{"id":"A93","pred":"tao:has_database_id","subj":"93","obj":"MESH:C000657245"},{"id":"A96","pred":"tao:has_database_id","subj":"96","obj":"MESH:C000657245"},{"id":"A97","pred":"tao:has_database_id","subj":"97","obj":"MESH:D003643"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"INTRODUCTION\nCOVID-19 is characterized by asymptomatic and/or mild flu-like symptoms; however, about 20% of patients may progress to pneumonia and sepsis, thus requiring intensive support 1 . Patients with acute respiratory distress syndrome due to viral infections, such as SARS-CoV-2, are prone to secondary complications, including aspergillosis 2 . Invasive aspergillosis is not uncommon in immunocompromised patients, and is a well-described complication in acute respiratory failure and severe influenza-related pneumonia 3 . A retrospective multicenter cohort study showed that influenza infection was an independent risk factor for invasive pulmonary aspergillosis (IPA) 4 .\nAlthough influenza-associated IPA is associated with high mortality and morbidity, its pathogenesis is not well known 3 . Direct immunomodulation and the use of drugs, such as oseltamivir and corticosteroids, may play a role 5 , 6 . Wang et al. 2 reported a patient with severe acute respiratory syndrome (SARS), who died of aspergillosis after prolonged treatment with corticosteroids. Blaize et al. 7 and Antinori et al. 8 reported fatal cases of IPA in immunocompetent patients with severe COVID-19, whose bronchoalveolar aspirate grew Aspergillus fumigatus and had a positive serum galactomannan (GM) antigen. Antinori et al. 8 evidenced the pathological pulmonary alterations postmortem and confirmed the infective Aspergillus via molecular techniques. It is possible that aspergillosis could predispose patients with COVID-19 to clinical worsening.\nTherefore, testing for the presence of Aspergillus spp in lower respiratory secretions and GM (not routinely positive in peripheral blood) in patients with COVID-19 in the intensive care unit (ICU) should be considered to allow timely treatment and avoid potential immunosuppression with the use of medications 5 , 6 . However, conducting a bronchoscopy in patients with COVID-19 is relatively contraindicated due to the biological risk and clinical deterioration caused by the procedure 9 . Lung biopsy, which might also be considered a gold standard diagnosis method, is also impractical in such a scenario.\nLatin America seems to be the most recent COVID-19 epicenter, after Asia, Europe, and the US. In Manaus, in the Brazilian Amazon, more than 2,000 deaths were officially reported in April/May 2020."}
LitCovid-PD-MONDO
{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T10","span":{"begin":13,"end":21},"obj":"Disease"},{"id":"T11","span":{"begin":67,"end":70},"obj":"Disease"},{"id":"T12","span":{"begin":133,"end":142},"obj":"Disease"},{"id":"T13","span":{"begin":206,"end":241},"obj":"Disease"},{"id":"T14","span":{"begin":212,"end":241},"obj":"Disease"},{"id":"T15","span":{"begin":249,"end":265},"obj":"Disease"},{"id":"T16","span":{"begin":275,"end":283},"obj":"Disease"},{"id":"T17","span":{"begin":275,"end":279},"obj":"Disease"},{"id":"T18","span":{"begin":335,"end":348},"obj":"Disease"},{"id":"T19","span":{"begin":353,"end":375},"obj":"Disease"},{"id":"T20","span":{"begin":362,"end":375},"obj":"Disease"},{"id":"T21","span":{"begin":463,"end":488},"obj":"Disease"},{"id":"T23","span":{"begin":500,"end":509},"obj":"Disease"},{"id":"T24","span":{"begin":518,"end":527},"obj":"Disease"},{"id":"T25","span":{"begin":585,"end":604},"obj":"Disease"},{"id":"T26","span":{"begin":595,"end":604},"obj":"Disease"},{"id":"T27","span":{"begin":659,"end":672},"obj":"Disease"},{"id":"T28","span":{"begin":692,"end":701},"obj":"Disease"},{"id":"T29","span":{"begin":957,"end":990},"obj":"Disease"},{"id":"T30","span":{"begin":992,"end":996},"obj":"Disease"},{"id":"T31","span":{"begin":1011,"end":1024},"obj":"Disease"},{"id":"T32","span":{"begin":1181,"end":1189},"obj":"Disease"},{"id":"T33","span":{"begin":1467,"end":1480},"obj":"Disease"},{"id":"T34","span":{"begin":1512,"end":1520},"obj":"Disease"},{"id":"T35","span":{"begin":1700,"end":1708},"obj":"Disease"},{"id":"T36","span":{"begin":1917,"end":1925},"obj":"Disease"},{"id":"T37","span":{"begin":2198,"end":2206},"obj":"Disease"}],"attributes":[{"id":"A10","pred":"mondo_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A11","pred":"mondo_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A12","pred":"mondo_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A13","pred":"mondo_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/MONDO_0006502"},{"id":"A14","pred":"mondo_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/MONDO_0009971"},{"id":"A15","pred":"mondo_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/MONDO_0005108"},{"id":"A16","pred":"mondo_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A17","pred":"mondo_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A18","pred":"mondo_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