PMC:7341831 / 705-11327
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T3 | 1268-1273 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
T4 | 1676-1681 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
T5 | 2038-2042 | Body_part | denotes | Lung | http://purl.org/sig/ont/fma/fma7195 |
T6 | 2468-2474 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
T7 | 2914-2925 | Body_part | denotes | extremities | http://purl.org/sig/ont/fma/fma7182 |
T8 | 2957-2971 | Body_part | denotes | norepinephrine | http://purl.org/sig/ont/fma/fma61799 |
T9 | 3606-3613 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T10 | 3721-3731 | Body_part | denotes | Leukocytes | http://purl.org/sig/ont/fma/fma62852 |
T11 | 3742-3751 | Body_part | denotes | platelets | http://purl.org/sig/ont/fma/fma62851 |
T12 | 3764-3774 | Body_part | denotes | hemoglobin | http://purl.org/sig/ont/fma/fma62293 |
T13 | 3868-3873 | Body_part | denotes | Chest | http://purl.org/sig/ont/fma/fma9576 |
T14 | 3932-3948 | Body_part | denotes | right lower lobe | http://purl.org/sig/ont/fma/fma7337 |
T15 | 3976-3981 | Body_part | denotes | Blood | http://purl.org/sig/ont/fma/fma9670 |
T16 | 4619-4623 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
T17 | 4667-4683 | Body_part | denotes | right lower lobe | http://purl.org/sig/ont/fma/fma7337 |
T18 | 4718-4722 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
T19 | 4853-4857 | Body_part | denotes | head | http://purl.org/sig/ont/fma/fma7154 |
T20 | 4952-4958 | Body_part | denotes | artery | http://purl.org/sig/ont/fma/fma50720 |
T21 | 5018-5023 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
T22 | 5167-5173 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
T23 | 5275-5279 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
T24 | 5448-5452 | Body_part | denotes | head | http://purl.org/sig/ont/fma/fma7154 |
T25 | 5815-5826 | Body_part | denotes | neutrophils | http://purl.org/sig/ont/fma/fma62860 |
T26 | 5883-5889 | Body_part | denotes | artery | http://purl.org/sig/ont/fma/fma50720 |
T27 | 5928-5953 | Body_part | denotes | alveolar epithelial cells | http://purl.org/sig/ont/fma/fma62499 |
T28 | 5948-5953 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T29 | 6033-6043 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
T30 | 6127-6136 | Body_part | denotes | ribosomal | http://purl.org/sig/ont/fma/fma66867 |
T31 | 6137-6140 | Body_part | denotes | DNA | http://purl.org/sig/ont/fma/fma74412 |
T32 | 7035-7041 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
T33 | 7334-7338 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
T34 | 7421-7435 | Body_part | denotes | bronchial wall | http://purl.org/sig/ont/fma/fma13121|http://purl.org/sig/ont/fma/fma67480 |
T36 | 7521-7536 | Body_part | denotes | lung parenchyma | http://purl.org/sig/ont/fma/fma27360 |
T37 | 7566-7570 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
T38 | 7591-7599 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
T39 | 7710-7723 | Body_part | denotes | blood vessels | http://purl.org/sig/ont/fma/fma63183 |
T40 | 7710-7715 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
T41 | 7996-8001 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
T42 | 9585-9607 | Body_part | denotes | central nervous system | http://purl.org/sig/ont/fma/fma55675 |
T43 | 10086-10090 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T2 | 1268-1273 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
T3 | 1676-1681 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
T4 | 2038-2042 | Body_part | denotes | Lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
T5 | 2468-2474 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
T6 | 3070-3074 | Body_part | denotes | tube | http://purl.obolibrary.org/obo/UBERON_0000025 |
T7 | 3331-3335 | Body_part | denotes | tube | http://purl.obolibrary.org/obo/UBERON_0000025 |
T8 | 3868-3873 | Body_part | denotes | Chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
T9 | 3944-3948 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
T10 | 3976-3981 | Body_part | denotes | Blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
T11 | 4619-4623 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
T12 | 4679-4683 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
T13 | 4718-4722 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
T14 | 4853-4857 | Body_part | denotes | head | http://purl.obolibrary.org/obo/UBERON_0000033 |
T15 | 4952-4958 | Body_part | denotes | artery | http://purl.obolibrary.org/obo/UBERON_0001637 |
T16 | 5018-5023 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
T17 | 5167-5173 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
T18 | 5275-5279 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
T19 | 5448-5452 | Body_part | denotes | head | http://purl.obolibrary.org/obo/UBERON_0000033 |
T20 | 5883-5889 | Body_part | denotes | artery | http://purl.obolibrary.org/obo/UBERON_0001637 |
T21 | 7035-7041 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
T22 | 7334-7338 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
T23 | 7521-7536 | Body_part | denotes | lung parenchyma | http://purl.obolibrary.org/obo/UBERON_0008946 |
T24 | 7521-7525 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
T25 | 7526-7536 | Body_part | denotes | parenchyma | http://purl.obolibrary.org/obo/UBERON_0000353 |
T26 | 7566-7570 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
T27 | 7710-7723 | Body_part | denotes | blood vessels | http://purl.obolibrary.org/obo/UBERON_0001981 |
T28 | 7710-7715 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
T29 | 7716-7723 | Body_part | denotes | vessels | http://purl.obolibrary.org/obo/UBERON_0000055 |
T30 | 7996-8001 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
T31 | 8137-8144 | Body_part | denotes | vessels | http://purl.obolibrary.org/obo/UBERON_0000055 |
T32 | 9585-9607 | Body_part | denotes | central nervous system | http://purl.obolibrary.org/obo/UBERON_0001017 |
T33 | 9593-9607 | Body_part | denotes | nervous system | http://purl.obolibrary.org/obo/UBERON_0001016 |
T34 | 10086-10090 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
37 | 108-116 | Species | denotes | patients | Tax:9606 |
38 | 192-200 | Species | denotes | Patients | Tax:9606 |
39 | 275-285 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
40 | 413-421 | Species | denotes | patients | Tax:9606 |
41 | 13-21 | Disease | denotes | COVID-19 | MESH:C000657245 |
42 | 133-142 | Disease | denotes | pneumonia | MESH:D011014 |
43 | 147-153 | Disease | denotes | sepsis | MESH:D018805 |
44 | 206-241 | Disease | denotes | acute respiratory distress syndrome | MESH:D012128 |
45 | 249-265 | Disease | denotes | viral infections | MESH:D001102 |
46 | 335-348 | Disease | denotes | aspergillosis | MESH:D001228 |
47 | 353-375 | Disease | denotes | Invasive aspergillosis | MESH:D055744 |
48 | 469-488 | Disease | denotes | respiratory failure | MESH:D012131 |
49 | 518-527 | Disease | denotes | pneumonia | MESH:D011014 |
50 | 595-604 | Disease | denotes | infection | MESH:D007239 |
51 | 640-672 | Disease | denotes | invasive pulmonary aspergillosis | MESH:D055744 |
67 | 944-951 | Species | denotes | patient | Tax:9606 |
68 | 1160-1168 | Species | denotes | patients | Tax:9606 |
69 | 1227-1248 | Species | denotes | Aspergillus fumigatus | Tax:746128 |
70 | 1498-1506 | Species | denotes | patients | Tax:9606 |
71 | 1409-1420 | Species | denotes | Aspergillus | Tax:746128 |
72 | 859-870 | Chemical | denotes | oseltamivir | MESH:D053139 |
73 | 1274-1287 | Chemical | denotes | galactomannan | MESH:C012990 |
74 | 1289-1291 | Chemical | denotes | GM | MESH:C012990 |
75 | 741-750 | Disease | denotes | mortality | MESH:D003643 |
76 | 957-990 | Disease | denotes | severe acute respiratory syndrome | MESH:D045169 |
77 | 992-996 | Disease | denotes | SARS | MESH:D045169 |
78 | 1011-1024 | Disease | denotes | aspergillosis | MESH:D001228 |
79 | 1181-1189 | Disease | denotes | COVID-19 | MESH:C000657245 |
80 | 1467-1480 | Disease | denotes | aspergillosis | MESH:D001228 |
81 | 1512-1520 | Disease | denotes | COVID-19 | MESH:C000657245 |
88 | 1686-1694 | Species | denotes | patients | Tax:9606 |
89 | 1903-1911 | Species | denotes | patients | Tax:9606 |
90 | 1583-1594 | Species | denotes | Aspergillus | Tax:746128 |
91 | 1635-1637 | Chemical | denotes | GM | MESH:C012990 |
92 | 1700-1708 | Disease | denotes | COVID-19 | MESH:C000657245 |
93 | 1917-1925 | Disease | denotes | COVID-19 | MESH:C000657245 |
96 | 2198-2206 | Disease | denotes | COVID-19 | MESH:C000657245 |
97 | 2302-2308 | Disease | denotes | deaths | MESH:D003643 |
115 | 2385-2392 | Species | denotes | patient | Tax:9606 |
116 | 2595-2603 | Species | denotes | patients | Tax:9606 |
117 | 2633-2640 | Species | denotes | patient | Tax:9606 |
