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PMC:7341831 / 705-11327 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T3 1268-1273 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T4 1676-1681 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T5 2038-2042 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T6 2468-2474 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T7 2914-2925 Body_part denotes extremities http://purl.org/sig/ont/fma/fma7182
T8 2957-2971 Body_part denotes norepinephrine http://purl.org/sig/ont/fma/fma61799
T9 3606-3613 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T10 3721-3731 Body_part denotes Leukocytes http://purl.org/sig/ont/fma/fma62852
T11 3742-3751 Body_part denotes platelets http://purl.org/sig/ont/fma/fma62851
T12 3764-3774 Body_part denotes hemoglobin http://purl.org/sig/ont/fma/fma62293
T13 3868-3873 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T14 3932-3948 Body_part denotes right lower lobe http://purl.org/sig/ont/fma/fma7337
T15 3976-3981 Body_part denotes Blood http://purl.org/sig/ont/fma/fma9670
T16 4619-4623 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T17 4667-4683 Body_part denotes right lower lobe http://purl.org/sig/ont/fma/fma7337
T18 4718-4722 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T19 4853-4857 Body_part denotes head http://purl.org/sig/ont/fma/fma7154
T20 4952-4958 Body_part denotes artery http://purl.org/sig/ont/fma/fma50720
T21 5018-5023 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T22 5167-5173 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T23 5275-5279 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T24 5448-5452 Body_part denotes head http://purl.org/sig/ont/fma/fma7154
T25 5815-5826 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T26 5883-5889 Body_part denotes artery http://purl.org/sig/ont/fma/fma50720
T27 5928-5953 Body_part denotes alveolar epithelial cells http://purl.org/sig/ont/fma/fma62499
T28 5948-5953 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T29 6033-6043 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T30 6127-6136 Body_part denotes ribosomal http://purl.org/sig/ont/fma/fma66867
T31 6137-6140 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T32 7035-7041 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T33 7334-7338 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T34 7421-7435 Body_part denotes bronchial wall http://purl.org/sig/ont/fma/fma13121|http://purl.org/sig/ont/fma/fma67480
T36 7521-7536 Body_part denotes lung parenchyma http://purl.org/sig/ont/fma/fma27360
T37 7566-7570 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T38 7591-7599 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T39 7710-7723 Body_part denotes blood vessels http://purl.org/sig/ont/fma/fma63183
T40 7710-7715 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T41 7996-8001 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T42 9585-9607 Body_part denotes central nervous system http://purl.org/sig/ont/fma/fma55675
T43 10086-10090 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 1268-1273 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T3 1676-1681 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T4 2038-2042 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T5 2468-2474 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T6 3070-3074 Body_part denotes tube http://purl.obolibrary.org/obo/UBERON_0000025
T7 3331-3335 Body_part denotes tube http://purl.obolibrary.org/obo/UBERON_0000025
T8 3868-3873 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T9 3944-3948 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T10 3976-3981 Body_part denotes Blood http://purl.obolibrary.org/obo/UBERON_0000178
T11 4619-4623 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T12 4679-4683 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T13 4718-4722 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T14 4853-4857 Body_part denotes head http://purl.obolibrary.org/obo/UBERON_0000033
T15 4952-4958 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T16 5018-5023 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T17 5167-5173 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T18 5275-5279 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T19 5448-5452 Body_part denotes head http://purl.obolibrary.org/obo/UBERON_0000033
T20 5883-5889 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T21 7035-7041 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T22 7334-7338 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T23 7521-7536 Body_part denotes lung parenchyma http://purl.obolibrary.org/obo/UBERON_0008946
T24 7521-7525 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T25 7526-7536 Body_part denotes parenchyma http://purl.obolibrary.org/obo/UBERON_0000353
T26 7566-7570 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T27 7710-7723 Body_part denotes blood vessels http://purl.obolibrary.org/obo/UBERON_0001981
T28 7710-7715 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T29 7716-7723 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T30 7996-8001 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T31 8137-8144 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T32 9585-9607 Body_part denotes central nervous system http://purl.obolibrary.org/obo/UBERON_0001017
T33 9593-9607 Body_part denotes nervous system http://purl.obolibrary.org/obo/UBERON_0001016
T34 10086-10090 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
37 108-116 Species denotes patients Tax:9606
38 192-200 Species denotes Patients Tax:9606
39 275-285 Species denotes SARS-CoV-2 Tax:2697049
40 413-421 Species denotes patients Tax:9606
41 13-21 Disease denotes COVID-19 MESH:C000657245
42 133-142 Disease denotes pneumonia MESH:D011014
43 147-153 Disease denotes sepsis MESH:D018805
44 206-241 Disease denotes acute respiratory distress syndrome MESH:D012128
45 249-265 Disease denotes viral infections MESH:D001102
46 335-348 Disease denotes aspergillosis MESH:D001228
47 353-375 Disease denotes Invasive aspergillosis MESH:D055744
48 469-488 Disease denotes respiratory failure MESH:D012131
49 518-527 Disease denotes pneumonia MESH:D011014
50 595-604 Disease denotes infection MESH:D007239
51 640-672 Disease denotes invasive pulmonary aspergillosis MESH:D055744
67 944-951 Species denotes patient Tax:9606
68 1160-1168 Species denotes patients Tax:9606
69 1227-1248 Species denotes Aspergillus fumigatus Tax:746128
70 1498-1506 Species denotes patients Tax:9606
71 1409-1420 Species denotes Aspergillus Tax:746128
72 859-870 Chemical denotes oseltamivir MESH:D053139
73 1274-1287 Chemical denotes galactomannan MESH:C012990
74 1289-1291 Chemical denotes GM MESH:C012990
75 741-750 Disease denotes mortality MESH:D003643
76 957-990 Disease denotes severe acute respiratory syndrome MESH:D045169
77 992-996 Disease denotes SARS MESH:D045169
78 1011-1024 Disease denotes aspergillosis MESH:D001228
79 1181-1189 Disease denotes COVID-19 MESH:C000657245
80 1467-1480 Disease denotes aspergillosis MESH:D001228
81 1512-1520 Disease denotes COVID-19 MESH:C000657245
88 1686-1694 Species denotes patients Tax:9606
89 1903-1911 Species denotes patients Tax:9606
90 1583-1594 Species denotes Aspergillus Tax:746128
91 1635-1637 Chemical denotes GM MESH:C012990
92 1700-1708 Disease denotes COVID-19 MESH:C000657245
93 1917-1925 Disease denotes COVID-19 MESH:C000657245
96 2198-2206 Disease denotes COVID-19 MESH:C000657245
97 2302-2308 Disease denotes deaths MESH:D003643
115 2385-2392 Species denotes patient Tax:9606
116 2595-2603 Species denotes patients Tax:9606
117 2633-2640 Species denotes patient Tax:9606
118 3216-3223 Species denotes patient Tax:9606
119 2957-2971 Chemical denotes norepinephrine MESH:D009638
120 3233-3244 Chemical denotes oseltamivir MESH:D053139
121 3269-3280 Chemical denotes chloroquine MESH:D002738
122 3340-3352 Chemical denotes azithromycin MESH:D017963
123 3370-3381 Chemical denotes ceftriaxone MESH:D002443
124 3395-3405 Chemical denotes furosemide MESH:D005665
125 3448-3458 Chemical denotes enoxaparin MESH:D017984
126 2415-2427 Disease denotes hypertension MESH:D006973
127 2429-2454 Disease denotes type II diabetes mellitus MESH:D003924
128 2460-2482 Disease denotes chronic kidney disease MESH:D051436
129 2609-2617 Disease denotes COVID-19 MESH:C000657245
130 2721-2729 Disease denotes COVID-19 MESH:C000657245
131 2896-2925 Disease denotes cyanosis and cold extremities MESH:D003490
139 3595-3613 Gene denotes C-reactive protein Gene:1401
140 3546-3550 Chemical denotes urea MESH:D014508
141 3566-3576 Chemical denotes creatinine MESH:D003404
142 3653-3662 Chemical denotes potassium MESH:D011188
143 3667-3673 Chemical denotes sodium MESH:D012964
144 3804-3816 Disease denotes neutrophilia MESH:C563010
145 3828-3839 Disease denotes lymphopenia MESH:D008231
151 4064-4071 Species denotes patient Tax:9606
152 4304-4311 Species denotes patient Tax:9606