/MONDO_0005657"},{"id":"A19","pred":"mondo_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/MONDO_0000240"},{"id":"A20","pred":"mondo_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/MONDO_0005657"},{"id":"A21","pred":"mondo_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/MONDO_0001208"},{"id":"A22","pred":"mondo_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/MONDO_0021113"},{"id":"A23","pred":"mondo_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A24","pred":"mondo_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A25","pred":"mondo_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A26","pred":"mondo_id","subj":"T26","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A27","pred":"mondo_id","subj":"T27","obj":"http://purl.obolibrary.org/obo/MONDO_0005657"},{"id":"A28","pred":"mondo_id","subj":"T28","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A29","pred":"mondo_id","subj":"T29","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A30","pred":"mondo_id","subj":"T30","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A31","pred":"mondo_id","subj":"T31","obj":"http://purl.obolibrary.org/obo/MONDO_0005657"},{"id":"A32","pred":"mondo_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A33","pred":"mondo_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/MONDO_0005657"},{"id":"A34","pred":"mondo_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A35","pred":"mondo_id","subj":"T35","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A36","pred":"mondo_id","subj":"T36","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A37","pred":"mondo_id","subj":"T37","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"}],"text":"INTRODUCTION\nCOVID-19 is characterized by asymptomatic and/or mild flu-like symptoms; however, about 20% of patients may progress to pneumonia and sepsis, thus requiring intensive support 1 . Patients with acute respiratory distress syndrome due to viral infections, such as SARS-CoV-2, are prone to secondary complications, including aspergillosis 2 . Invasive aspergillosis is not uncommon in immunocompromised patients, and is a well-described complication in acute respiratory failure and severe influenza-related pneumonia 3 . A retrospective multicenter cohort study showed that influenza infection was an independent risk factor for invasive pulmonary aspergillosis (IPA) 4 .\nAlthough influenza-associated IPA is associated with high mortality and morbidity, its pathogenesis is not well known 3 . Direct immunomodulation and the use of drugs, such as oseltamivir and corticosteroids, may play a role 5 , 6 . Wang et al. 2 reported a patient with severe acute respiratory syndrome (SARS), who died of aspergillosis after prolonged treatment with corticosteroids. Blaize et al. 7 and Antinori et al. 8 reported fatal cases of IPA in immunocompetent patients with severe COVID-19, whose bronchoalveolar aspirate grew Aspergillus fumigatus and had a positive serum galactomannan (GM) antigen. Antinori et al. 8 evidenced the pathological pulmonary alterations postmortem and confirmed the infective Aspergillus via molecular techniques. It is possible that aspergillosis could predispose patients with COVID-19 to clinical worsening.\nTherefore, testing for the presence of Aspergillus spp in lower respiratory secretions and GM (not routinely positive in peripheral blood) in patients with COVID-19 in the intensive care unit (ICU) should be considered to allow timely treatment and avoid potential immunosuppression with the use of medications 5 , 6 . However, conducting a bronchoscopy in patients with COVID-19 is relatively contraindicated due to the biological risk and clinical deterioration caused by the procedure 9 . Lung biopsy, which might also be considered a gold standard diagnosis method, is also impractical in such a scenario.\nLatin America seems to be the most recent COVID-19 epicenter, after Asia, Europe, and the US. In Manaus, in the Brazilian Amazon, more than 2,000 deaths were officially reported in April/May 2020."}
LitCovid-PD-CLO
{"project":"LitCovid-PD-CLO","denotations":[{"id":"T5","span":{"begin":430,"end":431},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T6","span":{"begin":532,"end":533},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T7","span":{"begin":901,"end":902},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T8","span":{"begin":942,"end":943},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T9","span":{"begin":1257,"end":1258},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T10","span":{"begin":1555,"end":1562},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T11","span":{"begin":1676,"end":1681},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"T12","span":{"begin":1676,"end":1681},"obj":"http://www.ebi.ac.uk/efo/EFO_0000296"},{"id":"T13","span":{"begin":1885,"end":1886},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T14","span":{"begin":2038,"end":2042},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T15","span":{"begin":2038,"end":2042},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T16","span":{"begin":2082,"end":2083},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T17","span":{"begin":2144,"end":2145},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"INTRODUCTION\nCOVID-19 