PMC:7341831 / 5303-5946
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T16 | 21-25 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T17 | 69-85 | Body_part | denotes | right lower lobe | http://purl.org/sig/ont/fma/fma7337 |
| T18 | 120-124 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T19 | 255-259 | Body_part | denotes | head | http://purl.org/sig/ont/fma/fma7154 |
| T20 | 354-360 | Body_part | denotes | artery | http://purl.org/sig/ont/fma/fma50720 |
| T21 | 420-425 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T22 | 569-575 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T11 | 21-25 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T12 | 81-85 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
| T13 | 120-124 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T14 | 255-259 | Body_part | denotes | head | http://purl.obolibrary.org/obo/UBERON_0000033 |
| T15 | 354-360 | Body_part | denotes | artery | http://purl.obolibrary.org/obo/UBERON_0001637 |
| T16 | 420-425 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T17 | 569-575 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 162 | 164-175 | Species | denotes | Aspergillus | Tax:746128 |
| 163 | 243-254 | Species | denotes | Aspergillus | Tax:746128 |
| 164 | 450-452 | Chemical | denotes | GM | MESH:C012990 |
| 165 | 308-324 | Disease | denotes | bronchopneumonia | MESH:D001996 |
| 166 | 366-385 | Disease | denotes | squamous metaplasia | MESH:D008679 |
| 167 | 521-534 | Disease | denotes | aspergillosis | MESH:D001228 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T50 | 308-324 | Disease | denotes | bronchopneumonia | http://purl.obolibrary.org/obo/MONDO_0005682 |
| T51 | 521-534 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T33 | 21-25 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T34 | 21-25 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T35 | 120-124 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T36 | 120-124 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T37 | 228-229 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T38 | 255-259 | http://purl.obolibrary.org/obo/UBERON_0000033 | denotes | head |
| T39 | 255-259 | http://www.ebi.ac.uk/efo/EFO_0000964 | denotes | head |
| T40 | 354-360 | http://purl.obolibrary.org/obo/UBERON_0001637 | denotes | artery |
| T41 | 354-360 | http://www.ebi.ac.uk/efo/EFO_0000814 | denotes | artery |
| T42 | 420-425 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T43 | 420-425 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T44 | 426-432 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T52 | 450-452 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
| T54 | 453-460 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
| T55 | 616-632 | Chemical | denotes | antifungal drugs | http://purl.obolibrary.org/obo/CHEBI_35718|http://purl.obolibrary.org/obo/CHEBI_86327 |
| T57 | 627-632 | Chemical | denotes | drugs | http://purl.obolibrary.org/obo/CHEBI_23888 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5 | 375-385 | http://purl.obolibrary.org/obo/GO_0036074 | denotes | metaplasia |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T5 | 450-452 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T48 | 0-86 | Sentence | denotes | Macroscopically, the lung showed focal areas of consolidation in the right lower lobe. |
| T49 | 87-397 | Sentence | denotes | Microscopic visualization of the lung showed the presence of clearly defined Aspergillus structures, including hyphae and fungal spores, and a well-defined Aspergillus head with phialides, conidia, and spores, as well as bronchopneumonia, fibrin thrombi occluding an artery, and squamous metaplasia (Figure 1). |
| T50 | 398-475 | Sentence | denotes | The stored peripheral blood tested positive for the GM antigen (index 4.290). |
| T51 | 476-643 | Sentence | denotes | Since the diagnosis was made postmortem, and aspergillosis was not considered antemortem, no sputum was collected for fungus culture and no antifungal drugs were used. |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T73 | 21-25 | UBERON:0002048 | denotes | lung |
| T74 | 75-80 | UBERON:0000101 | denotes | lower |
| T75 | 81-85 | UBERON:0002171 | denotes | lobe |
| T76 | 120-124 | UBERON:0002048 | denotes | lung |
| T77 | 164-175 | NCBITaxon:5052 | denotes | Aspergillus |
| T78 | 209-215 | NCBITaxon:4751 | denotes | fungal |
| T79 | 255-259 | UBERON:0000033 | denotes | head |
| T80 | 326-332 | UBERON:0010210;CHEBI:5054;CHEBI:5054 | denotes | fibrin |
| T81 | 333-340 | UBERON:0010210 | denotes | thrombi |
| T82 | 354-360 | UBERON:0001637 | denotes | artery |
| T83 | 420-425 | UBERON:0000178 | denotes | blood |
| T84 | 453-460 | CHEBI:59132;CHEBI:59132 | denotes | antigen |
| T85 | 505-515 | GO:0016265 | denotes | postmortem |
| T86 | 554-564 | GO:0016265 | denotes | antemortem |
| T87 | 569-575 | UBERON:0007311 | denotes | sputum |
| T88 | 594-600 | NCBITaxon:4751 | denotes | fungus |
| T89 | 616-626 | CHEBI:35718;CHEBI:35718 | denotes | antifungal |
| T90 | 627-632 | CHEBI:86327;CHEBI:86327 | denotes | drugs |
| T45015 | 21-25 | UBERON:0002048 | denotes | lung |
| T95141 | 75-80 | UBERON:0000101 | denotes | lower |
| T63510 | 81-85 | UBERON:0002171 | denotes | lobe |
| T50592 | 120-124 | UBERON:0002048 | denotes | lung |
| T54529 | 164-175 | NCBITaxon:5052 | denotes | Aspergillus |
| T53412 | 209-215 | NCBITaxon:4751 | denotes | fungal |
| T84391 | 255-259 | UBERON:0000033 | denotes | head |
| T7647 | 326-332 | UBERON:0010210;CHEBI:5054;CHEBI:5054 | denotes | fibrin |
| T64013 | 333-340 | UBERON:0010210 | denotes | thrombi |
| T81261 | 354-360 | UBERON:0001637 | denotes | artery |
| T18084 | 420-425 | UBERON:0000178 | denotes | blood |
| T70655 | 453-460 | CHEBI:59132;CHEBI:59132 | denotes | antigen |
| T71653 | 505-515 | GO:0016265 | denotes | postmortem |
| T7484 | 554-564 | GO:0016265 | denotes | antemortem |
| T96965 | 569-575 | UBERON:0007311 | denotes | sputum |
| T78632 | 594-600 | NCBITaxon:4751 | denotes | fungus |
| T68516 | 616-626 | CHEBI:35718;CHEBI:35718 | denotes | antifungal |
| T92277 | 627-632 | CHEBI:86327;CHEBI:86327 | denotes | drugs |