153 4150-4161 Disease denotes hypotension MESH:D007022
154 4166-4177 Disease denotes bradycardia MESH:D001919
155 4334-4339 Disease denotes death MESH:D003643
162 4762-4773 Species denotes Aspergillus Tax:746128
163 4841-4852 Species denotes Aspergillus Tax:746128
164 5048-5050 Chemical denotes GM MESH:C012990
165 4906-4922 Disease denotes bronchopneumonia MESH:D001996
166 4964-4983 Disease denotes squamous metaplasia MESH:D008679
167 5119-5132 Disease denotes aspergillosis MESH:D001228
172 5436-5447 Species denotes Aspergillus Tax:746128
173 5327-5330 Chemical denotes H&E MESH:D006371
174 5775-5791 Disease denotes Bronchopneumonia MESH:D001996
175 5905-5924 Disease denotes Squamous metaplasia MESH:D008679
178 6587-6613 Species denotes Aspergillus penicillioides Tax:41959
179 6000-6011 Species denotes Aspergillus Tax:746128
196 6769-6777 Species denotes patients Tax:9606
197 6916-6923 Species denotes patient Tax:9606
198 7356-7363 Species denotes patient Tax:9606
199 7906-7914 Species denotes patients Tax:9606
200 7804-7806 Chemical denotes GM MESH:C012990
201 6801-6809 Disease denotes COVID-19 MESH:C000657245
202 6997-7022 Disease denotes Type II diabetes mellitus MESH:D003924
203 7027-7049 Disease denotes chronic kidney disease MESH:D051436
204 7377-7385 Disease denotes COVID-19 MESH:C000657245
205 7481-7502 Disease denotes necrotizing pneumonia MESH:D011014
206 7566-7577 Disease denotes lung injury MESH:D055370
207 7591-7606 Disease denotes alveolar damage MESH:D055370
208 7639-7655 Disease denotes bronchopneumonia MESH:D001996
209 7729-7761 Disease denotes hallmark of the invasive disease MESH:D009361
210 7897-7905 Disease denotes COVID-19 MESH:C000657245
211 8070-8086 Disease denotes invasive disease MESH:D009361
227 8335-8348 Gene denotes neuraminidase Gene:4758
228 8366-8373 Species denotes patient Tax:9606
229 8748-8755 Species denotes patient Tax:9606
230 8976-8984 Species denotes patients Tax:9606
231 8237-8248 Chemical denotes oseltamivir MESH:D053139
232 8595-8606 Chemical denotes oseltamivir MESH:D053139
233 8649-8660 Chemical denotes chloroquine MESH:D002738
234 8297-8306 Disease denotes infection MESH:D007239
235 8471-8479 Disease denotes COVID-19 MESH:C000657245
236 8511-8527 Disease denotes invasive disease MESH:D009361
237 8616-8636 Disease denotes SARS-CoV-2 infection MESH:C000657245
238 8895-8911 Disease denotes fungal infection MESH:D009181
239 8945-8958 Disease denotes aspergillosis MESH:D001228
240 8990-8998 Disease denotes COVID-19 MESH:C000657245
241 9108-9118 Disease denotes infections MESH:D007239
255 9120-9137 Species denotes A. penicillioides Tax:41959
256 9229-9234 Species denotes human Tax:9606
257 9444-9461 Species denotes A. penicillioides Tax:41959
258 9553-9558 Species denotes child Tax:9606
259 9261-9267 Chemical denotes oxygen MESH:D010100
260 9175-9187 Disease denotes dry habitats MESH:D015352
261 9337-9346 Disease denotes infection MESH:D007239
262 9471-9480 Disease denotes infection MESH:D007239
263 9516-9525 Disease denotes keratitis MESH:D007634
264 9527-9547 Disease denotes disseminated disease MESH:D009103
265 9564-9579 Disease denotes cystic fibrosis MESH:D003550
266 9585-9617 Disease denotes central nervous system arteritis MESH:D020943
267 9731-9747 Disease denotes invasive disease MESH:D009361
274 9793-9800 Species denotes patient Tax:9606
275 10103-10105 Chemical denotes GM MESH:C012990
276 9813-9822 Disease denotes pneumonia MESH:D011014
277 9839-9847 Disease denotes COVID-19 MESH:C000657245
278 10265-10273 Disease denotes COVID-19 MESH:C000657245
279 10395-10416 Disease denotes SARS-CoV-2 infections MESH:C000657245

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T10 13-21 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T11 67-70 Disease denotes flu http://purl.obolibrary.org/obo/MONDO_0005812
T12 133-142 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T13 206-241 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T14 212-241 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T15 249-265 Disease denotes viral infections http://purl.obolibrary.org/obo/MONDO_0005108
T16 275-283 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T17 275-279 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T18 335-348 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T19 353-375 Disease denotes Invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T20 362-375 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T21 463-488 Disease denotes acute respiratory failure http://purl.obolibrary.org/obo/MONDO_0001208|http://purl.obolibrary.org/obo/MONDO_0021113
T23 500-509 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T24 518-527 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T25 585-604 Disease denotes influenza infection http://purl.obolibrary.org/obo/MONDO_0005812
T26 595-604 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T27 659-672 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T28 692-701 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T29 957-990 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T30 992-996 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T31 1011-1024 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T32 1181-1189 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T33 1467-1480 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T34 1512-1520 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T35 1700-1708 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T36 1917-1925 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T37 2198-2206 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T38 2415-2427 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T39 2429-2454 Disease denotes type II diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005148
T40 2437-2445 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T41 2460-2482 Disease denotes chronic kidney disease http://purl.obolibrary.org/obo/MONDO_0005300
T42 2468-2482 Disease denotes kidney disease http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240
T44 2609-2617 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T45 2686-2688 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T46 2721-2729 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T47 2771-2773 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T48 3828-3839 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T49 4150-4161 Disease denotes hypotension http://purl.obolibrary.org/obo/MONDO_0005468
T50 4906-4922 Disease denotes bronchopneumonia http://purl.obolibrary.org/obo/MONDO_0005682
T51 5119-5132 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T52 5536-5539 Disease denotes PAS http://purl.obolibrary.org/obo/MONDO_0004277
T53 5775-5791 Disease denotes Bronchopneumonia http://purl.obolibrary.org/obo/MONDO_0005682
T54 6801-6809 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T55 6997-7022 Disease denotes Type II diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005148
T56 7005-7022 Disease denotes diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005015
T57 7027-7049 Disease denotes chronic kidney disease http://purl.obolibrary.org/obo/MONDO_0005300
T58 7035-7049 Disease denotes kidney disease http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240
T60 7377-7385 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T61 7436-7446 Disease denotes ulceration http://purl.obolibrary.org/obo/MONDO_0043839
T62 7493-7502 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T63 7560-7577 Disease denotes acute lung injury http://purl.obolibrary.org/obo/MONDO_0006502|http://purl.obolibrary.org/obo/MONDO_0015796
T65 7571-7577 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T66 7639-7655 Disease denotes bronchopneumonia http://purl.obolibrary.org/obo/MONDO_0005682
T67 7897-7905 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T68 8287-8306 Disease denotes influenza infection http://purl.obolibrary.org/obo/MONDO_0005812
T69 8297-8306 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T70 8471-8479 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T71 8616-8624 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T72 8616-8620 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T73 8627-8636 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T74 8814-8816 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T75 8895-8911 Disease denotes fungal infection http://purl.obolibrary.org/obo/MONDO_0002041
T76 8902-8911 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T77 8945-8958 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T78 8990-8998 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T79 9108-9118 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T80 9337-9346 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T81 9462-9480 Disease denotes clinical infection http://purl.obolibrary.org/obo/MONDO_0005550
T82 9516-9525 Disease denotes keratitis http://purl.obolibrary.org/obo/MONDO_0003085