is characterized by asymptomatic and/or mild flu-like symptoms; however, about 20% of patients may progress to pneumonia and sepsis, thus requiring intensive support 1 . Patients with acute respiratory distress syndrome due to viral infections, such as SARS-CoV-2, are prone to secondary complications, including aspergillosis 2 . Invasive aspergillosis is not uncommon in immunocompromised patients, and is a well-described complication in acute respiratory failure and severe influenza-related pneumonia 3 . A retrospective multicenter cohort study showed that influenza infection was an independent risk factor for invasive pulmonary aspergillosis (IPA) 4 .\nAlthough influenza-associated IPA is associated with high mortality and morbidity, its pathogenesis is not well known 3 . Direct immunomodulation and the use of drugs, such as oseltamivir and corticosteroids, may play a role 5 , 6 . Wang et al. 2 reported a patient with severe acute respiratory syndrome (SARS), who died of aspergillosis after prolonged treatment with corticosteroids. Blaize et al. 7 and Antinori et al. 8 reported fatal cases of IPA in immunocompetent patients with severe COVID-19, whose bronchoalveolar aspirate grew Aspergillus fumigatus and had a positive serum galactomannan (GM) antigen. Antinori et al. 8 evidenced the pathological pulmonary alterations postmortem and confirmed the infective Aspergillus via molecular techniques. It is possible that aspergillosis could predispose patients with COVID-19 to clinical worsening.\nTherefore, testing for the presence of Aspergillus spp in lower respiratory secretions and GM (not routinely positive in peripheral blood) in patients with COVID-19 in the intensive care unit (ICU) should be considered to allow timely treatment and avoid potential immunosuppression with the use of medications 5 , 6 . However, conducting a bronchoscopy in patients with COVID-19 is relatively contraindicated due to the biological risk and clinical deterioration caused by the procedure 9 . Lung biopsy, which might also be considered a gold standard diagnosis method, is also impractical in such a scenario.\nLatin America seems to be the most recent COVID-19 epicenter, after Asia, Europe, and the US. In Manaus, in the Brazilian Amazon, more than 2,000 deaths were officially reported in April/May 2020."}
LitCovid-PD-CHEBI
{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T11","span":{"begin":674,"end":677},"obj":"Chemical"},{"id":"T13","span":{"begin":713,"end":716},"obj":"Chemical"},{"id":"T15","span":{"begin":844,"end":849},"obj":"Chemical"},{"id":"T16","span":{"begin":859,"end":870},"obj":"Chemical"},{"id":"T17","span":{"begin":875,"end":890},"obj":"Chemical"},{"id":"T18","span":{"begin":1056,"end":1071},"obj":"Chemical"},{"id":"T19","span":{"begin":1137,"end":1140},"obj":"Chemical"},{"id":"T21","span":{"begin":1274,"end":1287},"obj":"Chemical"},{"id":"T22","span":{"begin":1289,"end":1291},"obj":"Chemical"},{"id":"T24","span":{"begin":1293,"end":1300},"obj":"Chemical"},{"id":"T25","span":{"begin":1635,"end":1637},"obj":"Chemical"},{"id":"T27","span":{"begin":2084,"end":2088},"obj":"Chemical"}],"attributes":[{"id":"A11","pred":"chebi_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/CHEBI_17824"},{"id":"A12","pred":"chebi_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/CHEBI_30802"},{"id":"A13","pred":"chebi_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/CHEBI_17824"},{"id":"A14","pred":"chebi_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/CHEBI_30802"},{"id":"A15","pred":"chebi_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"id":"A16","pred":"chebi_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/CHEBI_7798"},{"id":"A17","pred":"chebi_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/CHEBI_50858"},{"id":"A18","pred":"chebi_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/CHEBI_50858"},{"id":"A19","pred":"chebi_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/CHEBI_17824"},{"id":"A20","pred":"chebi_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/CHEBI_30802"},{"id":"A21","pred":"chebi_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/CHEBI_27680"},{"id":"A22","pred":"chebi_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/CHEBI_74120"},{"id":"A23","pred":"chebi_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/CHEBI_27680"},{"id":"A24","pred":"chebi_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/CHEBI_59132"},{"id":"A25","pred":"chebi_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/CHEBI_74120"},{"id":"A26","pred":"chebi_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/CHEBI_27680"},{"id":"A27","pred":"chebi_id","subj":"T27","obj":"http://purl.obolibrary.org/obo/CHEBI_29287"},{"id":"A28","pred":"chebi_id","subj":"T27","obj":"http://purl.obolibrary.org/obo/CHEBI_30050"}],"text":"INTRODUCTION\nCOVID-19 is characterized by asymptomatic and/or mild flu-like symptoms; however, about 20% of patients may progress to pneumonia and sepsis, thus requiring intensive support 1 . Patients with acute respiratory distress syndrome due to viral infections, such as SARS-CoV-2, are prone to secondary complications, including aspergillosis 2 . Invasive aspergillosis is not uncommon in immunocompromised patients, and is a well-described complication in acute respiratory failure and severe influenza-related pneumonia 3 . A retrospective multicenter cohort study showed that influenza infection was an independent risk factor for invasive pulmonary aspergillosis (IPA) 4 .