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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 424-429 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T2 529-539 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T3 1973-1978 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T4 2381-2386 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T5 2743-2747 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T6 3173-3179 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T7 3619-3630 Body_part denotes extremities http://purl.org/sig/ont/fma/fma7182
T8 3662-3676 Body_part denotes norepinephrine http://purl.org/sig/ont/fma/fma61799
T9 4311-4318 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T10 4426-4436 Body_part denotes Leukocytes http://purl.org/sig/ont/fma/fma62852
T11 4447-4456 Body_part denotes platelets http://purl.org/sig/ont/fma/fma62851
T12 4469-4479 Body_part denotes hemoglobin http://purl.org/sig/ont/fma/fma62293
T13 4573-4578 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T14 4637-4653 Body_part denotes right lower lobe http://purl.org/sig/ont/fma/fma7337
T15 4681-4686 Body_part denotes Blood http://purl.org/sig/ont/fma/fma9670
T16 5324-5328 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T17 5372-5388 Body_part denotes right lower lobe http://purl.org/sig/ont/fma/fma7337
T18 5423-5427 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T19 5558-5562 Body_part denotes head http://purl.org/sig/ont/fma/fma7154
T20 5657-5663 Body_part denotes artery http://purl.org/sig/ont/fma/fma50720
T21 5723-5728 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T22 5872-5878 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T23 5980-5984 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T24 6153-6157 Body_part denotes head http://purl.org/sig/ont/fma/fma7154
T25 6520-6531 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T26 6588-6594 Body_part denotes artery http://purl.org/sig/ont/fma/fma50720
T27 6633-6658 Body_part denotes alveolar epithelial cells http://purl.org/sig/ont/fma/fma62499
T28 6653-6658 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T29 6738-6748 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T30 6832-6841 Body_part denotes ribosomal http://purl.org/sig/ont/fma/fma66867
T31 6842-6845 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T32 7740-7746 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T33 8039-8043 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T34 8126-8140 Body_part denotes bronchial wall http://purl.org/sig/ont/fma/fma13121|http://purl.org/sig/ont/fma/fma67480
T36 8226-8241 Body_part denotes lung parenchyma http://purl.org/sig/ont/fma/fma27360
T37 8271-8275 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T38 8296-8304 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T39 8415-8428 Body_part denotes blood vessels http://purl.org/sig/ont/fma/fma63183
T40 8415-8420 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T41 8701-8706 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T42 10290-10312 Body_part denotes central nervous system http://purl.org/sig/ont/fma/fma55675
T43 10791-10795 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 424-429 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T2 1973-1978 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T3 2381-2386 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T4 2743-2747 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T5 3173-3179 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T6 3775-3779 Body_part denotes tube http://purl.obolibrary.org/obo/UBERON_0000025
T7 4036-4040 Body_part denotes tube http://purl.obolibrary.org/obo/UBERON_0000025
T8 4573-4578 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T9 4649-4653 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T10 4681-4686 Body_part denotes Blood http://purl.obolibrary.org/obo/UBERON_0000178
T11 5324-5328 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T12 5384-5388 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T13 5423-5427 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T14 5558-5562 Body_part denotes head http://purl.obolibrary.org/obo/UBERON_0000033
T15 5657-5663 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T16 5723-5728 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T17 5872-5878 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T18 5980-5984 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T19 6153-6157 Body_part denotes head http://purl.obolibrary.org/obo/UBERON_0000033
T20 6588-6594 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T21 7740-7746 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T22 8039-8043 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T23 8226-8241 Body_part denotes lung parenchyma http://purl.obolibrary.org/obo/UBERON_0008946
T24 8226-8230 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T25 8231-8241 Body_part denotes parenchyma http://purl.obolibrary.org/obo/UBERON_0000353