T83 9564-9579 Disease denotes cystic fibrosis http://purl.obolibrary.org/obo/MONDO_0009061
T84 9608-9617 Disease denotes arteritis http://purl.obolibrary.org/obo/MONDO_0043494
T85 9813-9822 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T86 9839-9847 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T87 10265-10273 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T88 10395-10403 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T89 10395-10399 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T90 10406-10416 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T5 430-431 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 532-533 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T7 901-902 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 942-943 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1257-1258 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 1555-1562 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T11 1676-1681 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T12 1676-1681 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T13 1885-1886 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 2038-2042 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T15 2038-2042 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T16 2082-2083 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 2144-2145 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 2366-2367 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T19 2368-2370 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T20 2380-2384 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T21 2380-2384 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T22 2468-2474 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T23 2468-2474 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T24 2468-2474 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T25 2558-2559 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 2914-2925 http://www.ebi.ac.uk/efo/EFO_0000876 denotes extremities
T27 3070-3074 http://purl.obolibrary.org/obo/UBERON_0000025 denotes tube
T28 3317-3318 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 3331-3335 http://purl.obolibrary.org/obo/UBERON_0000025 denotes tube
T30 3868-3873 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T31 3976-3981 http://purl.obolibrary.org/obo/UBERON_0000178 denotes Blood
T32 3976-3981 http://www.ebi.ac.uk/efo/EFO_0000296 denotes Blood
T33 4619-4623 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T34 4619-4623 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T35 4718-4722 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T36 4718-4722 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T37 4826-4827 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 4853-4857 http://purl.obolibrary.org/obo/UBERON_0000033 denotes head
T39 4853-4857 http://www.ebi.ac.uk/efo/EFO_0000964 denotes head
T40 4952-4958 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
T41 4952-4958 http://www.ebi.ac.uk/efo/EFO_0000814 denotes artery
T42 5018-5023 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T43 5018-5023 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T44 5024-5030 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T45 5275-5279 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T46 5275-5279 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T47 5281-5282 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T48 5420-5421 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T49 5448-5452 http://purl.obolibrary.org/obo/UBERON_0000033 denotes head
T50 5448-5452 http://www.ebi.ac.uk/efo/EFO_0000964 denotes head
T51 5868-5869 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 5883-5889 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
T53 5883-5889 http://www.ebi.ac.uk/efo/EFO_0000814 denotes artery
T54 5937-5947 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T55 5948-5953 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T56 7035-7041 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T57 7035-7041 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T58 7035-7041 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T59 7334-7338 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T60 7334-7338 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T61 7354-7355 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 7521-7525 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T63 7521-7525 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T64 7547-7548 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 7566-7570 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T66 7566-7570 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T67 7710-7723 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T68 7710-7723 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessels
T69 7836-7837 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T70 7996-8001 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T71 7996-8001 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T72 8003-8004 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T73 8005-8009 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T74 8049-8050 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T75 8137-8144 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels
T76 8449-8450 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T77 8661-8664 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T78 8682-8683 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T79 8736-8738 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T80 8875-8876 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T81 9120-9121 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T82 9141-9142 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T83 9229-9234 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T84 9239-9245 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T85 9444-9445 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T86 9551-9552 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T87 9585-9607 http://purl.obolibrary.org/obo/UBERON_0001017 denotes central nervous system
T88 9585-9607 http://www.ebi.ac.uk/efo/EFO_0000302 denotes central nervous system
T89 9585-9607 http://www.ebi.ac.uk/efo/EFO_0000908 denotes central nervous system
T90 9774-9775 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T91 9791-9792 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T92 9855-9856 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T93 10086-10090 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T94 10086-10090 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T95 10186-10187 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T96 10228-10229 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T97 10552-10553 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T11 674-677 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T13 713-716 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T15 844-849 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T16 859-870 Chemical denotes oseltamivir http://purl.obolibrary.org/obo/CHEBI_7798
T17 875-890 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T18 1056-1071 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T19 1137-1140 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T21 1274-1287 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T22 1289-1291 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T24 1293-1300 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T25 1635-1637 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T27 2084-2088 Chemical denotes gold http://purl.obolibrary.org/obo/CHEBI_29287|http://purl.obolibrary.org/obo/CHEBI_30050
T29 2380-2384 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T30 2434-2436 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T31 2845-2850 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T32 2957-2971 Chemical denotes norepinephrine http://purl.obolibrary.org/obo/CHEBI_18357|http://purl.obolibrary.org/obo/CHEBI_33569
T34 3131-3135 Chemical denotes PEEP http://purl.obolibrary.org/obo/CHEBI_53359|http://purl.obolibrary.org/obo/CHEBI_60683
T36 3233-3244 Chemical denotes oseltamivir http://purl.obolibrary.org/obo/CHEBI_7798
T37 3269-3280 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T38 3337-3339 Chemical denotes IV http://purl.obolibrary.org/obo/CHEBI_74327
T39 3340-3352 Chemical denotes azithromycin http://purl.obolibrary.org/obo/CHEBI_2955
T40 3367-3369 Chemical denotes IV http://purl.obolibrary.org/obo/CHEBI_74327
T41 3370-3381 Chemical denotes ceftriaxone http://purl.obolibrary.org/obo/CHEBI_29007
T42 3392-3394 Chemical denotes IV http://purl.obolibrary.org/obo/CHEBI_74327
T43 3395-3405 Chemical denotes furosemide http://purl.obolibrary.org/obo/CHEBI_47426
T44 3475-3489 Chemical denotes corticosteroid http://purl.obolibrary.org/obo/CHEBI_50858
T45 3490-3495 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T46 3546-3550 Chemical denotes urea http://purl.obolibrary.org/obo/CHEBI_16199