\nAlthough influenza-associated IPA is associated with high mortality and morbidity, its pathogenesis is not well known 3 . Direct immunomodulation and the use of drugs, such as oseltamivir and corticosteroids, may play a role 5 , 6 . Wang et al. 2 reported a patient with severe acute respiratory syndrome (SARS), who died of aspergillosis after prolonged treatment with corticosteroids. Blaize et al. 7 and Antinori et al. 8 reported fatal cases of IPA in immunocompetent patients with severe COVID-19, whose bronchoalveolar aspirate grew Aspergillus fumigatus and had a positive serum galactomannan (GM) antigen. Antinori et al. 8 evidenced the pathological pulmonary alterations postmortem and confirmed the infective Aspergillus via molecular techniques. It is possible that aspergillosis could predispose patients with COVID-19 to clinical worsening.\nTherefore, testing for the presence of Aspergillus spp in lower respiratory secretions and GM (not routinely positive in peripheral blood) in patients with COVID-19 in the intensive care unit (ICU) should be considered to allow timely treatment and avoid potential immunosuppression with the use of medications 5 , 6 . However, conducting a bronchoscopy in patients with COVID-19 is relatively contraindicated due to the biological risk and clinical deterioration caused by the procedure 9 . Lung biopsy, which might also be considered a gold standard diagnosis method, is also impractical in such a scenario.\nLatin America seems to be the most recent COVID-19 epicenter, after Asia, Europe, and the US. In Manaus, in the Brazilian Amazon, more than 2,000 deaths were officially reported in April/May 2020."}
LitCovid-PD-GO-BP
{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T1","span":{"begin":249,"end":265},"obj":"http://purl.obolibrary.org/obo/GO_0016032"},{"id":"T2","span":{"begin":770,"end":782},"obj":"http://purl.obolibrary.org/obo/GO_0009405"},{"id":"T3","span":{"begin":1620,"end":1630},"obj":"http://purl.obolibrary.org/obo/GO_0046903"}],"text":"INTRODUCTION\nCOVID-19 is characterized by asymptomatic and/or mild flu-like symptoms; however, about 20% of patients may progress to pneumonia and sepsis, thus requiring intensive support 1 . Patients with acute respiratory distress syndrome due to viral infections, such as SARS-CoV-2, are prone to secondary complications, including aspergillosis 2 . Invasive aspergillosis is not uncommon in immunocompromised patients, and is a well-described complication in acute respiratory failure and severe influenza-related pneumonia 3 . A retrospective multicenter cohort study showed that influenza infection was an independent risk factor for invasive pulmonary aspergillosis (IPA) 4 .\nAlthough influenza-associated IPA is associated with high mortality and morbidity, its pathogenesis is not well known 3 . Direct immunomodulation and the use of drugs, such as oseltamivir and corticosteroids, may play a role 5 , 6 . Wang et al. 2 reported a patient with severe acute respiratory syndrome (SARS), who died of aspergillosis after prolonged treatment with corticosteroids. Blaize et al. 7 and Antinori et al. 8 reported fatal cases of IPA in immunocompetent patients with severe COVID-19, whose bronchoalveolar aspirate grew Aspergillus fumigatus and had a positive serum galactomannan (GM) antigen. Antinori et al. 8 evidenced the pathological pulmonary alterations postmortem and confirmed the infective Aspergillus via molecular techniques. It is possible that aspergillosis could predispose patients with COVID-19 to clinical worsening.\nTherefore, testing for the presence of Aspergillus spp in lower respiratory secretions and GM (not routinely positive in peripheral blood) in patients with COVID-19 in the intensive care unit (ICU) should be considered to allow timely treatment and avoid potential immunosuppression with the use of medications 5 , 6 . However, conducting a bronchoscopy in patients with COVID-19 is relatively contraindicated due to the biological risk and clinical deterioration caused by the procedure 9 . Lung biopsy, which might also be considered a gold standard diagnosis method, is also impractical in such a scenario.\nLatin America seems to be the most recent COVID-19 epicenter, after Asia, Europe, and the US. In Manaus, in the Brazilian Amazon, more than 2,000 deaths were officially reported in April/May 2020."}