T26 8271-8275 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T27 8415-8428 Body_part denotes blood vessels http://purl.obolibrary.org/obo/UBERON_0001981
T28 8415-8420 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T29 8421-8428 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T30 8701-8706 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T31 8842-8849 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T32 10290-10312 Body_part denotes central nervous system http://purl.obolibrary.org/obo/UBERON_0001017
T33 10298-10312 Body_part denotes nervous system http://purl.obolibrary.org/obo/UBERON_0001016
T34 10791-10795 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 10-42 Disease denotes Invasive Pulmonary Aspergillosis MESH:D055744
3 47-55 Disease denotes COVID-19 MESH:C000657245
13 220-227 Species denotes patient Tax:9606
14 308-315 Species denotes patient Tax:9606
15 475-501 Species denotes Aspergillus penicillioides Tax:41959
16 430-443 Chemical denotes galactomannan MESH:C012990
17 176-208 Disease denotes invasive pulmonary aspergillosis MESH:D055744
18 240-248 Disease denotes COVID-19 MESH:C000657245
19 263-271 Disease denotes COVID-19 MESH:C000657245
20 502-511 Disease denotes infection MESH:D007239
21 647-668 Disease denotes SARS-CoV-2 infections MESH:C000657245
37 813-821 Species denotes patients Tax:9606
38 897-905 Species denotes Patients Tax:9606
39 980-990 Species denotes SARS-CoV-2 Tax:2697049
40 1118-1126 Species denotes patients Tax:9606
41 718-726 Disease denotes COVID-19 MESH:C000657245
42 838-847 Disease denotes pneumonia MESH:D011014
43 852-858 Disease denotes sepsis MESH:D018805
44 911-946 Disease denotes acute respiratory distress syndrome MESH:D012128
45 954-970 Disease denotes viral infections MESH:D001102
46 1040-1053 Disease denotes aspergillosis MESH:D001228
47 1058-1080 Disease denotes Invasive aspergillosis MESH:D055744
48 1174-1193 Disease denotes respiratory failure MESH:D012131
49 1223-1232 Disease denotes pneumonia MESH:D011014
50 1300-1309 Disease denotes infection MESH:D007239
51 1345-1377 Disease denotes invasive pulmonary aspergillosis MESH:D055744
67 1649-1656 Species denotes patient Tax:9606
68 1865-1873 Species denotes patients Tax:9606
69 1932-1953 Species denotes Aspergillus fumigatus Tax:746128
70 2203-2211 Species denotes patients Tax:9606
71 2114-2125 Species denotes Aspergillus Tax:746128
72 1564-1575 Chemical denotes oseltamivir MESH:D053139
73 1979-1992 Chemical denotes galactomannan MESH:C012990
74 1994-1996 Chemical denotes GM MESH:C012990
75 1446-1455 Disease denotes mortality MESH:D003643
76 1662-1695 Disease denotes severe acute respiratory syndrome MESH:D045169
77 1697-1701 Disease denotes SARS MESH:D045169
78 1716-1729 Disease denotes aspergillosis MESH:D001228
79 1886-1894 Disease denotes COVID-19 MESH:C000657245
80 2172-2185 Disease denotes aspergillosis MESH:D001228
81 2217-2225 Disease denotes COVID-19 MESH:C000657245
88 2391-2399 Species denotes patients Tax:9606
89 2608-2616 Species denotes patients Tax:9606
90 2288-2299 Species denotes Aspergillus Tax:746128
91 2340-2342 Chemical denotes GM MESH:C012990
92 2405-2413 Disease denotes COVID-19 MESH:C000657245
93 2622-2630 Disease denotes COVID-19 MESH:C000657245
96 2903-2911 Disease denotes COVID-19 MESH:C000657245
97 3007-3013 Disease denotes deaths MESH:D003643
115 3090-3097 Species denotes patient Tax:9606
116 3300-3308 Species denotes patients Tax:9606
117 3338-3345 Species denotes patient Tax:9606
118 3921-3928 Species denotes patient Tax:9606
119 3662-3676 Chemical denotes norepinephrine MESH:D009638
120 3938-3949 Chemical denotes oseltamivir MESH:D053139
121 3974-3985 Chemical denotes chloroquine MESH:D002738
122 4045-4057 Chemical denotes azithromycin MESH:D017963
123 4075-4086 Chemical denotes ceftriaxone MESH:D002443
124 4100-4110 Chemical denotes furosemide MESH:D005665
125 4153-4163 Chemical denotes enoxaparin MESH:D017984
126 3120-3132 Disease denotes hypertension MESH:D006973
127 3134-3159 Disease denotes type II diabetes mellitus MESH:D003924
128 3165-3187 Disease denotes chronic kidney disease MESH:D051436
129 3314-3322 Disease denotes COVID-19 MESH:C000657245
130 3426-3434 Disease denotes COVID-19 MESH:C000657245
131 3601-3630 Disease denotes cyanosis and cold extremities MESH:D003490
139 4300-4318 Gene denotes C-reactive protein Gene:1401
140 4251-4255 Chemical denotes urea MESH:D014508
141 4271-4281 Chemical denotes creatinine MESH:D003404
142 4358-4367 Chemical denotes potassium MESH:D011188
143 4372-4378 Chemical denotes sodium MESH:D012964
144 4509-4521 Disease denotes neutrophilia MESH:C563010
145 4533-4544 Disease denotes lymphopenia MESH:D008231
151 4769-4776 Species denotes patient Tax:9606
152 5009-5016 Species denotes patient Tax:9606
153 4855-4866 Disease denotes hypotension MESH:D007022
154 4871-4882 Disease denotes bradycardia MESH:D001919
155 5039-5044 Disease denotes death MESH:D003643
162 5467-5478 Species denotes Aspergillus Tax:746128
163 5546-5557 Species denotes Aspergillus Tax:746128
164 5753-5755 Chemical denotes GM MESH:C012990