118 | 3216-3223 | Species | denotes | patient | Tax:9606 |
119 | 2957-2971 | Chemical | denotes | norepinephrine | MESH:D009638 |
120 | 3233-3244 | Chemical | denotes | oseltamivir | MESH:D053139 |
121 | 3269-3280 | Chemical | denotes | chloroquine | MESH:D002738 |
122 | 3340-3352 | Chemical | denotes | azithromycin | MESH:D017963 |
123 | 3370-3381 | Chemical | denotes | ceftriaxone | MESH:D002443 |
124 | 3395-3405 | Chemical | denotes | furosemide | MESH:D005665 |
125 | 3448-3458 | Chemical | denotes | enoxaparin | MESH:D017984 |
126 | 2415-2427 | Disease | denotes | hypertension | MESH:D006973 |
127 | 2429-2454 | Disease | denotes | type II diabetes mellitus | MESH:D003924 |
128 | 2460-2482 | Disease | denotes | chronic kidney disease | MESH:D051436 |
129 | 2609-2617 | Disease | denotes | COVID-19 | MESH:C000657245 |
130 | 2721-2729 | Disease | denotes | COVID-19 | MESH:C000657245 |
131 | 2896-2925 | Disease | denotes | cyanosis and cold extremities | MESH:D003490 |
139 | 3595-3613 | Gene | denotes | C-reactive protein | Gene:1401 |
140 | 3546-3550 | Chemical | denotes | urea | MESH:D014508 |
141 | 3566-3576 | Chemical | denotes | creatinine | MESH:D003404 |
142 | 3653-3662 | Chemical | denotes | potassium | MESH:D011188 |
143 | 3667-3673 | Chemical | denotes | sodium | MESH:D012964 |
144 | 3804-3816 | Disease | denotes | neutrophilia | MESH:C563010 |
145 | 3828-3839 | Disease | denotes | lymphopenia | MESH:D008231 |
151 | 4064-4071 | Species | denotes | patient | Tax:9606 |
152 | 4304-4311 | Species | denotes | patient | Tax:9606 |
153 | 4150-4161 | Disease | denotes | hypotension | MESH:D007022 |
154 | 4166-4177 | Disease | denotes | bradycardia | MESH:D001919 |
155 | 4334-4339 | Disease | denotes | death | MESH:D003643 |
162 | 4762-4773 | Species | denotes | Aspergillus | Tax:746128 |
163 | 4841-4852 | Species | denotes | Aspergillus | Tax:746128 |
164 | 5048-5050 | Chemical | denotes | GM | MESH:C012990 |
165 | 4906-4922 | Disease | denotes | bronchopneumonia | MESH:D001996 |
166 | 4964-4983 | Disease | denotes | squamous metaplasia | MESH:D008679 |
167 | 5119-5132 | Disease | denotes | aspergillosis | MESH:D001228 |
172 | 5436-5447 | Species | denotes | Aspergillus | Tax:746128 |
173 | 5327-5330 | Chemical | denotes | H&E | MESH:D006371 |
174 | 5775-5791 | Disease | denotes | Bronchopneumonia | MESH:D001996 |
175 | 5905-5924 | Disease | denotes | Squamous metaplasia | MESH:D008679 |
178 | 6587-6613 | Species | denotes | Aspergillus penicillioides | Tax:41959 |
179 | 6000-6011 | Species | denotes | Aspergillus | Tax:746128 |
196 | 6769-6777 | Species | denotes | patients | Tax:9606 |
197 | 6916-6923 | Species | denotes | patient | Tax:9606 |
198 | 7356-7363 | Species | denotes | patient | Tax:9606 |
199 | 7906-7914 | Species | denotes | patients | Tax:9606 |
200 | 7804-7806 | Chemical | denotes | GM | MESH:C012990 |
201 | 6801-6809 | Disease | denotes | COVID-19 | MESH:C000657245 |
202 | 6997-7022 | Disease | denotes | Type II diabetes mellitus | MESH:D003924 |
203 | 7027-7049 | Disease | denotes | chronic kidney disease | MESH:D051436 |
204 | 7377-7385 | Disease | denotes | COVID-19 | MESH:C000657245 |
205 | 7481-7502 | Disease | denotes | necrotizing pneumonia | MESH:D011014 |
206 | 7566-7577 | Disease | denotes | lung injury | MESH:D055370 |
207 | 7591-7606 | Disease | denotes | alveolar damage | MESH:D055370 |
208 | 7639-7655 | Disease | denotes | bronchopneumonia | MESH:D001996 |
209 | 7729-7761 | Disease | denotes | hallmark of the invasive disease | MESH:D009361 |
210 | 7897-7905 | Disease | denotes | COVID-19 | MESH:C000657245 |
211 | 8070-8086 | Disease | denotes | invasive disease | MESH:D009361 |
227 | 8335-8348 | Gene | denotes | neuraminidase | Gene:4758 |
228 | 8366-8373 | Species | denotes | patient | Tax:9606 |
229 | 8748-8755 | Species | denotes | patient | Tax:9606 |
230 | 8976-8984 | Species | denotes | patients | Tax:9606 |
231 | 8237-8248 | Chemical | denotes | oseltamivir | MESH:D053139 |
232 | 8595-8606 | Chemical | denotes | oseltamivir | MESH:D053139 |
233 | 8649-8660 | Chemical | denotes | chloroquine | MESH:D002738 |
234 | 8297-8306 | Disease | denotes | infection | MESH:D007239 |
235 | 8471-8479 | Disease | denotes | COVID-19 | MESH:C000657245 |
236 | 8511-8527 | Disease | denotes | invasive disease | MESH:D009361 |
237 | 8616-8636 | Disease | denotes | SARS-CoV-2 infection | MESH:C000657245 |
238 | 8895-8911 | Disease | denotes | fungal infection | MESH:D009181 |
239 | 8945-8958 | Disease | denotes | aspergillosis | MESH:D001228 |
240 | 8990-8998 | Disease | denotes | COVID-19 | MESH:C000657245 |
241 | 9108-9118 | Disease | denotes | infections | MESH:D007239 |
255 | 9120-9137 | Species | denotes | A. penicillioides | Tax:41959 |
256 | 9229-9234 | Species | denotes | human | Tax:9606 |
257 | 9444-9461 | Species | denotes | A. penicillioides | Tax:41959 |
258 | 9553-9558 | Species | denotes | child | Tax:9606 |
259 | 9261-9267 | Chemical | denotes | oxygen | MESH:D010100 |
260 | 9175-9187 | Disease | denotes | dry habitats | MESH:D015352 |
261 | 9337-9346 | Disease | denotes | infection | MESH:D007239 |
262 | 9471-9480 | Disease | denotes | infection | MESH:D007239 |
263 | 9516-9525 | Disease | denotes | keratitis | MESH:D007634 |
264 | 9527-9547 | Disease | denotes | disseminated disease | MESH:D009103 |
265 | 9564-9579 | Disease | denotes | cystic fibrosis | MESH:D003550 |
266 | 9585-9617 | Disease | denotes | central nervous system arteritis | MESH:D020943 |
267 | 9731-9747 | Disease | denotes | invasive disease | MESH:D009361 |
274 | 9793-9800 | Species | denotes | patient | Tax:9606 |
275 | 10103-10105 | Chemical | denotes | GM | MESH:C012990 |
276 | 9813-9822 | Disease | denotes | pneumonia | MESH:D011014 |
277 | 9839-9847 | Disease | denotes | COVID-19 | MESH:C000657245 |
278 | 10265-10273 | Disease | denotes | COVID-19 | MESH:C000657245 |
279 | 10395-10416 | Disease | denotes | SARS-CoV-2 infections | MESH:C000657245 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T10 | 13-21 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T11 | 67-70 | Disease | denotes | flu | http://purl.obolibrary.org/obo/MONDO_0005812 |
T12 | 133-142 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
T13 | 206-241 | Disease | denotes | acute respiratory distress syndrome | http://purl.obolibrary.org/obo/MONDO_0006502 |
T14 | 212-241 | Disease | denotes | respiratory distress syndrome | http://purl.obolibrary.org/obo/MONDO_0009971 |
T15 | 249-265 | Disease | denotes | viral infections | http://purl.obolibrary.org/obo/MONDO_0005108 |
T16 | 275-283 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T17 | 275-279 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T18 | 335-348 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
T19 | 353-375 | Disease | denotes | Invasive aspergillosis | http://purl.obolibrary.org/obo/MONDO_0000240 |
T20 | 362-375 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
T21 | 463-488 | Disease | denotes | acute respiratory failure | http://purl.obolibrary.org/obo/MONDO_0001208|http://purl.obolibrary.org/obo/MONDO_0021113 |
T23 | 500-509 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
T24 | 518-527 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
T25 | 585-604 | Disease | denotes | influenza infection | http://purl.obolibrary.org/obo/MONDO_0005812 |
T26 | 595-604 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T27 | 659-672 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
T28 | 692-701 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
T29 | 957-990 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
T30 | 992-996 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T31 | 1011-1024 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
T32 | 1181-1189 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T33 | 1467-1480 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
T34 | 1512-1520 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T35 | 1700-1708 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T36 | 1917-1925 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T37 | 2198-2206 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T38 | 2415-2427 | Disease | denotes | hypertension | http://purl.obolibrary.org/obo/MONDO_0005044 |
T39 | 2429-2454 | Disease | denotes | type II diabetes mellitus | http://purl.obolibrary.org/obo/MONDO_0005148 |
T40 | 2437-2445 | Disease | denotes | diabetes | http://purl.obolibrary.org/obo/MONDO_0005015 |
T41 | 2460-2482 | Disease | denotes | chronic kidney disease | http://purl.obolibrary.org/obo/MONDO_0005300 |
T42 | 2468-2482 | Disease | denotes | kidney disease | http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240 |
T44 | 2609-2617 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T45 | 2686-2688 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