LitCovid-PD-GlycoEpitope
{"project":"LitCovid-PD-GlycoEpitope","denotations":[{"id":"T2","span":{"begin":1274,"end":1287},"obj":"GlycoEpitope"},{"id":"T3","span":{"begin":1289,"end":1291},"obj":"GlycoEpitope"},{"id":"T4","span":{"begin":1635,"end":1637},"obj":"GlycoEpitope"}],"attributes":[{"id":"A2","pred":"glyco_epitope_db_id","subj":"T2","obj":"http://www.glycoepitope.jp/epitopes/EP0510"},{"id":"A3","pred":"glyco_epitope_db_id","subj":"T3","obj":"http://www.glycoepitope.jp/epitopes/EP0510"},{"id":"A4","pred":"glyco_epitope_db_id","subj":"T4","obj":"http://www.glycoepitope.jp/epitopes/EP0510"}],"text":"INTRODUCTION\nCOVID-19 is characterized by asymptomatic and/or mild flu-like symptoms; however, about 20% of patients may progress to pneumonia and sepsis, thus requiring intensive support 1 . Patients with acute respiratory distress syndrome due to viral infections, such as SARS-CoV-2, are prone to secondary complications, including aspergillosis 2 . Invasive aspergillosis is not uncommon in immunocompromised patients, and is a well-described complication in acute respiratory failure and severe influenza-related pneumonia 3 . A retrospective multicenter cohort study showed that influenza infection was an independent risk factor for invasive pulmonary aspergillosis (IPA) 4 .\nAlthough influenza-associated IPA is associated with high mortality and morbidity, its pathogenesis is not well known 3 . Direct immunomodulation and the use of drugs, such as oseltamivir and corticosteroids, may play a role 5 , 6 . Wang et al. 2 reported a patient with severe acute respiratory syndrome (SARS), who died of aspergillosis after prolonged treatment with corticosteroids. Blaize et al. 7 and Antinori et al. 8 reported fatal cases of IPA in immunocompetent patients with severe COVID-19, whose bronchoalveolar aspirate grew Aspergillus fumigatus and had a positive serum galactomannan (GM) antigen. Antinori et al. 8 evidenced the pathological pulmonary alterations postmortem and confirmed the infective Aspergillus via molecular techniques. It is possible that aspergillosis could predispose patients with COVID-19 to clinical worsening.\nTherefore, testing for the presence of Aspergillus spp in lower respiratory secretions and GM (not routinely positive in peripheral blood) in patients with COVID-19 in the intensive care unit (ICU) should be considered to allow timely treatment and avoid potential immunosuppression with the use of medications 5 , 6 . However, conducting a bronchoscopy in patients with COVID-19 is relatively contraindicated due to the biological risk and clinical deterioration caused by the procedure 9 . Lung biopsy, which might also be considered a gold standard diagnosis method, is also impractical in such a scenario.\nLatin America seems to be the most recent COVID-19 epicenter, after Asia, Europe, and the US. In Manaus, in the Brazilian Amazon, more than 2,000 deaths were officially reported in April/May 2020."}
LitCovid-sentences
{"project":"LitCovid-sentences","denotations":[{"id":"T10","span":{"begin":0,"end":12},"obj":"Sentence"},{"id":"T11","span":{"begin":13,"end":191},"obj":"Sentence"},{"id":"T12","span":{"begin":192,"end":352},"obj":"Sentence"},{"id":"T13","span":{"begin":353,"end":531},"obj":"Sentence"},{"id":"T14","span":{"begin":532,"end":682},"obj":"Sentence"},{"id":"T15","span":{"begin":683,"end":804},"obj":"Sentence"},{"id":"T16","span":{"begin":805,"end":917},"obj":"Sentence"},{"id":"T17","span":{"begin":918,"end":929},"obj":"Sentence"},{"id":"T18","span":{"begin":930,"end":1072},"obj":"Sentence"},{"id":"T19","span":{"begin":1073,"end":1086},"obj":"Sentence"},{"id":"T20","span":{"begin":1087,"end":1109},"obj":"Sentence"},{"id":"T21","span":{"begin":1110,"end":1301},"obj":"Sentence"},{"id":"T22","span":{"begin":1302,"end":1317},"obj":"Sentence"},{"id":"T23","span":{"begin":1318,"end":1446},"obj":"Sentence"},{"id":"T24","span":{"begin":1447,"end":1543},"obj":"Sentence"},{"id":"T25","span":{"begin":1544,"end":1864},"obj":"Sentence"},{"id":"T26","span":{"begin":1865,"end":2037},"obj":"Sentence"},{"id":"T27","span":{"begin":2038,"end":2155},"obj":"Sentence"},{"id":"T28","span":{"begin":2156,"end":2249},"obj":"Sentence"},{"id":"T29","span":{"begin":2250,"end":2352},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"INTRODUCTION\nCOVID-19 is characterized by asymptomatic and/or mild flu-like symptoms; however, about 20% of patients may progress to pneumonia and sepsis, thus requiring intensive support 1 . Patients with acute respiratory distress syndrome due to viral infections, such as SARS-CoV-2, are prone to secondary complications, including aspergillosis 2 . Invasive aspergillosis is not uncommon in immunocompromised patients, and is a well-described complication in acute respiratory failure and severe influenza-related pneumonia 3 . A retrospective multicenter cohort study showed that influenza infection was an independent risk factor for invasive pulmonary aspergillosis (IPA) 4 .