T47 3566-3576 Chemical denotes creatinine http://purl.obolibrary.org/obo/CHEBI_16737
T48 3606-3613 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T49 3653-3662 Chemical denotes potassium http://purl.obolibrary.org/obo/CHEBI_26216
T50 3667-3673 Chemical denotes sodium http://purl.obolibrary.org/obo/CHEBI_26708
T51 3764-3774 Chemical denotes hemoglobin http://purl.obolibrary.org/obo/CHEBI_35143
T52 5048-5050 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T54 5051-5058 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T55 5214-5230 Chemical denotes antifungal drugs http://purl.obolibrary.org/obo/CHEBI_35718|http://purl.obolibrary.org/obo/CHEBI_86327
T57 5225-5230 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T58 5536-5539 Chemical denotes PAS http://purl.obolibrary.org/obo/CHEBI_27565
T59 5843-5849 Chemical denotes Fibrin http://purl.obolibrary.org/obo/CHEBI_5054
T60 6033-6043 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T61 6137-6140 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T62 6762-6765 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T64 6860-6863 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T66 7002-7004 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T67 7154-7164 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T68 7369-7372 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T70 7396-7399 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T72 7804-7806 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T74 7974-7981 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T75 8237-8248 Chemical denotes oseltamivir http://purl.obolibrary.org/obo/CHEBI_7798
T76 8392-8395 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T78 8417-8432 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T79 8575-8590 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T80 8595-8606 Chemical denotes oseltamivir http://purl.obolibrary.org/obo/CHEBI_7798
T81 8649-8660 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T82 8684-8688 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T83 8694-8704 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T84 9261-9267 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T85 9672-9682 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T86 9784-9787 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T88 9857-9861 Chemical denotes gold http://purl.obolibrary.org/obo/CHEBI_29287|http://purl.obolibrary.org/obo/CHEBI_30050
T90 9932-9935 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T92 10103-10105 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T94 10381-10384 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T96 10502-10505 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 249-265 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infections
T2 770-782 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T3 1620-1630 http://purl.obolibrary.org/obo/GO_0046903 denotes secretions
T4 4017-4023 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T5 4973-4983 http://purl.obolibrary.org/obo/GO_0036074 denotes metaplasia
T6 5712-5722 http://purl.obolibrary.org/obo/GO_0000917 denotes septations
T7 5914-5924 http://purl.obolibrary.org/obo/GO_0036074 denotes metaplasia
T8 8709-8724 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T2 1274-1287 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T3 1289-1291 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T4 1635-1637 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T5 5048-5050 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T6 7804-7806 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T7 10103-10105 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T10 0-12 Sentence denotes INTRODUCTION
T11 13-191 Sentence denotes COVID-19 is characterized by asymptomatic and/or mild flu-like symptoms; however, about 20% of patients may progress to pneumonia and sepsis, thus requiring intensive support 1 .
T12 192-352 Sentence denotes Patients with acute respiratory distress syndrome due to viral infections, such as SARS-CoV-2, are prone to secondary complications, including aspergillosis 2 .
T13 353-531 Sentence denotes Invasive aspergillosis is not uncommon in immunocompromised patients, and is a well-described complication in acute respiratory failure and severe influenza-related pneumonia 3 .
T14 532-682 Sentence denotes A retrospective multicenter cohort study showed that influenza infection was an independent risk factor for invasive pulmonary aspergillosis (IPA) 4 .
T15 683-804 Sentence denotes Although influenza-associated IPA is associated with high mortality and morbidity, its pathogenesis is not well known 3 .
T16 805-917 Sentence denotes Direct immunomodulation and the use of drugs, such as oseltamivir and corticosteroids, may play a role 5 , 6 .
T17 918-929 Sentence denotes Wang et al.
T18 930-1072 Sentence denotes 2 reported a patient with severe acute respiratory syndrome (SARS), who died of aspergillosis after prolonged treatment with corticosteroids.
T19 1073-1086 Sentence denotes Blaize et al.
T20 1087-1109 Sentence denotes 7 and Antinori et al.
T21 1110-1301 Sentence denotes 8 reported fatal cases of IPA in immunocompetent patients with severe COVID-19, whose bronchoalveolar aspirate grew Aspergillus fumigatus and had a positive serum galactomannan (GM) antigen.
T22 1302-1317 Sentence denotes Antinori et al.
T23 1318-1446 Sentence denotes 8 evidenced the pathological pulmonary alterations postmortem and confirmed the infective Aspergillus via molecular techniques.
T24 1447-1543 Sentence denotes It is possible that aspergillosis could predispose patients with COVID-19 to clinical worsening.
T25 1544-1864 Sentence denotes Therefore, testing for the presence of Aspergillus spp in lower respiratory secretions and GM (not routinely positive in peripheral blood) in patients with COVID-19 in the intensive care unit (ICU) should be considered to allow timely treatment and avoid potential immunosuppression with the use of medications 5 , 6 .
T26 1865-2037 Sentence denotes However, conducting a bronchoscopy in patients with COVID-19 is relatively contraindicated due to the biological risk and clinical deterioration caused by the procedure 9 .
T27 2038-2155 Sentence denotes Lung biopsy, which might also be considered a gold standard diagnosis method, is also impractical in such a scenario.
T28 2156-2249 Sentence denotes Latin America seems to be the most recent COVID-19 epicenter, after Asia, Europe, and the US.
T29 2250-2352 Sentence denotes In Manaus, in the Brazilian Amazon, more than 2,000 deaths were officially reported in April/May 2020.
T30 2354-2365 Sentence denotes CASE REPORT
T31 2366-2628 Sentence denotes A 71-year-old male patient with prior history of hypertension, type II diabetes mellitus, and chronic kidney disease was admitted to the Hospital e Pronto-Socorro Delphina Rinaldi Abdel Aziz, a referral unit for the treatment of patients with COVID-19 in Manaus.
T32 2629-2741 Sentence denotes The patient was transferred from another hospital, where he had already been diagnosed with COVID-19 by RT-qPCR.
T33 2742-2926 Sentence denotes Upon admission into the ICU, he was placed under orotracheal intubation, received high-dose vasoactive drugs, was hemodynamically unstable, and presented cyanosis and cold extremities.
T34 2927-3181 Sentence denotes He was administered high-flow norepinephrine (1.41 µg/kg/min) and placed on invasive mechanical ventilation under aspiration of an orotracheal tube with high parameters (positive end-expiratory pressure [PEEP] 8/FiO2 60%/respiratory rate 26; volume 360).
T35 3182-3211 Sentence denotes The PaO2/FiO2 ratio was 86.6.
T36 3212-3471 Sentence denotes The patient received oseltamivir (75 mg twice daily) and chloroquine (450 mg twice on the first day) via a nasoenteral tube, IV azithromycin (500 mg/day), IV ceftriaxone (2g/day), IV furosemide (20mg TID), and prophylactic subcutaneous enoxaparin (40 mg/day).
T37 3472-3506 Sentence denotes No corticosteroid drugs were used.
T38 3507-3624 Sentence denotes Laboratory parameters showed increased urea (360.7 mg/dL), creatinine (8.46 mg/dL), and C-reactive protein (12 mg/L).
T39 3625-3720 Sentence denotes Normal values were seen for potassium and sodium (5.24 mmol/L; and 136.8 mmol/L, respectively).
T40 3721-3867 Sentence denotes Leukocytes 6,530/µL, platelets 285x109/µL, hemoglobin 11.2 g/dL, hematocrit 34.5%, neutrophilia (84%), and lymphopenia (12,8%) were also observed.
T41 3868-3949 Sentence denotes Chest x-rays showed infiltrate and nodular consolidation in the right lower lobe.
T42 3950-3975 Sentence denotes No CT scan was performed.
T43 3976-4024 Sentence denotes Blood culture was negative for bacterial growth.
T44 4025-4178 Sentence denotes On day three, following admission, the patient progressed with hemodynamic worsening and refractory shock, with irreversible hypotension and bradycardia.