T46 | 2721-2729 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T47 | 2771-2773 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
T48 | 3828-3839 | Disease | denotes | lymphopenia | http://purl.obolibrary.org/obo/MONDO_0003783 |
T49 | 4150-4161 | Disease | denotes | hypotension | http://purl.obolibrary.org/obo/MONDO_0005468 |
T50 | 4906-4922 | Disease | denotes | bronchopneumonia | http://purl.obolibrary.org/obo/MONDO_0005682 |
T51 | 5119-5132 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
T52 | 5536-5539 | Disease | denotes | PAS | http://purl.obolibrary.org/obo/MONDO_0004277 |
T53 | 5775-5791 | Disease | denotes | Bronchopneumonia | http://purl.obolibrary.org/obo/MONDO_0005682 |
T54 | 6801-6809 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T55 | 6997-7022 | Disease | denotes | Type II diabetes mellitus | http://purl.obolibrary.org/obo/MONDO_0005148 |
T56 | 7005-7022 | Disease | denotes | diabetes mellitus | http://purl.obolibrary.org/obo/MONDO_0005015 |
T57 | 7027-7049 | Disease | denotes | chronic kidney disease | http://purl.obolibrary.org/obo/MONDO_0005300 |
T58 | 7035-7049 | Disease | denotes | kidney disease | http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240 |
T60 | 7377-7385 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T61 | 7436-7446 | Disease | denotes | ulceration | http://purl.obolibrary.org/obo/MONDO_0043839 |
T62 | 7493-7502 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
T63 | 7560-7577 | Disease | denotes | acute lung injury | http://purl.obolibrary.org/obo/MONDO_0006502|http://purl.obolibrary.org/obo/MONDO_0015796 |
T65 | 7571-7577 | Disease | denotes | injury | http://purl.obolibrary.org/obo/MONDO_0021178 |
T66 | 7639-7655 | Disease | denotes | bronchopneumonia | http://purl.obolibrary.org/obo/MONDO_0005682 |
T67 | 7897-7905 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T68 | 8287-8306 | Disease | denotes | influenza infection | http://purl.obolibrary.org/obo/MONDO_0005812 |
T69 | 8297-8306 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T70 | 8471-8479 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T71 | 8616-8624 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T72 | 8616-8620 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T73 | 8627-8636 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T74 | 8814-8816 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
T75 | 8895-8911 | Disease | denotes | fungal infection | http://purl.obolibrary.org/obo/MONDO_0002041 |
T76 | 8902-8911 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T77 | 8945-8958 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
T78 | 8990-8998 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T79 | 9108-9118 | Disease | denotes | infections | http://purl.obolibrary.org/obo/MONDO_0005550 |
T80 | 9337-9346 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T81 | 9462-9480 | Disease | denotes | clinical infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T82 | 9516-9525 | Disease | denotes | keratitis | http://purl.obolibrary.org/obo/MONDO_0003085 |
T83 | 9564-9579 | Disease | denotes | cystic fibrosis | http://purl.obolibrary.org/obo/MONDO_0009061 |
T84 | 9608-9617 | Disease | denotes | arteritis | http://purl.obolibrary.org/obo/MONDO_0043494 |
T85 | 9813-9822 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
T86 | 9839-9847 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T87 | 10265-10273 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T88 | 10395-10403 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T89 | 10395-10399 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T90 | 10406-10416 | Disease | denotes | infections | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T5 | 430-431 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T6 | 532-533 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T7 | 901-902 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T8 | 942-943 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T9 | 1257-1258 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T10 | 1555-1562 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
T11 | 1676-1681 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
T12 | 1676-1681 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
T13 | 1885-1886 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T14 | 2038-2042 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | Lung |
T15 | 2038-2042 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | Lung |
T16 | 2082-2083 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T17 | 2144-2145 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T18 | 2366-2367 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T19 | 2368-2370 | http://purl.obolibrary.org/obo/CLO_0054055 | denotes | 71 |
T20 | 2380-2384 | http://purl.obolibrary.org/obo/UBERON_0003101 | denotes | male |
T21 | 2380-2384 | http://www.ebi.ac.uk/efo/EFO_0000970 | denotes | male |
T22 | 2468-2474 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
T23 | 2468-2474 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
T24 | 2468-2474 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
T25 | 2558-2559 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T26 | 2914-2925 | http://www.ebi.ac.uk/efo/EFO_0000876 | denotes | extremities |
T27 | 3070-3074 | http://purl.obolibrary.org/obo/UBERON_0000025 | denotes | tube |
T28 | 3317-3318 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T29 | 3331-3335 | http://purl.obolibrary.org/obo/UBERON_0000025 | denotes | tube |
T30 | 3868-3873 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | Chest |
T31 | 3976-3981 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | Blood |
T32 | 3976-3981 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | Blood |
T33 | 4619-4623 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
T34 | 4619-4623 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
T35 | 4718-4722 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
T36 | 4718-4722 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
T37 | 4826-4827 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T38 | 4853-4857 | http://purl.obolibrary.org/obo/UBERON_0000033 | denotes | head |
T39 | 4853-4857 | http://www.ebi.ac.uk/efo/EFO_0000964 | denotes | head |
T40 | 4952-4958 | http://purl.obolibrary.org/obo/UBERON_0001637 | denotes | artery |
T41 | 4952-4958 | http://www.ebi.ac.uk/efo/EFO_0000814 | denotes | artery |
T42 | 5018-5023 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
T43 | 5018-5023 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
T44 | 5024-5030 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
T45 | 5275-5279 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
T46 | 5275-5279 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
T47 | 5281-5282 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T48 | 5420-5421 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
T49 | 5448-5452 | http://purl.obolibrary.org/obo/UBERON_0000033 | denotes | head |
T50 | 5448-5452 | http://www.ebi.ac.uk/efo/EFO_0000964 | denotes | head |
T51 | 5868-5869 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T52 | 5883-5889 | http://purl.obolibrary.org/obo/UBERON_0001637 | denotes | artery |
T53 | 5883-5889 | http://www.ebi.ac.uk/efo/EFO_0000814 | denotes | artery |
T54 | 5937-5947 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
T55 | 5948-5953 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T56 | 7035-7041 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
T57 | 7035-7041 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
T58 | 7035-7041 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
T59 | 7334-7338 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
T60 | 7334-7338 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
T61 | 7354-7355 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T62 | 7521-7525 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
T63 | 7521-7525 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
T64 | 7547-7548 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T65 | 7566-7570 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
T66 | 7566-7570 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
T67 | 7710-7723 | http://purl.obolibrary.org/obo/UBERON_0001981 | denotes | blood vessels |
T68 | 7710-7723 | http://www.ebi.ac.uk/efo/EFO_0000817 | denotes | blood vessels |
T69 | 7836-7837 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T70 | 7996-8001 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
T71 | 7996-8001 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
T72 | 8003-8004 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T73 | 8005-8009 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