\nAlthough influenza-associated IPA is associated with high mortality and morbidity, its pathogenesis is not well known 3 . Direct immunomodulation and the use of drugs, such as oseltamivir and corticosteroids, may play a role 5 , 6 . Wang et al. 2 reported a patient with severe acute respiratory syndrome (SARS), who died of aspergillosis after prolonged treatment with corticosteroids. Blaize et al. 7 and Antinori et al. 8 reported fatal cases of IPA in immunocompetent patients with severe COVID-19, whose bronchoalveolar aspirate grew Aspergillus fumigatus and had a positive serum galactomannan (GM) antigen. Antinori et al. 8 evidenced the pathological pulmonary alterations postmortem and confirmed the infective Aspergillus via molecular techniques. It is possible that aspergillosis could predispose patients with COVID-19 to clinical worsening.\nTherefore, testing for the presence of Aspergillus spp in lower respiratory secretions and GM (not routinely positive in peripheral blood) in patients with COVID-19 in the intensive care unit (ICU) should be considered to allow timely treatment and avoid potential immunosuppression with the use of medications 5 , 6 . However, conducting a bronchoscopy in patients with COVID-19 is relatively contraindicated due to the biological risk and clinical deterioration caused by the procedure 9 . Lung biopsy, which might also be considered a gold standard diagnosis method, is also impractical in such a scenario.\nLatin America seems to be the most recent COVID-19 epicenter, after Asia, Europe, and the US. In Manaus, in the Brazilian Amazon, more than 2,000 deaths were officially reported in April/May 2020."}
LitCovid-PD-HP
{"project":"LitCovid-PD-HP","denotations":[{"id":"T6","span":{"begin":133,"end":142},"obj":"Phenotype"},{"id":"T7","span":{"begin":147,"end":153},"obj":"Phenotype"},{"id":"T8","span":{"begin":212,"end":232},"obj":"Phenotype"},{"id":"T9","span":{"begin":469,"end":488},"obj":"Phenotype"},{"id":"T10","span":{"begin":518,"end":527},"obj":"Phenotype"},{"id":"T11","span":{"begin":640,"end":672},"obj":"Phenotype"},{"id":"T12","span":{"begin":674,"end":677},"obj":"Phenotype"},{"id":"T13","span":{"begin":713,"end":716},"obj":"Phenotype"},{"id":"T14","span":{"begin":1137,"end":1140},"obj":"Phenotype"}],"attributes":[{"id":"A6","pred":"hp_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A7","pred":"hp_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/HP_0100806"},{"id":"A8","pred":"hp_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/HP_0002098"},{"id":"A9","pred":"hp_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/HP_0002878"},{"id":"A10","pred":"hp_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A11","pred":"hp_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/HP_0020103"},{"id":"A12","pred":"hp_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/HP_0020103"},{"id":"A13","pred":"hp_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/HP_0020103"},{"id":"A14","pred":"hp_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/HP_0020103"}],"text":"INTRODUCTION\nCOVID-19 is characterized by asymptomatic and/or mild flu-like symptoms; however, about 20% of patients may progress to pneumonia and sepsis, thus requiring intensive support 1 . Patients with acute respiratory distress syndrome due to viral infections, such as SARS-CoV-2, are prone to secondary complications, including aspergillosis 2 . Invasive aspergillosis is not uncommon in immunocompromised patients, and is a well-described complication in acute respiratory failure and severe influenza-related pneumonia 3 . A retrospective multicenter cohort study showed that influenza infection was an independent risk factor for invasive pulmonary aspergillosis (IPA) 4 .\nAlthough influenza-associated IPA is associated with high mortality and morbidity, its pathogenesis is not well known 3 . Direct immunomodulation and the use of drugs, such as oseltamivir and corticosteroids, may play a role 5 , 6 . Wang et al. 2 reported a patient with severe acute respiratory syndrome (SARS), who died of aspergillosis after prolonged treatment with corticosteroids. Blaize et al. 7 and Antinori et al. 8 reported fatal cases of IPA in immunocompetent patients with severe COVID-19, whose bronchoalveolar aspirate grew Aspergillus fumigatus and had a positive serum galactomannan (GM) antigen. Antinori et al. 8 evidenced the pathological pulmonary alterations postmortem and confirmed the infective Aspergillus via molecular techniques. It is possible that aspergillosis could predispose patients with COVID-19 to clinical worsening.\nTherefore, testing for the presence of Aspergillus spp in lower respiratory secretions and GM (not routinely positive in peripheral blood) in patients with COVID-19 in the intensive care unit (ICU) should be considered to allow timely treatment and avoid potential immunosuppression with the use of medications 5 , 6 . However, conducting a bronchoscopy in patients with COVID-19 is relatively contraindicated due to the biological risk and clinical deterioration caused by the procedure 9 . Lung biopsy, which might also be considered a gold standard diagnosis method, is also impractical in such a scenario.\nLatin America seems to be the most recent COVID-19 epicenter, after Asia, Europe, and the US. In Manaus, in the Brazilian Amazon, more than 2,000 deaths were officially reported in April/May 2020."}