T45 4179-4205 Sentence denotes He died the following day.
T46 4206-4494 Sentence denotes The autopsy was authorized by legal representatives (an informed consent form was signed), as the patient was enrolled prior to death in the CloroCovid-19 Study (ClinicalTrials.gov Identifier: NCT04323527, approved by the Brazilian National Ethics Review Board CAAE 30152620.1.0000.0005).
T47 4495-4597 Sentence denotes An autopsy was performed in the same hospital by trained technicians and under strict biosafety rules.
T48 4598-4684 Sentence denotes Macroscopically, the lung showed focal areas of consolidation in the right lower lobe.
T49 4685-4995 Sentence denotes Microscopic visualization of the lung showed the presence of clearly defined Aspergillus structures, including hyphae and fungal spores, and a well-defined Aspergillus head with phialides, conidia, and spores, as well as bronchopneumonia, fibrin thrombi occluding an artery, and squamous metaplasia (Figure 1).
T50 4996-5073 Sentence denotes The stored peripheral blood tested positive for the GM antigen (index 4.290).
T51 5074-5241 Sentence denotes Since the diagnosis was made postmortem, and aspergillosis was not considered antemortem, no sputum was collected for fungus culture and no antifungal drugs were used.
T52 5242-5251 Sentence denotes FIGURE 1:
T53 5253-5280 Sentence denotes Histopathology of the lung.
T54 5281-5283 Sentence denotes A.
T55 5284-5340 Sentence denotes Numerous hyphae and fungal spores shown by H&E staining.
T56 5341-5419 Sentence denotes Microscopic cavitation surrounded by numerous hypahes and fungal spores (40x).
T57 5420-5422 Sentence denotes B.
T58 5423-5547 Sentence denotes Well-defined Aspergillus head, allowing the visualization of phialides and conidia, with numerous fungal spores (PAS, 400x).
T59 5548-5550 Sentence denotes C.
T60 5551-5771 Sentence denotes Well-defined aspergillary structure showing conidiophore, aspergillary vesicle, phialides, and conidia, as well as several hyphae of regular diameter, some with septations and dichotomous branches (Gomori-Grocott, 400x).
T61 5772-5774 Sentence denotes D.
T62 5775-5839 Sentence denotes Bronchopneumonia with alveoli filled by neutrophils (H&E, 400x).
T63 5840-5842 Sentence denotes E.
T64 5843-5904 Sentence denotes Fibrin thrombi occluding a medium-sized artery (H&E, 400x) F.
T65 5905-5966 Sentence denotes Squamous metaplasia in alveolar epithelial cells (H&E, 400x).
T66 5967-6055 Sentence denotes The histopathological finding of Aspergillus spp was confirmed by nucleotide sequencing.
T67 6056-6248 Sentence denotes The internal transcribed spacer 1 (ITS1) and ITS2 regions and the 5.8S ribosomal DNA (rDNA) were amplified by polymerase chain reaction using the universal primers ITS1 and ITS4, as described.
T68 6249-6395 Sentence denotes 10 Sequencing was performed using the BigDye® Terminator v3.1 Cycle Sequencing (Applied Biosystems) and the above primers on an individual basis.
T69 6396-6560 Sentence denotes Only the best sequences were used to perform contig assembly and conduct comparative analysis with the GenBank database using the Basic Local Alignment Search Tool.
T70 6561-6614 Sentence denotes The best hit returns were Aspergillus penicillioides.
T71 6615-6696 Sentence denotes The sequence was submitted to GenBank and received the accession number MT582426.
T72 6698-6708 Sentence denotes DISCUSSION
T73 6709-6897 Sentence denotes Our report illustrates the importance of considering IPA in patients with underlying severe COVID-19, who show no clear clinical impairment related to IPA throughout their hospitalization.
T74 6898-7051 Sentence denotes In this case, the patient was likely immunologically compromised due to his underlying conditions (Type II diabetes mellitus and chronic kidney disease).
T75 7052-7290 Sentence denotes This case underscores the need to investigate this neglected disease and allow for early tracing with antifungal treatment; however, it is necessary to consider the risks posed by the bronchoscopy that must be performed for the diagnosis.
T76 7291-7306 Sentence denotes Antinori et al.
T77 7307-7607 Sentence denotes 8 assessed the postmortem lung examination of a patient with IPA and COVID-19, in which IPA was characterized by bronchial wall ulceration associated with multiple spots of necrotizing pneumonia, and the residual lung parenchyma displayed a pattern of acute lung injury with diffuse alveolar damage.
T78 7608-7787 Sentence denotes In addition to the presence of bronchopneumonia, we distinctly show fungi (hyphae and conidia) within blood vessels, the hallmark of the invasive disease triggered by this fungus.
T79 7788-7937 Sentence denotes The presence of GM in bronchoalveolar lavage is a useful marker, but this procedure is not performed in many COVID-19 patients for biosafety reasons.
T80 7938-8158 Sentence denotes However, the identification of this antigen in peripheral blood, a test that is usually negative, is seemingly a reliable marker of invasive disease, especially in our case, in which the invasion of vessels was observed.
T81 8159-8405 Sentence denotes In addition, it is important to consider that the use of medications, such as oseltamivir, which is preemptively prescribed for influenza infection, may potentially block host neuraminidase, thus increasing patient susceptibility to IPA 5 , 6 .
T82 8406-8528 Sentence denotes The use of corticosteroids, which is still a matter of debate in COVID-19 treatment, may also facilitate invasive disease.
T83 8529-8637 Sentence denotes Therefore, we recommend caution in the use of corticosteroids and oseltamivir to treat SARS-CoV-2 infection.
T84 8638-8740 Sentence denotes Meanwhile, chloroquine has been proposed as a drug with antifungal and immune response properties 11 .
T85 8741-8924 Sentence denotes As the patient clinical status was already critical upon his arrival and he died three days after hospitalization, the possibility of a hospital-acquired fungal infection is unlikely.
T86 8925-9119 Sentence denotes It is possible that aspergillosis could predispose patients with COVID-19 to clinical worsening, and it is therefore necessary to further assess this two-way interaction between both infections.
T87 9120-9256 Sentence denotes A. penicillioides is a xerophilic species occurring in dry habitats and in house dust; it is responsible for human and animal allergies.
T88 9257-9375 Sentence denotes Dry oxygen supplementation intended to prevent aerosolization could explain the infection caused by this pathogen 12 .
T89 9376-9481 Sentence denotes To the best of our knowledge, this is the fourth clinical report on A. penicillioides clinical infection.
T90 9482-9636 Sentence denotes The other three are classified as keratitis, disseminated disease in a child with cystic fibrosis, and central nervous system arteritis 13 , 14 , 15 .
T91 9637-9748 Sentence denotes No information is available on the antifungal sensitivity of this species or the frequency of invasive disease.
T92 9749-9848 Sentence denotes In conclusion, we report a case of IPA in a patient with severe pneumonia associated with COVID-19.
T93 9849-10051 Sentence denotes Using a gold standard method (histopathology) in our case series, the frequency of IPA was lower, as compared to that of cases published elsewhere; possible overestimation might be due to contamination.
T94 10052-10245 Sentence denotes In our case, no CT imaging of the lung, sequential GM, or culture for fungus was performed, thus reinforcing the role of autopsies as a form of postmortem surveillance of such a severe disease.
T95 10246-10449 Sentence denotes As the outbreak of COVID-19 continues to spread around the world, further reports are needed to assess the occurrence and frequency of IPA in severe SARS-CoV-2 infections, and their clinical interaction.