T74 | 8049-8050 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T75 | 8137-8144 | http://purl.obolibrary.org/obo/UBERON_0000055 | denotes | vessels |
T76 | 8449-8450 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T77 | 8661-8664 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T78 | 8682-8683 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T79 | 8736-8738 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
T80 | 8875-8876 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T81 | 9120-9121 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T82 | 9141-9142 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T83 | 9229-9234 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T84 | 9239-9245 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animal |
T85 | 9444-9445 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T86 | 9551-9552 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T87 | 9585-9607 | http://purl.obolibrary.org/obo/UBERON_0001017 | denotes | central nervous system |
T88 | 9585-9607 | http://www.ebi.ac.uk/efo/EFO_0000302 | denotes | central nervous system |
T89 | 9585-9607 | http://www.ebi.ac.uk/efo/EFO_0000908 | denotes | central nervous system |
T90 | 9774-9775 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T91 | 9791-9792 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T92 | 9855-9856 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T93 | 10086-10090 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
T94 | 10086-10090 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
T95 | 10186-10187 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T96 | 10228-10229 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T97 | 10552-10553 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T11 | 674-677 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
T13 | 713-716 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
T15 | 844-849 | Chemical | denotes | drugs | http://purl.obolibrary.org/obo/CHEBI_23888 |
T16 | 859-870 | Chemical | denotes | oseltamivir | http://purl.obolibrary.org/obo/CHEBI_7798 |
T17 | 875-890 | Chemical | denotes | corticosteroids | http://purl.obolibrary.org/obo/CHEBI_50858 |
T18 | 1056-1071 | Chemical | denotes | corticosteroids | http://purl.obolibrary.org/obo/CHEBI_50858 |
T19 | 1137-1140 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
T21 | 1274-1287 | Chemical | denotes | galactomannan | http://purl.obolibrary.org/obo/CHEBI_27680 |
T22 | 1289-1291 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
T24 | 1293-1300 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
T25 | 1635-1637 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
T27 | 2084-2088 | Chemical | denotes | gold | http://purl.obolibrary.org/obo/CHEBI_29287|http://purl.obolibrary.org/obo/CHEBI_30050 |
T29 | 2380-2384 | Chemical | denotes | male | http://purl.obolibrary.org/obo/CHEBI_30780 |
T30 | 2434-2436 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
T31 | 2845-2850 | Chemical | denotes | drugs | http://purl.obolibrary.org/obo/CHEBI_23888 |
T32 | 2957-2971 | Chemical | denotes | norepinephrine | http://purl.obolibrary.org/obo/CHEBI_18357|http://purl.obolibrary.org/obo/CHEBI_33569 |
T34 | 3131-3135 | Chemical | denotes | PEEP | http://purl.obolibrary.org/obo/CHEBI_53359|http://purl.obolibrary.org/obo/CHEBI_60683 |
T36 | 3233-3244 | Chemical | denotes | oseltamivir | http://purl.obolibrary.org/obo/CHEBI_7798 |
T37 | 3269-3280 | Chemical | denotes | chloroquine | http://purl.obolibrary.org/obo/CHEBI_3638 |
T38 | 3337-3339 | Chemical | denotes | IV | http://purl.obolibrary.org/obo/CHEBI_74327 |
T39 | 3340-3352 | Chemical | denotes | azithromycin | http://purl.obolibrary.org/obo/CHEBI_2955 |
T40 | 3367-3369 | Chemical | denotes | IV | http://purl.obolibrary.org/obo/CHEBI_74327 |
T41 | 3370-3381 | Chemical | denotes | ceftriaxone | http://purl.obolibrary.org/obo/CHEBI_29007 |
T42 | 3392-3394 | Chemical | denotes | IV | http://purl.obolibrary.org/obo/CHEBI_74327 |
T43 | 3395-3405 | Chemical | denotes | furosemide | http://purl.obolibrary.org/obo/CHEBI_47426 |
T44 | 3475-3489 | Chemical | denotes | corticosteroid | http://purl.obolibrary.org/obo/CHEBI_50858 |
T45 | 3490-3495 | Chemical | denotes | drugs | http://purl.obolibrary.org/obo/CHEBI_23888 |
T46 | 3546-3550 | Chemical | denotes | urea | http://purl.obolibrary.org/obo/CHEBI_16199 |
T47 | 3566-3576 | Chemical | denotes | creatinine | http://purl.obolibrary.org/obo/CHEBI_16737 |
T48 | 3606-3613 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T49 | 3653-3662 | Chemical | denotes | potassium | http://purl.obolibrary.org/obo/CHEBI_26216 |
T50 | 3667-3673 | Chemical | denotes | sodium | http://purl.obolibrary.org/obo/CHEBI_26708 |
T51 | 3764-3774 | Chemical | denotes | hemoglobin | http://purl.obolibrary.org/obo/CHEBI_35143 |
T52 | 5048-5050 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
T54 | 5051-5058 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
T55 | 5214-5230 | Chemical | denotes | antifungal drugs | http://purl.obolibrary.org/obo/CHEBI_35718|http://purl.obolibrary.org/obo/CHEBI_86327 |
T57 | 5225-5230 | Chemical | denotes | drugs | http://purl.obolibrary.org/obo/CHEBI_23888 |
T58 | 5536-5539 | Chemical | denotes | PAS | http://purl.obolibrary.org/obo/CHEBI_27565 |
T59 | 5843-5849 | Chemical | denotes | Fibrin | http://purl.obolibrary.org/obo/CHEBI_5054 |
T60 | 6033-6043 | Chemical | denotes | nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
T61 | 6137-6140 | Chemical | denotes | DNA | http://purl.obolibrary.org/obo/CHEBI_16991 |
T62 | 6762-6765 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
T64 | 6860-6863 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
T66 | 7002-7004 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
T67 | 7154-7164 | Chemical | denotes | antifungal | http://purl.obolibrary.org/obo/CHEBI_35718 |
T68 | 7369-7372 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
T70 | 7396-7399 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
T72 | 7804-7806 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
T74 | 7974-7981 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
T75 | 8237-8248 | Chemical | denotes | oseltamivir | http://purl.obolibrary.org/obo/CHEBI_7798 |
T76 | 8392-8395 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
T78 | 8417-8432 | Chemical | denotes | corticosteroids | http://purl.obolibrary.org/obo/CHEBI_50858 |
T79 | 8575-8590 | Chemical | denotes | corticosteroids | http://purl.obolibrary.org/obo/CHEBI_50858 |
T80 | 8595-8606 | Chemical | denotes | oseltamivir | http://purl.obolibrary.org/obo/CHEBI_7798 |
T81 | 8649-8660 | Chemical | denotes | chloroquine | http://purl.obolibrary.org/obo/CHEBI_3638 |
T82 | 8684-8688 | Chemical | denotes | drug | http://purl.obolibrary.org/obo/CHEBI_23888 |
T83 | 8694-8704 | Chemical | denotes | antifungal | http://purl.obolibrary.org/obo/CHEBI_35718 |
T84 | 9261-9267 | Chemical | denotes | oxygen | http://purl.obolibrary.org/obo/CHEBI_25805 |
T85 | 9672-9682 | Chemical | denotes | antifungal | http://purl.obolibrary.org/obo/CHEBI_35718 |
T86 | 9784-9787 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
T88 | 9857-9861 | Chemical | denotes | gold | http://purl.obolibrary.org/obo/CHEBI_29287|http://purl.obolibrary.org/obo/CHEBI_30050 |
T90 | 9932-9935 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
T92 | 10103-10105 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
T94 | 10381-10384 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
T96 | 10502-10505 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 249-265 | http://purl.obolibrary.org/obo/GO_0016032 | denotes | viral infections |
T2 | 770-782 | http://purl.obolibrary.org/obo/GO_0009405 | denotes | pathogenesis |
T3 | 1620-1630 | http://purl.obolibrary.org/obo/GO_0046903 | denotes | secretions |
T4 | 4017-4023 | http://purl.obolibrary.org/obo/GO_0040007 | denotes | growth |
T5 | 4973-4983 | http://purl.obolibrary.org/obo/GO_0036074 | denotes | metaplasia |
T6 | 5712-5722 | http://purl.obolibrary.org/obo/GO_0000917 | denotes | septations |
T7 | 5914-5924 | http://purl.obolibrary.org/obo/GO_0036074 | denotes | metaplasia |
T8 | 8709-8724 | http://purl.obolibrary.org/obo/GO_0006955 | denotes | immune response |
LitCovid-PD-GlycoEpitope
Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
---|---|---|---|---|---|
T2 | 1274-1287 | GlycoEpitope | denotes | galactomannan | http://www.glycoepitope.jp/epitopes/EP0510 |
T3 | 1289-1291 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
T4 | 1635-1637 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
T5 | 5048-5050 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
T6 | 7804-7806 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
T7 | 10103-10105 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T10 | 0-12 | Sentence | denotes | INTRODUCTION |