2_test
{"project":"2_test","denotations":[{"id":"32638890-12890854-134289058","span":{"begin":349,"end":350},"obj":"12890854"},{"id":"32638890-30299367-134289059","span":{"begin":528,"end":529},"obj":"30299367"},{"id":"32638890-30076119-134289060","span":{"begin":679,"end":680},"obj":"30076119"},{"id":"32638890-30299367-134289061","span":{"begin":801,"end":802},"obj":"30299367"},{"id":"32638890-29325970-134289062","span":{"begin":908,"end":909},"obj":"29325970"},{"id":"32638890-12890854-134289063","span":{"begin":930,"end":931},"obj":"12890854"},{"id":"32638890-32470620-134289064","span":{"begin":1110,"end":1111},"obj":"32470620"},{"id":"32638890-32470620-134289065","span":{"begin":1318,"end":1319},"obj":"32470620"},{"id":"32638890-29325970-134289066","span":{"begin":1855,"end":1856},"obj":"29325970"}],"text":"INTRODUCTION\nCOVID-19 is characterized by asymptomatic and/or mild flu-like symptoms; however, about 20% of patients may progress to pneumonia and sepsis, thus requiring intensive support 1 . Patients with acute respiratory distress syndrome due to viral infections, such as SARS-CoV-2, are prone to secondary complications, including aspergillosis 2 . Invasive aspergillosis is not uncommon in immunocompromised patients, and is a well-described complication in acute respiratory failure and severe influenza-related pneumonia 3 . A retrospective multicenter cohort study showed that influenza infection was an independent risk factor for invasive pulmonary aspergillosis (IPA) 4 .\nAlthough influenza-associated IPA is associated with high mortality and morbidity, its pathogenesis is not well known 3 . Direct immunomodulation and the use of drugs, such as oseltamivir and corticosteroids, may play a role 5 , 6 . Wang et al. 2 reported a patient with severe acute respiratory syndrome (SARS), who died of aspergillosis after prolonged treatment with corticosteroids. Blaize et al. 7 and Antinori et al. 8 reported fatal cases of IPA in immunocompetent patients with severe COVID-19, whose bronchoalveolar aspirate grew Aspergillus fumigatus and had a positive serum galactomannan (GM) antigen. Antinori et al. 8 evidenced the pathological pulmonary alterations postmortem and confirmed the infective Aspergillus via molecular techniques. It is possible that aspergillosis could predispose patients with COVID-19 to clinical worsening.\nTherefore, testing for the presence of Aspergillus spp in lower respiratory secretions and GM (not routinely positive in peripheral blood) in patients with COVID-19 in the intensive care unit (ICU) should be considered to allow timely treatment and avoid potential immunosuppression with the use of medications 5 , 6 . However, conducting a bronchoscopy in patients with COVID-19 is relatively contraindicated due to the biological risk and clinical deterioration caused by the procedure 9 . Lung biopsy, which might also be considered a gold standard diagnosis method, is also impractical in such a scenario.\nLatin America seems to be the most recent COVID-19 epicenter, after Asia, Europe, and the US. In Manaus, in the Brazilian Amazon, more than 2,000 deaths were officially reported in April/May 2020."}
LitCovid-PMC-OGER-BB
{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T16","span":{"begin":13,"end":21},"obj":"SP_7"},{"id":"T17","span":{"begin":212,"end":223},"obj":"UBERON:0001004"},{"id":"T18","span":{"begin":249,"end":254},"obj":"NCBITaxon:10239"},{"id":"T19","span":{"begin":275,"end":285},"obj":"SP_7"},{"id":"T20","span":{"begin":469,"end":480},"obj":"UBERON:0001004"},{"id":"T21","span":{"begin":649,"end":658},"obj":"UBERON:0002048"},{"id":"T22","span":{"begin":844,"end":849},"obj":"CHEBI:23888;CHEBI:23888"},{"id":"T23","span":{"begin":859,"end":870},"obj":"CHEBI:7798;CHEBI:7798"},{"id":"T24","span":{"begin":875,"end":890},"obj":"CHEBI:50858;CHEBI:50858"},{"id":"T25","span":{"begin":970,"end":981},"obj":"UBERON:0001004"},{"id":"T26","span":{"begin":992,"end":996},"obj":"SP_10"},{"id":"T27","span":{"begin":1003,"end":1007},"obj":"GO:0016265"},{"id":"T28","span":{"begin":1056,"end":1071},"obj":"CHEBI:50858;CHEBI:50858"},{"id":"T29","span":{"begin":1181,"end":1189},"obj":"SP_7"},{"id":"T30","span":{"begin":1222,"end":1226},"obj":"GO:0040007"},{"id":"T31","span":{"begin":1227,"end":1248},"obj":"NCBITaxon:746128"},{"id":"T32","span":{"begin":1268,"end":1273},"obj":"UBERON:0001977"},{"id":"T33","span":{"begin":1274,"end":1287},"obj":"CHEBI:27680;CHEBI:27680"},{"id":"T34","span":{"begin":1293,"end":1300},"obj":"CHEBI:59132;CHEBI:59132"},{"id":"T35","span":{"begin":1348,"end":1357},"obj":"UBERON:0002048"},{"id":"T36","span":{"begin":1370,"end":1380},"obj":"GO:0016265"},{"id":"T37","span":{"begin":1512,"end":1520},"obj":"SP_7"},{"id":"T38","span":{"begin":1583,"end":1594