T96 10450-10622 Sentence denotes These studies are needed to assess the incidence of IPA and define at-risk populations, thus offering a strategy for diagnosis, prophylaxis, and timely clinical management.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T6 133-142 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T7 147-153 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806
T8 212-232 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T9 469-488 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T10 518-527 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T11 640-672 Phenotype denotes invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T12 674-677 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T13 713-716 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T14 1137-1140 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T15 2415-2427 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T16 2429-2454 Phenotype denotes type II diabetes mellitus http://purl.obolibrary.org/obo/HP_0005978
T17 2460-2482 Phenotype denotes chronic kidney disease http://purl.obolibrary.org/obo/HP_0012622
T18 2896-2904 Phenotype denotes cyanosis http://purl.obolibrary.org/obo/HP_0000961
T19 3041-3051 Phenotype denotes aspiration http://purl.obolibrary.org/obo/HP_0002835
T20 3804-3816 Phenotype denotes neutrophilia http://purl.obolibrary.org/obo/HP_0011897
T21 3828-3839 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T22 4125-4130 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273
T23 4150-4161 Phenotype denotes hypotension http://purl.obolibrary.org/obo/HP_0002615
T24 4166-4177 Phenotype denotes bradycardia http://purl.obolibrary.org/obo/HP_0001662
T25 6762-6765 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T26 6860-6863 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T27 6997-7022 Phenotype denotes Type II diabetes mellitus http://purl.obolibrary.org/obo/HP_0005978
T28 7027-7049 Phenotype denotes chronic kidney disease http://purl.obolibrary.org/obo/HP_0012622
T29 7369-7372 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T30 7396-7399 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T31 7493-7502 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T32 7560-7577 Phenotype denotes acute lung injury http://www.orpha.net/ORDO/Orphanet_178320
T33 7583-7606 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T34 8392-8395 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T35 9516-9525 Phenotype denotes keratitis http://purl.obolibrary.org/obo/HP_0000491
T36 9608-9617 Phenotype denotes arteritis http://purl.obolibrary.org/obo/HP_0012089
T37 9784-9787 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T38 9813-9822 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T39 9932-9935 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T40 10381-10384 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T41 10388-10416 Phenotype denotes severe SARS-CoV-2 infections http://purl.obolibrary.org/obo/HP_0033141
T42 10502-10505 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103

2_test

Id Subject Object Predicate Lexical cue
32638890-12890854-134289058 349-350 12890854 denotes 2
32638890-30299367-134289059 528-529 30299367 denotes 3
32638890-30076119-134289060 679-680 30076119 denotes 4
32638890-30299367-134289061 801-802 30299367 denotes 3
32638890-29325970-134289062 908-909 29325970 denotes 5
32638890-12890854-134289063 930-931 12890854 denotes 2
32638890-32470620-134289064 1110-1111 32470620 denotes 8
32638890-32470620-134289065 1318-1319 32470620 denotes 8
32638890-29325970-134289066 1855-1856 29325970 denotes 5
32638890-20392915-134289067 6249-6251 20392915 denotes 10
32638890-32470620-134289068 7307-7308 32470620 denotes 8
32638890-29325970-134289069 8396-8397 29325970 denotes 5
32638890-23482646-134289070 8736-8738 23482646 denotes 11
32638890-28440960-134289071 9371-9373 28440960 denotes 12
32638890-26579953-134289072 9618-9620 26579953 denotes 13
32638890-31667056-134289073 9632-9634 31667056 denotes 15

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T16 13-21 SP_7 denotes COVID-19
T17 212-223 UBERON:0001004 denotes respiratory
T18 249-254 NCBITaxon:10239 denotes viral
T19 275-285 SP_7 denotes SARS-CoV-2
T20 469-480 UBERON:0001004 denotes respiratory
T21 649-658 UBERON:0002048 denotes pulmonary
T22 844-849 CHEBI:23888;CHEBI:23888 denotes drugs
T23 859-870 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T24 875-890 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T25 970-981 UBERON:0001004 denotes respiratory
T26 992-996 SP_10 denotes SARS
T27 1003-1007 GO:0016265 denotes died
T28 1056-1071 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T29 1181-1189 SP_7 denotes COVID-19
T30 1222-1226 GO:0040007 denotes grew
T31 1227-1248 NCBITaxon:746128 denotes Aspergillus fumigatus
T32 1268-1273 UBERON:0001977 denotes serum
T33 1274-1287 CHEBI:27680;CHEBI:27680 denotes galactomannan
T34 1293-1300 CHEBI:59132;CHEBI:59132 denotes antigen
T35 1348-1357 UBERON:0002048 denotes pulmonary
T36 1370-1380 GO:0016265 denotes postmortem
T37 1512-1520 SP_7 denotes COVID-19
T38 1583-1594 NCBITaxon:5052 denotes Aspergillus
T39 1608-1619 UBERON:0001004 denotes respiratory
T40 1676-1681 UBERON:0000178 denotes blood
T41 1700-1708 SP_7 denotes COVID-19
T42 1726-1735 UBERON:0007221 denotes care unit
T43 1917-1925 SP_7 denotes COVID-19
T44 2038-2042 UBERON:0002048 denotes Lung
T45 2198-2206 SP_7 denotes COVID-19
T46 2302-2308 GO:0016265 denotes deaths
T47 2468-2474 UBERON:0002113 denotes kidney
T48 2609-2617 SP_7 denotes COVID-19
T49 2721-2729 SP_7 denotes COVID-19
T50 2791-2802 UBERON:0006060 denotes orotracheal
T51 2845-2850 CHEBI:23888;CHEBI:23888 denotes drugs
T52 3070-3074 UBERON:0000025 denotes tube
T53 3139-3143 CHEBI:16526;CHEBI:16526 denotes FiO2
T54 3148-3159 UBERON:0001004 denotes respiratory
T55 3233-3244 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T56 3269-3280 CHEBI:3638;CHEBI:3638;DG_10 denotes chloroquine