T11 | 13-191 | Sentence | denotes | COVID-19 is characterized by asymptomatic and/or mild flu-like symptoms; however, about 20% of patients may progress to pneumonia and sepsis, thus requiring intensive support 1 . |
T12 | 192-352 | Sentence | denotes | Patients with acute respiratory distress syndrome due to viral infections, such as SARS-CoV-2, are prone to secondary complications, including aspergillosis 2 . |
T13 | 353-531 | Sentence | denotes | Invasive aspergillosis is not uncommon in immunocompromised patients, and is a well-described complication in acute respiratory failure and severe influenza-related pneumonia 3 . |
T14 | 532-682 | Sentence | denotes | A retrospective multicenter cohort study showed that influenza infection was an independent risk factor for invasive pulmonary aspergillosis (IPA) 4 . |
T15 | 683-804 | Sentence | denotes | Although influenza-associated IPA is associated with high mortality and morbidity, its pathogenesis is not well known 3 . |
T16 | 805-917 | Sentence | denotes | Direct immunomodulation and the use of drugs, such as oseltamivir and corticosteroids, may play a role 5 , 6 . |
T17 | 918-929 | Sentence | denotes | Wang et al. |
T18 | 930-1072 | Sentence | denotes | 2 reported a patient with severe acute respiratory syndrome (SARS), who died of aspergillosis after prolonged treatment with corticosteroids. |
T19 | 1073-1086 | Sentence | denotes | Blaize et al. |
T20 | 1087-1109 | Sentence | denotes | 7 and Antinori et al. |
T21 | 1110-1301 | Sentence | denotes | 8 reported fatal cases of IPA in immunocompetent patients with severe COVID-19, whose bronchoalveolar aspirate grew Aspergillus fumigatus and had a positive serum galactomannan (GM) antigen. |
T22 | 1302-1317 | Sentence | denotes | Antinori et al. |
T23 | 1318-1446 | Sentence | denotes | 8 evidenced the pathological pulmonary alterations postmortem and confirmed the infective Aspergillus via molecular techniques. |
T24 | 1447-1543 | Sentence | denotes | It is possible that aspergillosis could predispose patients with COVID-19 to clinical worsening. |
T25 | 1544-1864 | Sentence | denotes | Therefore, testing for the presence of Aspergillus spp in lower respiratory secretions and GM (not routinely positive in peripheral blood) in patients with COVID-19 in the intensive care unit (ICU) should be considered to allow timely treatment and avoid potential immunosuppression with the use of medications 5 , 6 . |
T26 | 1865-2037 | Sentence | denotes | However, conducting a bronchoscopy in patients with COVID-19 is relatively contraindicated due to the biological risk and clinical deterioration caused by the procedure 9 . |
T27 | 2038-2155 | Sentence | denotes | Lung biopsy, which might also be considered a gold standard diagnosis method, is also impractical in such a scenario. |
T28 | 2156-2249 | Sentence | denotes | Latin America seems to be the most recent COVID-19 epicenter, after Asia, Europe, and the US. |
T29 | 2250-2352 | Sentence | denotes | In Manaus, in the Brazilian Amazon, more than 2,000 deaths were officially reported in April/May 2020. |
T30 | 2354-2365 | Sentence | denotes | CASE REPORT |
T31 | 2366-2628 | Sentence | denotes | A 71-year-old male patient with prior history of hypertension, type II diabetes mellitus, and chronic kidney disease was admitted to the Hospital e Pronto-Socorro Delphina Rinaldi Abdel Aziz, a referral unit for the treatment of patients with COVID-19 in Manaus. |
T32 | 2629-2741 | Sentence | denotes | The patient was transferred from another hospital, where he had already been diagnosed with COVID-19 by RT-qPCR. |
T33 | 2742-2926 | Sentence | denotes | Upon admission into the ICU, he was placed under orotracheal intubation, received high-dose vasoactive drugs, was hemodynamically unstable, and presented cyanosis and cold extremities. |
T34 | 2927-3181 | Sentence | denotes | He was administered high-flow norepinephrine (1.41 µg/kg/min) and placed on invasive mechanical ventilation under aspiration of an orotracheal tube with high parameters (positive end-expiratory pressure [PEEP] 8/FiO2 60%/respiratory rate 26; volume 360). |
T35 | 3182-3211 | Sentence | denotes | The PaO2/FiO2 ratio was 86.6. |
T36 | 3212-3471 | Sentence | denotes | The patient received oseltamivir (75 mg twice daily) and chloroquine (450 mg twice on the first day) via a nasoenteral tube, IV azithromycin (500 mg/day), IV ceftriaxone (2g/day), IV furosemide (20mg TID), and prophylactic subcutaneous enoxaparin (40 mg/day). |
T37 | 3472-3506 | Sentence | denotes | No corticosteroid drugs were used. |
T38 | 3507-3624 | Sentence | denotes | Laboratory parameters showed increased urea (360.7 mg/dL), creatinine (8.46 mg/dL), and C-reactive protein (12 mg/L). |
T39 | 3625-3720 | Sentence | denotes | Normal values were seen for potassium and sodium (5.24 mmol/L; and 136.8 mmol/L, respectively). |
T40 | 3721-3867 | Sentence | denotes | Leukocytes 6,530/µL, platelets 285x109/µL, hemoglobin 11.2 g/dL, hematocrit 34.5%, neutrophilia (84%), and lymphopenia (12,8%) were also observed. |
T41 | 3868-3949 | Sentence | denotes | Chest x-rays showed infiltrate and nodular consolidation in the right lower lobe. |
T42 | 3950-3975 | Sentence | denotes | No CT scan was performed. |
T43 | 3976-4024 | Sentence | denotes | Blood culture was negative for bacterial growth. |
T44 | 4025-4178 | Sentence | denotes | On day three, following admission, the patient progressed with hemodynamic worsening and refractory shock, with irreversible hypotension and bradycardia. |
T45 | 4179-4205 | Sentence | denotes | He died the following day. |
T46 | 4206-4494 | Sentence | denotes | The autopsy was authorized by legal representatives (an informed consent form was signed), as the patient was enrolled prior to death in the CloroCovid-19 Study (ClinicalTrials.gov Identifier: NCT04323527, approved by the Brazilian National Ethics Review Board CAAE 30152620.1.0000.0005). |
T47 | 4495-4597 | Sentence | denotes | An autopsy was performed in the same hospital by trained technicians and under strict biosafety rules. |
T48 | 4598-4684 | Sentence | denotes | Macroscopically, the lung showed focal areas of consolidation in the right lower lobe. |
T49 | 4685-4995 | Sentence | denotes | Microscopic visualization of the lung showed the presence of clearly defined Aspergillus structures, including hyphae and fungal spores, and a well-defined Aspergillus head with phialides, conidia, and spores, as well as bronchopneumonia, fibrin thrombi occluding an artery, and squamous metaplasia (Figure 1). |
T50 | 4996-5073 | Sentence | denotes | The stored peripheral blood tested positive for the GM antigen (index 4.290). |
T51 | 5074-5241 | Sentence | denotes | Since the diagnosis was made postmortem, and aspergillosis was not considered antemortem, no sputum was collected for fungus culture and no antifungal drugs were used. |
T52 | 5242-5251 | Sentence | denotes | FIGURE 1: |
T53 | 5253-5280 | Sentence | denotes | Histopathology of the lung. |
T54 | 5281-5283 | Sentence | denotes | A. |
T55 | 5284-5340 | Sentence | denotes | Numerous hyphae and fungal spores shown by H&E staining. |
T56 | 5341-5419 | Sentence | denotes | Microscopic cavitation surrounded by numerous hypahes and fungal spores (40x). |
T57 | 5420-5422 | Sentence | denotes | B. |
T58 | 5423-5547 | Sentence | denotes | Well-defined Aspergillus head, allowing the visualization of phialides and conidia, with numerous fungal spores (PAS, 400x). |
T59 | 5548-5550 | Sentence | denotes | C. |
T60 | 5551-5771 | Sentence | denotes | Well-defined aspergillary structure showing conidiophore, aspergillary vesicle, phialides, and conidia, as well as several hyphae of regular diameter, some with septations and dichotomous branches (Gomori-Grocott, 400x). |
T61 | 5772-5774 | Sentence | denotes | D. |
T62 | 5775-5839 | Sentence | denotes | Bronchopneumonia with alveoli filled by neutrophils (H&E, 400x). |
T63 | 5840-5842 | Sentence | denotes | E. |
T64 | 5843-5904 | Sentence | denotes | Fibrin thrombi occluding a medium-sized artery (H&E, 400x) F. |
T65 | 5905-5966 | Sentence | denotes | Squamous metaplasia in alveolar epithelial cells (H&E, 400x). |
T66 | 5967-6055 | Sentence | denotes | The histopathological finding of Aspergillus spp was confirmed by nucleotide sequencing. |
T67 | 6056-6248 | Sentence | denotes | The internal transcribed spacer 1 (ITS1) and ITS2 regions and the 5.8S ribosomal DNA (rDNA) were amplified by polymerase chain reaction using the universal primers ITS1 and ITS4, as described. |
T68 | 6249-6395 | Sentence | denotes | 10 Sequencing was performed using the BigDye® Terminator v3.1 Cycle Sequencing (Applied Biosystems) and the above primers on an individual basis. |