},"obj":"NCBITaxon:5052"},{"id":"T39","span":{"begin":1608,"end":1619},"obj":"UBERON:0001004"},{"id":"T40","span":{"begin":1676,"end":1681},"obj":"UBERON:0000178"},{"id":"T41","span":{"begin":1700,"end":1708},"obj":"SP_7"},{"id":"T42","span":{"begin":1726,"end":1735},"obj":"UBERON:0007221"},{"id":"T43","span":{"begin":1917,"end":1925},"obj":"SP_7"},{"id":"T44","span":{"begin":2038,"end":2042},"obj":"UBERON:0002048"},{"id":"T45","span":{"begin":2198,"end":2206},"obj":"SP_7"},{"id":"T46","span":{"begin":2302,"end":2308},"obj":"GO:0016265"},{"id":"T10975","span":{"begin":13,"end":21},"obj":"SP_7"},{"id":"T9972","span":{"begin":212,"end":223},"obj":"UBERON:0001004"},{"id":"T44879","span":{"begin":249,"end":254},"obj":"NCBITaxon:10239"},{"id":"T10889","span":{"begin":275,"end":285},"obj":"SP_7"},{"id":"T56159","span":{"begin":469,"end":480},"obj":"UBERON:0001004"},{"id":"T87696","span":{"begin":649,"end":658},"obj":"UBERON:0002048"},{"id":"T74450","span":{"begin":844,"end":849},"obj":"CHEBI:23888;CHEBI:23888"},{"id":"T70529","span":{"begin":859,"end":870},"obj":"CHEBI:7798;CHEBI:7798"},{"id":"T54454","span":{"begin":875,"end":890},"obj":"CHEBI:50858;CHEBI:50858"},{"id":"T90991","span":{"begin":970,"end":981},"obj":"UBERON:0001004"},{"id":"T80841","span":{"begin":992,"end":996},"obj":"SP_10"},{"id":"T15928","span":{"begin":1003,"end":1007},"obj":"GO:0016265"},{"id":"T2908","span":{"begin":1056,"end":1071},"obj":"CHEBI:50858;CHEBI:50858"},{"id":"T17935","span":{"begin":1181,"end":1189},"obj":"SP_7"},{"id":"T49431","span":{"begin":1222,"end":1226},"obj":"GO:0040007"},{"id":"T73074","span":{"begin":1227,"end":1248},"obj":"NCBITaxon:746128"},{"id":"T55704","span":{"begin":1268,"end":1273},"obj":"UBERON:0001977"},{"id":"T61728","span":{"begin":1274,"end":1287},"obj":"CHEBI:27680;CHEBI:27680"},{"id":"T66622","span":{"begin":1293,"end":1300},"obj":"CHEBI:59132;CHEBI:59132"},{"id":"T77392","span":{"begin":1348,"end":1357},"obj":"UBERON:0002048"},{"id":"T64062","span":{"begin":1370,"end":1380},"obj":"GO:0016265"},{"id":"T85604","span":{"begin":1512,"end":1520},"obj":"SP_7"},{"id":"T74035","span":{"begin":1583,"end":1594},"obj":"NCBITaxon:5052"},{"id":"T644","span":{"begin":1608,"end":1619},"obj":"UBERON:0001004"},{"id":"T47982","span":{"begin":1676,"end":1681},"obj":"UBERON:0000178"},{"id":"T97836","span":{"begin":1700,"end":1708},"obj":"SP_7"},{"id":"T31476","span":{"begin":1726,"end":1735},"obj":"UBERON:0007221"},{"id":"T4469","span":{"begin":1917,"end":1925},"obj":"SP_7"},{"id":"T35848","span":{"begin":2038,"end":2042},"obj":"UBERON:0002048"},{"id":"T65233","span":{"begin":2198,"end":2206},"obj":"SP_7"},{"id":"T63671","span":{"begin":2302,"end":2308},"obj":"GO:0016265"}],"text":"INTRODUCTION\nCOVID-19 is characterized by asymptomatic and/or mild flu-like symptoms; however, about 20% of patients may progress to pneumonia and sepsis, thus requiring intensive support 1 . Patients with acute respiratory distress syndrome due to viral infections, such as SARS-CoV-2, are prone to secondary complications, including aspergillosis 2 . Invasive aspergillosis is not uncommon in immunocompromised patients, and is a well-described complication in acute respiratory failure and severe influenza-related pneumonia 3 . A retrospective multicenter cohort study showed that influenza infection was an independent risk factor for invasive pulmonary aspergillosis (IPA) 4 .\nAlthough influenza-associated IPA is associated with high mortality and morbidity, its pathogenesis is not well known 3 . Direct immunomodulation and the use of drugs, such as oseltamivir and corticosteroids, may play a role 5 , 6 . Wang et al. 2 reported a patient with severe acute respiratory syndrome (SARS), who died of aspergillosis after prolonged treatment with corticosteroids. Blaize et al. 7 and Antinori et al. 8 reported fatal cases of IPA in immunocompetent patients with severe COVID-19, whose bronchoalveolar aspirate grew Aspergillus fumigatus and had a positive serum galactomannan (GM) antigen. Antinori et al. 8 evidenced the pathological pulmonary alterations postmortem and confirmed the infective Aspergillus via molecular techniques. It is possible that aspergillosis could predispose patients with COVID-19 to clinical worsening.\nTherefore, testing for the presence of Aspergillus spp in lower respiratory secretions and GM (not routinely positive in peripheral blood) in patients with COVID-19 in the intensive care unit (ICU) should be considered to allow timely treatment and avoid potential immunosuppression with the use of medications 5 , 6 . However, conducting a bronchoscopy in patients with COVID-19 is relatively contraindicated due to the biological risk and clinical deterioration caused by the procedure 9 . Lung biopsy, which might also be considered a gold standard diagnosis method, is also impractical in such a scenario.\nLatin America seems to be the most recent COVID-19 epicenter, after Asia, Europe, and the US. In Manaus, in the Brazilian Amazon, more than 2,000 deaths were officially reported in April/May 2020."}