T57 3340-3352 CHEBI:2955;CHEBI:2955;DG_6 denotes azithromycin
T58 3370-3381 CHEBI:29007;CHEBI:29007 denotes ceftriaxone
T59 3395-3405 CHEBI:47426;CHEBI:47426 denotes furosemide
T60 3475-3489 CHEBI:50858;CHEBI:50858 denotes corticosteroid
T61 3490-3495 CHEBI:23888;CHEBI:23888 denotes drugs
T62 3546-3550 CHEBI:16199;CHEBI:16199 denotes urea
T63 3566-3576 CHEBI:16737;CHEBI:16737 denotes creatinine
T64 3595-3613 PR:000005897 denotes C-reactive protein
T65 3721-3731 CL:0000738 denotes Leukocytes
T66 3742-3751 CL:0000233 denotes platelets
T67 3804-3816 CL:0000775 denotes neutrophilia
T68 3944-3948 UBERON:0002171 denotes lobe
T69 3976-3981 UBERON:0000178 denotes Blood
T70 4007-4016 NCBITaxon:2 denotes bacterial
T71 4182-4186 GO:0016265 denotes died
T72 4334-4339 GO:0016265 denotes death
T73 4619-4623 UBERON:0002048 denotes lung
T74 4673-4678 UBERON:0000101 denotes lower
T75 4679-4683 UBERON:0002171 denotes lobe
T76 4718-4722 UBERON:0002048 denotes lung
T77 4762-4773 NCBITaxon:5052 denotes Aspergillus
T78 4807-4813 NCBITaxon:4751 denotes fungal
T79 4853-4857 UBERON:0000033 denotes head
T80 4924-4930 UBERON:0010210;CHEBI:5054;CHEBI:5054 denotes fibrin
T81 4931-4938 UBERON:0010210 denotes thrombi
T82 4952-4958 UBERON:0001637 denotes artery
T83 5018-5023 UBERON:0000178 denotes blood
T84 5051-5058 CHEBI:59132;CHEBI:59132 denotes antigen
T85 5103-5113 GO:0016265 denotes postmortem
T86 5152-5162 GO:0016265 denotes antemortem
T87 5167-5173 UBERON:0007311 denotes sputum
T88 5192-5198 NCBITaxon:4751 denotes fungus
T89 5214-5224 CHEBI:35718;CHEBI:35718 denotes antifungal
T90 5225-5230 CHEBI:86327;CHEBI:86327 denotes drugs
T91 5275-5279 UBERON:0002048 denotes lung
T92 5304-5310 NCBITaxon:4751 denotes fungal
T93 5327-5328 CHEBI:51686;CHEBI:51686 denotes H
T94 5399-5405 NCBITaxon:4751 denotes fungal
T95 5436-5447 NCBITaxon:5052 denotes Aspergillus
T96 5448-5452 UBERON:0000033 denotes head
T97 5521-5527 NCBITaxon:4751 denotes fungal
T98 5797-5804 UBERON:0003215 denotes alveoli
T99 5815-5826 CL:0000775 denotes neutrophils
T100 5828-5829 CHEBI:51686;CHEBI:51686 denotes H
T101 5843-5849 CHEBI:5054;CHEBI:5054;UBERON:0010210 denotes Fibrin
T102 5850-5857 UBERON:0010210 denotes thrombi
T103 5883-5889 UBERON:0001637 denotes artery
T104 5891-5892 CHEBI:51686;CHEBI:51686 denotes H
T105 5928-5936 UBERON:0003215;CL:0000322 denotes alveolar
T106 5937-5947 CL:0000322;UBERON:0000483 denotes epithelial
T107 5948-5953 CL:0000322 denotes cells
T108 5955-5956 CHEBI:51686;CHEBI:51686 denotes H
T127 6000-6011 NCBITaxon:5052 denotes Aspergillus
T128 6127-6136 GO:0005840 denotes ribosomal
T129 6212-6219 SO:0000112 denotes primers
T130 6364-6371 SO:0000112 denotes primers
T131 6441-6447 SO:0000149 denotes contig
T132 6587-6613 NCBITaxon:41959 denotes Aspergillus penicillioides
T133 6801-6809 SP_7 denotes COVID-19
T134 7035-7041 UBERON:0002113 denotes kidney
T135 7323-7333 GO:0016265 denotes postmortem
T136 7334-7338 UBERON:0002048 denotes lung
T137 7377-7385 SP_7 denotes COVID-19
T138 7421-7430 UBERON:0004242 denotes bronchial
T139 7431-7435 UBERON:0000060 denotes wall
T140 7521-7536 UBERON:0008946 denotes lung parenchyma
T141 7566-7570 UBERON:0002048 denotes lung
T142 7591-7599 UBERON:0003215 denotes alveolar
T143 7676-7681 NCBITaxon:4751 denotes fungi
T144 7710-7723 UBERON:0001981 denotes blood vessels
T145 7780-7786 NCBITaxon:4751 denotes fungus
T146 7810-7825 UBERON:0002186 denotes bronchoalveolar
T147 7897-7905 SP_7 denotes COVID-19
T148 7974-7981 CHEBI:59132;CHEBI:59132 denotes antigen
T149 7996-8001 UBERON:0000178 denotes blood
T150 8137-8144 UBERON:0000055 denotes vessels
T151 8237-8248 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T152 8417-8432 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T153 8471-8479 SP_7 denotes COVID-19
T154 8575-8590 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T155 8595-8606 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T156 8616-8626 SP_7 denotes SARS-CoV-2
T157 8649-8660 CHEBI:3638;DG_10;CHEBI:3638 denotes chloroquine
T158 8684-8688 CHEBI:23888;CHEBI:23888 denotes drug
T159 8709-8715 UBERON:0002405;GO:0006955 denotes immune
T160 8716-8724 GO:0006955 denotes response
T161 8817-8821 GO:0016265 denotes died
T162 8895-8901 NCBITaxon:4751 denotes fungal
T163 8990-8998 SP_7 denotes COVID-19
T164 9154-9161 NCBITaxon:species denotes species
T165 9229-9234 SP_6;NCBITaxon:9606 denotes human
T166 9239-9245 NCBITaxon:33208 denotes animal
T167 9444-9445 NCBITaxon:8296 denotes A
T168 9585-9607 UBERON:0001017 denotes central nervous system
T169 9703-9710 NCBITaxon:species denotes species
T170 9839-9847 SP_7 denotes COVID-19
T171 10086-10090 UBERON:0002048 denotes lung
T172 10122-10128 NCBITaxon:4751 denotes fungus
T173 10196-10206 GO:0016265 denotes postmortem
T174 10207-10219 GO:0065007 denotes surveillance
T175 10265-10273 SP_7 denotes COVID-19
T176 10395-10405 SP_7 denotes SARS-CoV-2
T10975 13-21 SP_7 denotes COVID-19
T9972 212-223 UBERON:0001004 denotes respiratory
T44879 249-254 NCBITaxon:10239 denotes viral
T10889 275-285 SP_7 denotes SARS-CoV-2
T56159 469-480 UBERON:0001004 denotes respiratory
T87696 649-658 UBERON:0002048 denotes pulmonary
T74450 844-849 CHEBI:23888;CHEBI:23888 denotes drugs
T70529 859-870 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T54454 875-890 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T90991 970-981 UBERON:0001004 denotes respiratory
T80841 992-996 SP_10 denotes SARS
T15928 1003-1007 GO:0016265 denotes died
T2908 1056-1071 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T17935 1181-1189 SP_7 denotes COVID-19
T49431 1222-1226 GO:0040007 denotes grew
T73074 1227-1248 NCBITaxon:746128 denotes Aspergillus fumigatus
T55704 1268-1273 UBERON:0001977 denotes serum
T61728 1274-1287 CHEBI:27680;CHEBI:27680 denotes galactomannan
T66622 1293-1300 CHEBI:59132;CHEBI:59132 denotes antigen
T77392 1348-1357 UBERON:0002048 denotes pulmonary
T64062 1370-1380 GO:0016265 denotes postmortem
T85604 1512-1520 SP_7 denotes COVID-19
T74035 1583-1594 NCBITaxon:5052 denotes Aspergillus
