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PMC:7341831 / 142-703 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 282-287 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T2 387-397 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 282-287 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
13 78-85 Species denotes patient Tax:9606
14 166-173 Species denotes patient Tax:9606
15 333-359 Species denotes Aspergillus penicillioides Tax:41959
16 288-301 Chemical denotes galactomannan MESH:C012990
17 34-66 Disease denotes invasive pulmonary aspergillosis MESH:D055744
18 98-106 Disease denotes COVID-19 MESH:C000657245
19 121-129 Disease denotes COVID-19 MESH:C000657245
20 360-369 Disease denotes infection MESH:D007239
21 505-526 Disease denotes SARS-CoV-2 infections MESH:C000657245

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 53-66 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T4 98-106 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 121-129 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T6 360-369 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T7 505-513 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T8 505-509 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T9 516-526 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 76-77 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 282-287 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T3 282-287 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T4 310-317 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 68-71 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T3 187-201 Chemical denotes antimicrobials http://purl.obolibrary.org/obo/CHEBI_33281
T4 288-301 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T5 302-309 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T6 328-331 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T8 387-397 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T9 498-501 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T1 288-301 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T4 0-107 Sentence denotes We present postmortem evidence of invasive pulmonary aspergillosis (IPA) in a patient with severe COVID-19.
T5 108-161 Sentence denotes Autopsies of COVID-19 confirmed cases were performed.
T6 162-251 Sentence denotes The patient died despite antimicrobials, mechanical ventilation, and vasopressor support.
T7 252-332 Sentence denotes Histopathology and peripheral blood galactomannan antigen testing confirmed IPA.
T8 333-428 Sentence denotes Aspergillus penicillioides infection was confirmed by nucleotide sequencing and BLAST analysis.
T9 429-561 Sentence denotes Further reports are needed to assess the occurrence and frequency of IPA in SARS-CoV-2 infections, and how they interact clinically.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 34-66 Phenotype denotes invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T3 68-71 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T4 328-331 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T5 498-501 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T5 11-21 GO:0016265 denotes postmortem
T6 43-52 UBERON:0002048 denotes pulmonary
T7 98-106 SP_7 denotes COVID-19
T8 121-129 SP_7 denotes COVID-19
T9 174-178 GO:0016265 denotes died
T10 187-201 CHEBI:35718;CHEBI:35718 denotes antimicrobials
T11 282-287 UBERON:0000178 denotes blood
T12 288-301 CHEBI:27680;CHEBI:27680 denotes galactomannan
T13 302-309 CHEBI:59132;CHEBI:59132 denotes antigen
T14 333-359 NCBITaxon:41959 denotes Aspergillus penicillioides
T15 505-515 SP_7 denotes SARS-CoV-2
T89862 11-21 GO:0016265 denotes postmortem
T90830 43-52 UBERON:0002048 denotes pulmonary
T1066 98-106 SP_7 denotes COVID-19
T80195 121-129 SP_7 denotes COVID-19
T6817 174-178 GO:0016265 denotes died
T2550 187-201 CHEBI:35718;CHEBI:35718 denotes antimicrobials
T8260 282-287 UBERON:0000178 denotes blood
T28696 288-301 CHEBI:27680;CHEBI:27680 denotes galactomannan
T49528 302-309 CHEBI:59132;CHEBI:59132 denotes antigen
T54553 333-359 NCBITaxon:41959 denotes Aspergillus penicillioides
T55893 505-515 SP_7 denotes SARS-CoV-2