T69 | 6396-6560 | Sentence | denotes | Only the best sequences were used to perform contig assembly and conduct comparative analysis with the GenBank database using the Basic Local Alignment Search Tool. |
T70 | 6561-6614 | Sentence | denotes | The best hit returns were Aspergillus penicillioides. |
T71 | 6615-6696 | Sentence | denotes | The sequence was submitted to GenBank and received the accession number MT582426. |
T72 | 6698-6708 | Sentence | denotes | DISCUSSION |
T73 | 6709-6897 | Sentence | denotes | Our report illustrates the importance of considering IPA in patients with underlying severe COVID-19, who show no clear clinical impairment related to IPA throughout their hospitalization. |
T74 | 6898-7051 | Sentence | denotes | In this case, the patient was likely immunologically compromised due to his underlying conditions (Type II diabetes mellitus and chronic kidney disease). |
T75 | 7052-7290 | Sentence | denotes | This case underscores the need to investigate this neglected disease and allow for early tracing with antifungal treatment; however, it is necessary to consider the risks posed by the bronchoscopy that must be performed for the diagnosis. |
T76 | 7291-7306 | Sentence | denotes | Antinori et al. |
T77 | 7307-7607 | Sentence | denotes | 8 assessed the postmortem lung examination of a patient with IPA and COVID-19, in which IPA was characterized by bronchial wall ulceration associated with multiple spots of necrotizing pneumonia, and the residual lung parenchyma displayed a pattern of acute lung injury with diffuse alveolar damage. |
T78 | 7608-7787 | Sentence | denotes | In addition to the presence of bronchopneumonia, we distinctly show fungi (hyphae and conidia) within blood vessels, the hallmark of the invasive disease triggered by this fungus. |
T79 | 7788-7937 | Sentence | denotes | The presence of GM in bronchoalveolar lavage is a useful marker, but this procedure is not performed in many COVID-19 patients for biosafety reasons. |
T80 | 7938-8158 | Sentence | denotes | However, the identification of this antigen in peripheral blood, a test that is usually negative, is seemingly a reliable marker of invasive disease, especially in our case, in which the invasion of vessels was observed. |
T81 | 8159-8405 | Sentence | denotes | In addition, it is important to consider that the use of medications, such as oseltamivir, which is preemptively prescribed for influenza infection, may potentially block host neuraminidase, thus increasing patient susceptibility to IPA 5 , 6 . |
T82 | 8406-8528 | Sentence | denotes | The use of corticosteroids, which is still a matter of debate in COVID-19 treatment, may also facilitate invasive disease. |
T83 | 8529-8637 | Sentence | denotes | Therefore, we recommend caution in the use of corticosteroids and oseltamivir to treat SARS-CoV-2 infection. |
T84 | 8638-8740 | Sentence | denotes | Meanwhile, chloroquine has been proposed as a drug with antifungal and immune response properties 11 . |
T85 | 8741-8924 | Sentence | denotes | As the patient clinical status was already critical upon his arrival and he died three days after hospitalization, the possibility of a hospital-acquired fungal infection is unlikely. |
T86 | 8925-9119 | Sentence | denotes | It is possible that aspergillosis could predispose patients with COVID-19 to clinical worsening, and it is therefore necessary to further assess this two-way interaction between both infections. |
T87 | 9120-9256 | Sentence | denotes | A. penicillioides is a xerophilic species occurring in dry habitats and in house dust; it is responsible for human and animal allergies. |
T88 | 9257-9375 | Sentence | denotes | Dry oxygen supplementation intended to prevent aerosolization could explain the infection caused by this pathogen 12 . |
T89 | 9376-9481 | Sentence | denotes | To the best of our knowledge, this is the fourth clinical report on A. penicillioides clinical infection. |
T90 | 9482-9636 | Sentence | denotes | The other three are classified as keratitis, disseminated disease in a child with cystic fibrosis, and central nervous system arteritis 13 , 14 , 15 . |
T91 | 9637-9748 | Sentence | denotes | No information is available on the antifungal sensitivity of this species or the frequency of invasive disease. |
T92 | 9749-9848 | Sentence | denotes | In conclusion, we report a case of IPA in a patient with severe pneumonia associated with COVID-19. |
T93 | 9849-10051 | Sentence | denotes | Using a gold standard method (histopathology) in our case series, the frequency of IPA was lower, as compared to that of cases published elsewhere; possible overestimation might be due to contamination. |
T94 | 10052-10245 | Sentence | denotes | In our case, no CT imaging of the lung, sequential GM, or culture for fungus was performed, thus reinforcing the role of autopsies as a form of postmortem surveillance of such a severe disease. |
T95 | 10246-10449 | Sentence | denotes | As the outbreak of COVID-19 continues to spread around the world, further reports are needed to assess the occurrence and frequency of IPA in severe SARS-CoV-2 infections, and their clinical interaction. |
T96 | 10450-10622 | Sentence | denotes | These studies are needed to assess the incidence of IPA and define at-risk populations, thus offering a strategy for diagnosis, prophylaxis, and timely clinical management. |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T6 | 133-142 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
T7 | 147-153 | Phenotype | denotes | sepsis | http://purl.obolibrary.org/obo/HP_0100806 |
T8 | 212-232 | Phenotype | denotes | respiratory distress | http://purl.obolibrary.org/obo/HP_0002098 |
T9 | 469-488 | Phenotype | denotes | respiratory failure | http://purl.obolibrary.org/obo/HP_0002878 |
T10 | 518-527 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
T11 | 640-672 | Phenotype | denotes | invasive pulmonary aspergillosis | http://purl.obolibrary.org/obo/HP_0020103 |
T12 | 674-677 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
T13 | 713-716 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
T14 | 1137-1140 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
T15 | 2415-2427 | Phenotype | denotes | hypertension | http://purl.obolibrary.org/obo/HP_0000822 |
T16 | 2429-2454 | Phenotype | denotes | type II diabetes mellitus | http://purl.obolibrary.org/obo/HP_0005978 |
T17 | 2460-2482 | Phenotype | denotes | chronic kidney disease | http://purl.obolibrary.org/obo/HP_0012622 |
T18 | 2896-2904 | Phenotype | denotes | cyanosis | http://purl.obolibrary.org/obo/HP_0000961 |
T19 | 3041-3051 | Phenotype | denotes | aspiration | http://purl.obolibrary.org/obo/HP_0002835 |
T20 | 3804-3816 | Phenotype | denotes | neutrophilia | http://purl.obolibrary.org/obo/HP_0011897 |
T21 | 3828-3839 | Phenotype | denotes | lymphopenia | http://purl.obolibrary.org/obo/HP_0001888 |
T22 | 4125-4130 | Phenotype | denotes | shock | http://purl.obolibrary.org/obo/HP_0031273 |
T23 | 4150-4161 | Phenotype | denotes | hypotension | http://purl.obolibrary.org/obo/HP_0002615 |
T24 | 4166-4177 | Phenotype | denotes | bradycardia | http://purl.obolibrary.org/obo/HP_0001662 |
T25 | 6762-6765 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
T26 | 6860-6863 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
T27 | 6997-7022 | Phenotype | denotes | Type II diabetes mellitus | http://purl.obolibrary.org/obo/HP_0005978 |
T28 | 7027-7049 | Phenotype | denotes | chronic kidney disease | http://purl.obolibrary.org/obo/HP_0012622 |
T29 | 7369-7372 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
T30 | 7396-7399 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
T31 | 7493-7502 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
T32 | 7560-7577 | Phenotype | denotes | acute lung injury | http://www.orpha.net/ORDO/Orphanet_178320 |
T33 | 7583-7606 | Phenotype | denotes | diffuse alveolar damage | http://purl.obolibrary.org/obo/HP_0033006 |
T34 | 8392-8395 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
T35 | 9516-9525 | Phenotype | denotes | keratitis | http://purl.obolibrary.org/obo/HP_0000491 |
T36 | 9608-9617 | Phenotype | denotes | arteritis | http://purl.obolibrary.org/obo/HP_0012089 |
T37 | 9784-9787 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
T38 | 9813-9822 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
T39 | 9932-9935 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
T40 | 10381-10384 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
T41 | 10388-10416 | Phenotype | denotes | severe SARS-CoV-2 infections | http://purl.obolibrary.org/obo/HP_0033141 |
T42 | 10502-10505 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
32638890-12890854-134289058 | 349-350 | 12890854 | denotes | 2 |
32638890-30299367-134289059 | 528-529 | 30299367 | denotes | 3 |