T644 1608-1619 UBERON:0001004 denotes respiratory
T47982 1676-1681 UBERON:0000178 denotes blood
T97836 1700-1708 SP_7 denotes COVID-19
T31476 1726-1735 UBERON:0007221 denotes care unit
T4469 1917-1925 SP_7 denotes COVID-19
T35848 2038-2042 UBERON:0002048 denotes Lung
T65233 2198-2206 SP_7 denotes COVID-19
T63671 2302-2308 GO:0016265 denotes deaths
T98313 2468-2474 UBERON:0002113 denotes kidney
T14556 2609-2617 SP_7 denotes COVID-19
T45329 2721-2729 SP_7 denotes COVID-19
T62007 2791-2802 UBERON:0006060 denotes orotracheal
T81053 2845-2850 CHEBI:23888;CHEBI:23888 denotes drugs
T84418 3070-3074 UBERON:0000025 denotes tube
T13632 3139-3143 CHEBI:16526;CHEBI:16526 denotes FiO2
T35862 3148-3159 UBERON:0001004 denotes respiratory
T24320 3233-3244 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T83491 3269-3280 CHEBI:3638;CHEBI:3638;DG_10 denotes chloroquine
T9292 3340-3352 CHEBI:2955;CHEBI:2955;DG_6 denotes azithromycin
T19984 3370-3381 CHEBI:29007;CHEBI:29007 denotes ceftriaxone
T4490 3395-3405 CHEBI:47426;CHEBI:47426 denotes furosemide
T37947 3475-3489 CHEBI:50858;CHEBI:50858 denotes corticosteroid
T19256 3490-3495 CHEBI:23888;CHEBI:23888 denotes drugs
T6586 3546-3550 CHEBI:16199;CHEBI:16199 denotes urea
T20602 3566-3576 CHEBI:16737;CHEBI:16737 denotes creatinine
T37535 3595-3613 PR:000005897 denotes C-reactive protein
T59138 3721-3731 CL:0000738 denotes Leukocytes
T94991 3742-3751 CL:0000233 denotes platelets
T9825 3804-3816 CL:0000775 denotes neutrophilia
T4481 3944-3948 UBERON:0002171 denotes lobe
T6767 3976-3981 UBERON:0000178 denotes Blood
T5667 4007-4016 NCBITaxon:2 denotes bacterial
T1728 4182-4186 GO:0016265 denotes died
T27792 4334-4339 GO:0016265 denotes death
T45015 4619-4623 UBERON:0002048 denotes lung
T95141 4673-4678 UBERON:0000101 denotes lower
T63510 4679-4683 UBERON:0002171 denotes lobe
T50592 4718-4722 UBERON:0002048 denotes lung
T54529 4762-4773 NCBITaxon:5052 denotes Aspergillus
T53412 4807-4813 NCBITaxon:4751 denotes fungal
T84391 4853-4857 UBERON:0000033 denotes head
T7647 4924-4930 UBERON:0010210;CHEBI:5054;CHEBI:5054 denotes fibrin
T64013 4931-4938 UBERON:0010210 denotes thrombi
T81261 4952-4958 UBERON:0001637 denotes artery
T18084 5018-5023 UBERON:0000178 denotes blood
T70655 5051-5058 CHEBI:59132;CHEBI:59132 denotes antigen
T71653 5103-5113 GO:0016265 denotes postmortem
T7484 5152-5162 GO:0016265 denotes antemortem
T96965 5167-5173 UBERON:0007311 denotes sputum
T78632 5192-5198 NCBITaxon:4751 denotes fungus
T68516 5214-5224 CHEBI:35718;CHEBI:35718 denotes antifungal
T92277 5225-5230 CHEBI:86327;CHEBI:86327 denotes drugs
T81207 5275-5279 UBERON:0002048 denotes lung
T65437 5304-5310 NCBITaxon:4751 denotes fungal
T92241 5327-5328 CHEBI:51686;CHEBI:51686 denotes H
T64480 5399-5405 NCBITaxon:4751 denotes fungal
T74480 5436-5447 NCBITaxon:5052 denotes Aspergillus
T31521 5448-5452 UBERON:0000033 denotes head
T29491 5521-5527 NCBITaxon:4751 denotes fungal
T83684 5797-5804 UBERON:0003215 denotes alveoli
T62000 5815-5826 CL:0000775 denotes neutrophils
T43627 5828-5829 CHEBI:51686;CHEBI:51686 denotes H
T39112 5843-5849 CHEBI:5054;CHEBI:5054;UBERON:0010210 denotes Fibrin
T37990 5850-5857 UBERON:0010210 denotes thrombi
T93077 5883-5889 UBERON:0001637 denotes artery
T41475 5891-5892 CHEBI:51686;CHEBI:51686 denotes H
T29535 5928-5936 UBERON:0003215;CL:0000322 denotes alveolar
T32471 5937-5947 CL:0000322;UBERON:0000483 denotes epithelial
T46776 5948-5953 CL:0000322 denotes cells
T9064 5955-5956 CHEBI:51686;CHEBI:51686 denotes H
T358 6000-6011 NCBITaxon:5052 denotes Aspergillus
T55757 6127-6136 GO:0005840 denotes ribosomal
T8859 6212-6219 SO:0000112 denotes primers
T66811 6364-6371 SO:0000112 denotes primers
T27374 6441-6447 SO:0000149 denotes contig
T19455 6587-6613 NCBITaxon:41959 denotes Aspergillus penicillioides
T82423 6801-6809 SP_7 denotes COVID-19
T34071 7035-7041 UBERON:0002113 denotes kidney
T61699 7323-7333 GO:0016265 denotes postmortem
T93941 7334-7338 UBERON:0002048 denotes lung
T73256 7377-7385 SP_7 denotes COVID-19
T83346 7421-7430 UBERON:0004242 denotes bronchial
T74144 7431-7435 UBERON:0000060 denotes wall
T44419 7521-7536 UBERON:0008946 denotes lung parenchyma
T67181 7566-7570 UBERON:0002048 denotes lung
T79335 7591-7599 UBERON:0003215 denotes alveolar
T86622 7676-7681 NCBITaxon:4751 denotes fungi
T73261 7710-7723 UBERON:0001981 denotes blood vessels
T66563 7780-7786 NCBITaxon:4751 denotes fungus
T54734 7810-7825 UBERON:0002186 denotes bronchoalveolar
T1262 7897-7905 SP_7 denotes COVID-19
T38840 7974-7981 CHEBI:59132;CHEBI:59132 denotes antigen
T52237 7996-8001 UBERON:0000178 denotes blood
T44074 8137-8144 UBERON:0000055 denotes vessels
T51918 8237-8248 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T80887 8417-8432 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T94411 8471-8479 SP_7 denotes COVID-19
T32486 8575-8590 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T69774 8595-8606 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T10050 8616-8626 SP_7 denotes SARS-CoV-2
T11082 8649-8660 CHEBI:3638;DG_10;CHEBI:3638 denotes chloroquine
T74372 8684-8688 CHEBI:23888;CHEBI:23888 denotes drug
T87907 8709-8715 UBERON:0002405;GO:0006955 denotes immune
T30095 8716-8724 GO:0006955 denotes response
T9576 8817-8821 GO:0016265 denotes died
T74942 8895-8901 NCBITaxon:4751 denotes fungal
T51897 8990-8998 SP_7 denotes COVID-19
T28441 9154-9161 NCBITaxon:species denotes species
T32148 9229-9234 SP_6;NCBITaxon:9606 denotes human
T62069 9239-9245 NCBITaxon:33208 denotes animal
T83688 9444-9445 NCBITaxon:8296 denotes A
T72912 9585-9607 UBERON:0001017 denotes central nervous system
T85719 9703-9710 NCBITaxon:species denotes species
T94369 9839-9847 SP_7 denotes COVID-19
T82530 10086-10090 UBERON:0002048 denotes lung
T25732 10122-10128 NCBITaxon:4751 denotes fungus
T91787 10196-10206 GO:0016265 denotes postmortem
T81843 10207-10219 GO:0065007 denotes surveillance
T28979 10265-10273 SP_7 denotes COVID-19
T62679 10395-10405 SP_7 denotes SARS-CoV-2