32638890-30076119-134289060 | 679-680 | 30076119 | denotes | 4 |
32638890-30299367-134289061 | 801-802 | 30299367 | denotes | 3 |
32638890-29325970-134289062 | 908-909 | 29325970 | denotes | 5 |
32638890-12890854-134289063 | 930-931 | 12890854 | denotes | 2 |
32638890-32470620-134289064 | 1110-1111 | 32470620 | denotes | 8 |
32638890-32470620-134289065 | 1318-1319 | 32470620 | denotes | 8 |
32638890-29325970-134289066 | 1855-1856 | 29325970 | denotes | 5 |
32638890-20392915-134289067 | 6249-6251 | 20392915 | denotes | 10 |
32638890-32470620-134289068 | 7307-7308 | 32470620 | denotes | 8 |
32638890-29325970-134289069 | 8396-8397 | 29325970 | denotes | 5 |
32638890-23482646-134289070 | 8736-8738 | 23482646 | denotes | 11 |
32638890-28440960-134289071 | 9371-9373 | 28440960 | denotes | 12 |
32638890-26579953-134289072 | 9618-9620 | 26579953 | denotes | 13 |
32638890-31667056-134289073 | 9632-9634 | 31667056 | denotes | 15 |
LitCovid-PMC-OGER-BB
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16 | 13-21 | SP_7 | denotes | COVID-19 |
T17 | 212-223 | UBERON:0001004 | denotes | respiratory |
T18 | 249-254 | NCBITaxon:10239 | denotes | viral |
T19 | 275-285 | SP_7 | denotes | SARS-CoV-2 |
T20 | 469-480 | UBERON:0001004 | denotes | respiratory |
T21 | 649-658 | UBERON:0002048 | denotes | pulmonary |
T22 | 844-849 | CHEBI:23888;CHEBI:23888 | denotes | drugs |
T23 | 859-870 | CHEBI:7798;CHEBI:7798 | denotes | oseltamivir |
T24 | 875-890 | CHEBI:50858;CHEBI:50858 | denotes | corticosteroids |
T25 | 970-981 | UBERON:0001004 | denotes | respiratory |
T26 | 992-996 | SP_10 | denotes | SARS |
T27 | 1003-1007 | GO:0016265 | denotes | died |
T28 | 1056-1071 | CHEBI:50858;CHEBI:50858 | denotes | corticosteroids |
T29 | 1181-1189 | SP_7 | denotes | COVID-19 |
T30 | 1222-1226 | GO:0040007 | denotes | grew |
T31 | 1227-1248 | NCBITaxon:746128 | denotes | Aspergillus fumigatus |
T32 | 1268-1273 | UBERON:0001977 | denotes | serum |
T33 | 1274-1287 | CHEBI:27680;CHEBI:27680 | denotes | galactomannan |
T34 | 1293-1300 | CHEBI:59132;CHEBI:59132 | denotes | antigen |
T35 | 1348-1357 | UBERON:0002048 | denotes | pulmonary |
T36 | 1370-1380 | GO:0016265 | denotes | postmortem |
T37 | 1512-1520 | SP_7 | denotes | COVID-19 |
T38 | 1583-1594 | NCBITaxon:5052 | denotes | Aspergillus |
T39 | 1608-1619 | UBERON:0001004 | denotes | respiratory |
T40 | 1676-1681 | UBERON:0000178 | denotes | blood |
T41 | 1700-1708 | SP_7 | denotes | COVID-19 |
T42 | 1726-1735 | UBERON:0007221 | denotes | care unit |
T43 | 1917-1925 | SP_7 | denotes | COVID-19 |
T44 | 2038-2042 | UBERON:0002048 | denotes | Lung |
T45 | 2198-2206 | SP_7 | denotes | COVID-19 |
T46 | 2302-2308 | GO:0016265 | denotes | deaths |
T47 | 2468-2474 | UBERON:0002113 | denotes | kidney |
T48 | 2609-2617 | SP_7 | denotes | COVID-19 |
T49 | 2721-2729 | SP_7 | denotes | COVID-19 |
T50 | 2791-2802 | UBERON:0006060 | denotes | orotracheal |
T51 | 2845-2850 | CHEBI:23888;CHEBI:23888 | denotes | drugs |
T52 | 3070-3074 | UBERON:0000025 | denotes | tube |
T53 | 3139-3143 | CHEBI:16526;CHEBI:16526 | denotes | FiO2 |
T54 | 3148-3159 | UBERON:0001004 | denotes | respiratory |
T55 | 3233-3244 | CHEBI:7798;CHEBI:7798 | denotes | oseltamivir |
T56 | 3269-3280 | CHEBI:3638;CHEBI:3638;DG_10 | denotes | chloroquine |
T57 | 3340-3352 | CHEBI:2955;CHEBI:2955;DG_6 | denotes | azithromycin |
T58 | 3370-3381 | CHEBI:29007;CHEBI:29007 | denotes | ceftriaxone |
T59 | 3395-3405 | CHEBI:47426;CHEBI:47426 | denotes | furosemide |
T60 | 3475-3489 | CHEBI:50858;CHEBI:50858 | denotes | corticosteroid |
T61 | 3490-3495 | CHEBI:23888;CHEBI:23888 | denotes | drugs |
T62 | 3546-3550 | CHEBI:16199;CHEBI:16199 | denotes | urea |
T63 | 3566-3576 | CHEBI:16737;CHEBI:16737 | denotes | creatinine |
T64 | 3595-3613 | PR:000005897 | denotes | C-reactive protein |
T65 | 3721-3731 | CL:0000738 | denotes | Leukocytes |
T66 | 3742-3751 | CL:0000233 | denotes | platelets |
T67 | 3804-3816 | CL:0000775 | denotes | neutrophilia |
T68 | 3944-3948 | UBERON:0002171 | denotes | lobe |
T69 | 3976-3981 | UBERON:0000178 | denotes | Blood |
T70 | 4007-4016 | NCBITaxon:2 | denotes | bacterial |
T71 | 4182-4186 | GO:0016265 | denotes | died |
T72 | 4334-4339 | GO:0016265 | denotes | death |
T73 | 4619-4623 | UBERON:0002048 | denotes | lung |
T74 | 4673-4678 | UBERON:0000101 | denotes | lower |
T75 | 4679-4683 | UBERON:0002171 | denotes | lobe |
T76 | 4718-4722 | UBERON:0002048 | denotes | lung |
T77 | 4762-4773 | NCBITaxon:5052 | denotes | Aspergillus |
T78 | 4807-4813 | NCBITaxon:4751 | denotes | fungal |
T79 | 4853-4857 | UBERON:0000033 | denotes | head |
T80 | 4924-4930 | UBERON:0010210;CHEBI:5054;CHEBI:5054 | denotes | fibrin |
T81 | 4931-4938 | UBERON:0010210 | denotes | thrombi |
T82 | 4952-4958 | UBERON:0001637 | denotes | artery |
T83 | 5018-5023 | UBERON:0000178 | denotes | blood |
T84 | 5051-5058 | CHEBI:59132;CHEBI:59132 | denotes | antigen |
T85 | 5103-5113 | GO:0016265 | denotes | postmortem |
T86 | 5152-5162 | GO:0016265 | denotes | antemortem |
T87 | 5167-5173 | UBERON:0007311 | denotes | sputum |
T88 | 5192-5198 | NCBITaxon:4751 | denotes | fungus |
T89 | 5214-5224 | CHEBI:35718;CHEBI:35718 | denotes | antifungal |
T90 | 5225-5230 | CHEBI:86327;CHEBI:86327 | denotes | drugs |
T91 | 5275-5279 | UBERON:0002048 | denotes | lung |
T92 | 5304-5310 | NCBITaxon:4751 | denotes | fungal |
T93 | 5327-5328 | CHEBI:51686;CHEBI:51686 | denotes | H |
T94 | 5399-5405 | NCBITaxon:4751 | denotes | fungal |
T95 | 5436-5447 | NCBITaxon:5052 | denotes | Aspergillus |
T96 | 5448-5452 | UBERON:0000033 | denotes | head |
T97 | 5521-5527 | NCBITaxon:4751 | denotes | fungal |
T98 | 5797-5804 | UBERON:0003215 | denotes | alveoli |
T99 | 5815-5826 | CL:0000775 | denotes | neutrophils |
T100 | 5828-5829 | CHEBI:51686;CHEBI:51686 | denotes | H |
T101 | 5843-5849 | CHEBI:5054;CHEBI:5054;UBERON:0010210 | denotes | Fibrin |
T102 | 5850-5857 | UBERON:0010210 | denotes | thrombi |
T103 | 5883-5889 | UBERON:0001637 | denotes | artery |
T104 | 5891-5892 | CHEBI:51686;CHEBI:51686 | denotes | H |
T105 | 5928-5936 | UBERON:0003215;CL:0000322 | denotes | alveolar |
T106 | 5937-5947 | CL:0000322;UBERON:0000483 | denotes | epithelial |
T107 | 5948-5953 | CL:0000322 | denotes | cells |
T108 | 5955-5956 | CHEBI:51686;CHEBI:51686 | denotes | H |
T127 | 6000-6011 | NCBITaxon:5052 | denotes | Aspergillus |
T128 | 6127-6136 | GO:0005840 | denotes | ribosomal |
T129 | 6212-6219 | SO:0000112 | denotes | primers |
T130 | 6364-6371 | SO:0000112 | denotes | primers |
T131 | 6441-6447 | SO:0000149 | denotes | contig |
T132 | 6587-6613 | NCBITaxon:41959 | denotes | Aspergillus penicillioides |
T133 | 6801-6809 | SP_7 | denotes | COVID-19 |
T134 | 7035-7041 | UBERON:0002113 | denotes | kidney |
T135 | 7323-7333 | GO:0016265 | denotes | postmortem |
T136 | 7334-7338 | UBERON:0002048 | denotes | lung |
T137 | 7377-7385 | SP_7 | denotes | COVID-19 |
T138 | 7421-7430 | UBERON:0004242 | denotes | bronchial |
T139 | 7431-7435 | UBERON:0000060 | denotes | wall |
T140 | 7521-7536 | UBERON:0008946 | denotes | lung parenchyma |
T141 | 7566-7570 | UBERON:0002048 | denotes | lung |
T142 | 7591-7599 | UBERON:0003215 | denotes | alveolar |
T143 | 7676-7681 | NCBITaxon:4751 | denotes | fungi |
T144 | 7710-7723 | UBERON:0001981 | denotes | blood vessels |
T145 | 7780-7786 | NCBITaxon:4751 | denotes | fungus |
T146 | 7810-7825 | UBERON:0002186 | denotes | bronchoalveolar |
T147 | 7897-7905 | SP_7 | denotes | COVID-19 |
T148 | 7974-7981 | CHEBI:59132;CHEBI:59132 | denotes | antigen |
T149 | 7996-8001 | UBERON:0000178 | denotes | blood |
T150 | 8137-8144 | UBERON:0000055 | denotes | vessels |
T151 | 8237-8248 | CHEBI:7798;CHEBI:7798 | denotes | oseltamivir |
T152 | 8417-8432 | CHEBI:50858;CHEBI:50858 | denotes | corticosteroids |
T153 | 8471-8479 | SP_7 | denotes | COVID-19 |
T154 | 8575-8590 | CHEBI:50858;CHEBI:50858 | denotes | corticosteroids |
T155 | 8595-8606 | CHEBI:7798;CHEBI:7798 | denotes | oseltamivir |
T156 | 8616-8626 | SP_7 | denotes | SARS-CoV-2 |
T157 | 8649-8660 | CHEBI:3638;DG_10;CHEBI:3638 | denotes | chloroquine |
T158 | 8684-8688 | CHEBI:23888;CHEBI:23888 | denotes | drug |
T159 | 8709-8715 | UBERON:0002405;GO:0006955 | denotes | immune |
T160 | 8716-8724 | GO:0006955 | denotes | response |
T161 | 8817-8821 | GO:0016265 | denotes | died |
T162 | 8895-8901 | NCBITaxon:4751 | denotes | fungal |
T163 | 8990-8998 | SP_7 | denotes | COVID-19 |
T164 | 9154-9161 | NCBITaxon:species | denotes | species |
T165 | 9229-9234 | SP_6;NCBITaxon:9606 | denotes | human |
T166 | 9239-9245 | NCBITaxon:33208 | denotes | animal |
T167 | 9444-9445 | NCBITaxon:8296 | denotes | A |
T168 | 9585-9607 | UBERON:0001017 | denotes | central nervous system |
T169 | 9703-9710 | NCBITaxon:species | denotes | species |
T170 | 9839-9847 | SP_7 | denotes | COVID-19 |
T171 | 10086-10090 | UBERON:0002048 | denotes | lung |
T172 | 10122-10128 | NCBITaxon:4751 | denotes | fungus |
T173 | 10196-10206 | GO:0016265 | denotes | postmortem |
T174 | 10207-10219 | GO:0065007 | denotes | surveillance |
T175 | 10265-10273 | SP_7 | denotes | COVID-19 |
T176 | 10395-10405 | SP_7 | denotes | SARS-CoV-2 |
T10975 | 13-21 | SP_7 | denotes | COVID-19 |
T9972 | 212-223 | UBERON:0001004 | denotes | respiratory |
T44879 | 249-254 | NCBITaxon:10239 | denotes | viral |
T10889 | 275-285 | SP_7 | denotes | SARS-CoV-2 |
T56159 | 469-480 | UBERON:0001004 | denotes | respiratory |
T87696 | 649-658 | UBERON:0002048 | denotes | pulmonary |
T74450 | 844-849 | CHEBI:23888;CHEBI:23888 | denotes | drugs |
T70529 | 859-870 | CHEBI:7798;CHEBI:7798 | denotes | oseltamivir |
T54454 | 875-890 | CHEBI:50858;CHEBI:50858 | denotes | corticosteroids |
T90991 | 970-981 | UBERON:0001004 | denotes | respiratory |
T80841 | 992-996 | SP_10 | denotes | SARS |
T15928 | 1003-1007 | GO:0016265 | denotes | died |
T2908 | 1056-1071 | CHEBI:50858;CHEBI:50858 | denotes | corticosteroids |
T17935 | 1181-1189 | SP_7 | denotes | COVID-19 |
T49431 | 1222-1226 | GO:0040007 | denotes | grew |
T73074 | 1227-1248 | NCBITaxon:746128 | denotes | Aspergillus fumigatus |
T55704 | 1268-1273 | UBERON:0001977 | denotes | serum |
T61728 | 1274-1287 | CHEBI:27680;CHEBI:27680 | denotes | galactomannan |
T66622 | 1293-1300 | CHEBI:59132;CHEBI:59132 | denotes | antigen |
T77392 | 1348-1357 | UBERON:0002048 | denotes | pulmonary |
T64062 | 1370-1380 | GO:0016265 | denotes | postmortem |
T85604 | 1512-1520 | SP_7 | denotes | COVID-19 |
T74035 | 1583-1594 | NCBITaxon:5052 | denotes | Aspergillus |
T644 | 1608-1619 | UBERON:0001004 | denotes | respiratory |
T47982 | 1676-1681 | UBERON:0000178 | denotes | blood |
T97836 | 1700-1708 | SP_7 | denotes | COVID-19 |
T31476 | 1726-1735 | UBERON:0007221 | denotes | care unit |
T4469 | 1917-1925 | SP_7 | denotes | COVID-19 |
T35848 | 2038-2042 | UBERON:0002048 | denotes | Lung |
T65233 | 2198-2206 | SP_7 | denotes | COVID-19 |
T63671 | 2302-2308 | GO:0016265 | denotes | deaths |
T98313 | 2468-2474 | UBERON:0002113 | denotes | kidney |
T14556 | 2609-2617 | SP_7 | denotes | COVID-19 |
T45329 | 2721-2729 | SP_7 | denotes | COVID-19 |
T62007 | 2791-2802 | UBERON:0006060 | denotes | orotracheal |
T81053 | 2845-2850 | CHEBI:23888;CHEBI:23888 | denotes | drugs |
T84418 | 3070-3074 | UBERON:0000025 | denotes | tube |
T13632 | 3139-3143 | CHEBI:16526;CHEBI:16526 | denotes | FiO2 |
T35862 | 3148-3159 | UBERON:0001004 | denotes | respiratory |
T24320 | 3233-3244 | CHEBI:7798;CHEBI:7798 | denotes | oseltamivir |
T83491 | 3269-3280 | CHEBI:3638;CHEBI:3638;DG_10 | denotes | chloroquine |
T9292 | 3340-3352 | CHEBI:2955;CHEBI:2955;DG_6 | denotes | azithromycin |
T19984 | 3370-3381 | CHEBI:29007;CHEBI:29007 | denotes | ceftriaxone |
T4490 | 3395-3405 | CHEBI:47426;CHEBI:47426 | denotes | furosemide |
T37947 | 3475-3489 | CHEBI:50858;CHEBI:50858 | denotes | corticosteroid |
T19256 | 3490-3495 | CHEBI:23888;CHEBI:23888 | denotes | drugs |
T6586 | 3546-3550 | CHEBI:16199;CHEBI:16199 | denotes | urea |
T20602 | 3566-3576 | CHEBI:16737;CHEBI:16737 | denotes | creatinine |
T37535 | 3595-3613 | PR:000005897 | denotes | C-reactive protein |
T59138 | 3721-3731 | CL:0000738 | denotes | Leukocytes |
T94991 | 3742-3751 | CL:0000233 | denotes | platelets |
T9825 | 3804-3816 | CL:0000775 | denotes | neutrophilia |
T4481 | 3944-3948 | UBERON:0002171 | denotes | lobe |
T6767 | 3976-3981 | UBERON:0000178 | denotes | Blood |
T5667 | 4007-4016 | NCBITaxon:2 | denotes | bacterial |
T1728 | 4182-4186 | GO:0016265 | denotes | died |
T27792 | 4334-4339 | GO:0016265 | denotes | death |
T45015 | 4619-4623 | UBERON:0002048 | denotes | lung |
T95141 | 4673-4678 | UBERON:0000101 | denotes | lower |
T63510 | 4679-4683 | UBERON:0002171 | denotes | lobe |
T50592 | 4718-4722 | UBERON:0002048 | denotes | lung |
T54529 | 4762-4773 | NCBITaxon:5052 | denotes | Aspergillus |
T53412 | 4807-4813 | NCBITaxon:4751 | denotes | fungal |
T84391 | 4853-4857 | UBERON:0000033 | denotes | head |
T7647 | 4924-4930 | UBERON:0010210;CHEBI:5054;CHEBI:5054 | denotes | fibrin |
T64013 | 4931-4938 | UBERON:0010210 | denotes | thrombi |
T81261 | 4952-4958 | UBERON:0001637 | denotes | artery |
T18084 | 5018-5023 | UBERON:0000178 | denotes | blood |
T70655 | 5051-5058 | CHEBI:59132;CHEBI:59132 | denotes | antigen |
T71653 | 5103-5113 | GO:0016265 | denotes | postmortem |
T7484 | 5152-5162 | GO:0016265 | denotes | antemortem |
T96965 | 5167-5173 | UBERON:0007311 | denotes | sputum |
T78632 | 5192-5198 | NCBITaxon:4751 | denotes | fungus |
T68516 | 5214-5224 | CHEBI:35718;CHEBI:35718 | denotes | antifungal |
T92277 | 5225-5230 | CHEBI:86327;CHEBI:86327 | denotes | drugs |
T81207 | 5275-5279 | UBERON:0002048 | denotes | lung |
T65437 | 5304-5310 | NCBITaxon:4751 | denotes | fungal |
T92241 | 5327-5328 | CHEBI:51686;CHEBI:51686 | denotes | H |
T64480 | 5399-5405 | NCBITaxon:4751 | denotes | fungal |
T74480 | 5436-5447 | NCBITaxon:5052 | denotes | Aspergillus |
T31521 | 5448-5452 | UBERON:0000033 | denotes | head |
T29491 | 5521-5527 | NCBITaxon:4751 | denotes | fungal |
T83684 | 5797-5804 | UBERON:0003215 | denotes | alveoli |
T62000 | 5815-5826 | CL:0000775 | denotes | neutrophils |
T43627 | 5828-5829 | CHEBI:51686;CHEBI:51686 | denotes | H |
T39112 | 5843-5849 | CHEBI:5054;CHEBI:5054;UBERON:0010210 | denotes | Fibrin |
T37990 | 5850-5857 | UBERON:0010210 | denotes | thrombi |
T93077 | 5883-5889 | UBERON:0001637 | denotes | artery |
T41475 | 5891-5892 | CHEBI:51686;CHEBI:51686 | denotes | H |
T29535 | 5928-5936 | UBERON:0003215;CL:0000322 | denotes | alveolar |
T32471 | 5937-5947 | CL:0000322;UBERON:0000483 | denotes | epithelial |
T46776 | 5948-5953 | CL:0000322 | denotes | cells |
T9064 | 5955-5956 | CHEBI:51686;CHEBI:51686 | denotes | H |
T358 | 6000-6011 | NCBITaxon:5052 | denotes | Aspergillus |
T55757 | 6127-6136 | GO:0005840 | denotes | ribosomal |
T8859 | 6212-6219 | SO:0000112 | denotes | primers |
T66811 | 6364-6371 | SO:0000112 | denotes | primers |
T27374 | 6441-6447 | SO:0000149 | denotes | contig |
T19455 | 6587-6613 | NCBITaxon:41959 | denotes | Aspergillus penicillioides |
T82423 | 6801-6809 | SP_7 | denotes | COVID-19 |
T34071 | 7035-7041 | UBERON:0002113 | denotes | kidney |
T61699 | 7323-7333 | GO:0016265 | denotes | postmortem |
T93941 | 7334-7338 | UBERON:0002048 | denotes | lung |
T73256 | 7377-7385 | SP_7 | denotes | COVID-19 |
T83346 | 7421-7430 | UBERON:0004242 | denotes | bronchial |
T74144 | 7431-7435 | UBERON:0000060 | denotes | wall |
T44419 | 7521-7536 | UBERON:0008946 | denotes | lung parenchyma |
T67181 | 7566-7570 | UBERON:0002048 | denotes | lung |
T79335 | 7591-7599 | UBERON:0003215 | denotes | alveolar |
T86622 | 7676-7681 | NCBITaxon:4751 | denotes | fungi |
T73261 | 7710-7723 | UBERON:0001981 | denotes | blood vessels |
T66563 | 7780-7786 | NCBITaxon:4751 | denotes | fungus |
T54734 | 7810-7825 | UBERON:0002186 | denotes | bronchoalveolar |
T1262 | 7897-7905 | SP_7 | denotes | COVID-19 |
T38840 | 7974-7981 | CHEBI:59132;CHEBI:59132 | denotes | antigen |
T52237 | 7996-8001 | UBERON:0000178 | denotes | blood |
T44074 | 8137-8144 | UBERON:0000055 | denotes | vessels |
T51918 | 8237-8248 | CHEBI:7798;CHEBI:7798 | denotes | oseltamivir |
T80887 | 8417-8432 | CHEBI:50858;CHEBI:50858 | denotes | corticosteroids |
T94411 | 8471-8479 | SP_7 | denotes | COVID-19 |
T32486 | 8575-8590 | CHEBI:50858;CHEBI:50858 | denotes | corticosteroids |
T69774 | 8595-8606 | CHEBI:7798;CHEBI:7798 | denotes | oseltamivir |
T10050 | 8616-8626 | SP_7 | denotes | SARS-CoV-2 |
T11082 | 8649-8660 | CHEBI:3638;DG_10;CHEBI:3638 | denotes | chloroquine |
T74372 | 8684-8688 | CHEBI:23888;CHEBI:23888 | denotes | drug |
T87907 | 8709-8715 | UBERON:0002405;GO:0006955 | denotes | immune |
T30095 | 8716-8724 | GO:0006955 | denotes | response |
T9576 | 8817-8821 | GO:0016265 | denotes | died |
T74942 | 8895-8901 | NCBITaxon:4751 | denotes | fungal |
T51897 | 8990-8998 | SP_7 | denotes | COVID-19 |
T28441 | 9154-9161 | NCBITaxon:species | denotes | species |
T32148 | 9229-9234 | SP_6;NCBITaxon:9606 | denotes | human |
T62069 | 9239-9245 | NCBITaxon:33208 | denotes | animal |
T83688 | 9444-9445 | NCBITaxon:8296 | denotes | A |
T72912 | 9585-9607 | UBERON:0001017 | denotes | central nervous system |
T85719 | 9703-9710 | NCBITaxon:species | denotes | species |
T94369 | 9839-9847 | SP_7 | denotes | COVID-19 |
T82530 | 10086-10090 | UBERON:0002048 | denotes | lung |
T25732 | 10122-10128 | NCBITaxon:4751 | denotes | fungus |
T91787 | 10196-10206 | GO:0016265 | denotes | postmortem |
T81843 | 10207-10219 | GO:0065007 | denotes | surveillance |
T28979 | 10265-10273 | SP_7 | denotes | COVID-19 |
T62679 | 10395-10405 | SP_7 | denotes | SARS-CoV-2 |