165 5611-5627 Disease denotes bronchopneumonia MESH:D001996
166 5669-5688 Disease denotes squamous metaplasia MESH:D008679
167 5824-5837 Disease denotes aspergillosis MESH:D001228
172 6141-6152 Species denotes Aspergillus Tax:746128
173 6032-6035 Chemical denotes H&E MESH:D006371
174 6480-6496 Disease denotes Bronchopneumonia MESH:D001996
175 6610-6629 Disease denotes Squamous metaplasia MESH:D008679
178 7292-7318 Species denotes Aspergillus penicillioides Tax:41959
179 6705-6716 Species denotes Aspergillus Tax:746128
196 7474-7482 Species denotes patients Tax:9606
197 7621-7628 Species denotes patient Tax:9606
198 8061-8068 Species denotes patient Tax:9606
199 8611-8619 Species denotes patients Tax:9606
200 8509-8511 Chemical denotes GM MESH:C012990
201 7506-7514 Disease denotes COVID-19 MESH:C000657245
202 7702-7727 Disease denotes Type II diabetes mellitus MESH:D003924
203 7732-7754 Disease denotes chronic kidney disease MESH:D051436
204 8082-8090 Disease denotes COVID-19 MESH:C000657245
205 8186-8207 Disease denotes necrotizing pneumonia MESH:D011014
206 8271-8282 Disease denotes lung injury MESH:D055370
207 8296-8311 Disease denotes alveolar damage MESH:D055370
208 8344-8360 Disease denotes bronchopneumonia MESH:D001996
209 8434-8466 Disease denotes hallmark of the invasive disease MESH:D009361
210 8602-8610 Disease denotes COVID-19 MESH:C000657245
211 8775-8791 Disease denotes invasive disease MESH:D009361
227 9040-9053 Gene denotes neuraminidase Gene:4758
228 9071-9078 Species denotes patient Tax:9606
229 9453-9460 Species denotes patient Tax:9606
230 9681-9689 Species denotes patients Tax:9606
231 8942-8953 Chemical denotes oseltamivir MESH:D053139
232 9300-9311 Chemical denotes oseltamivir MESH:D053139
233 9354-9365 Chemical denotes chloroquine MESH:D002738
234 9002-9011 Disease denotes infection MESH:D007239
235 9176-9184 Disease denotes COVID-19 MESH:C000657245
236 9216-9232 Disease denotes invasive disease MESH:D009361
237 9321-9341 Disease denotes SARS-CoV-2 infection MESH:C000657245
238 9600-9616 Disease denotes fungal infection MESH:D009181
239 9650-9663 Disease denotes aspergillosis MESH:D001228
240 9695-9703 Disease denotes COVID-19 MESH:C000657245
241 9813-9823 Disease denotes infections MESH:D007239
255 9825-9842 Species denotes A. penicillioides Tax:41959
256 9934-9939 Species denotes human Tax:9606
257 10149-10166 Species denotes A. penicillioides Tax:41959
258 10258-10263 Species denotes child Tax:9606
259 9966-9972 Chemical denotes oxygen MESH:D010100
260 9880-9892 Disease denotes dry habitats MESH:D015352
261 10042-10051 Disease denotes infection MESH:D007239
262 10176-10185 Disease denotes infection MESH:D007239
263 10221-10230 Disease denotes keratitis MESH:D007634
264 10232-10252 Disease denotes disseminated disease MESH:D009103
265 10269-10284 Disease denotes cystic fibrosis MESH:D003550
266 10290-10322 Disease denotes central nervous system arteritis MESH:D020943
267 10436-10452 Disease denotes invasive disease MESH:D009361
274 10498-10505 Species denotes patient Tax:9606
275 10808-10810 Chemical denotes GM MESH:C012990
276 10518-10527 Disease denotes pneumonia MESH:D011014
277 10544-10552 Disease denotes COVID-19 MESH:C000657245
278 10970-10978 Disease denotes COVID-19 MESH:C000657245
279 11100-11121 Disease denotes SARS-CoV-2 infections MESH:C000657245

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 29-42 Disease denotes Aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T2 47-55 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 195-208 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T4 240-248 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 263-271 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T6 502-511 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T7 647-655 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T8 647-651 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T9 658-668 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T10 718-726 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T11 772-775 Disease denotes flu http://purl.obolibrary.org/obo/MONDO_0005812
T12 838-847 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T13 911-946 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T14 917-946 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T15 954-970 Disease denotes viral infections http://purl.obolibrary.org/obo/MONDO_0005108
T16 980-988 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T17 980-984 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T18 1040-1053 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T19 1058-1080 Disease denotes Invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T20 1067-1080 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T21 1168-1193 Disease denotes acute respiratory failure http://purl.obolibrary.org/obo/MONDO_0001208|http://purl.obolibrary.org/obo/MONDO_0021113
T23 1205-1214 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T24 1223-1232 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T25 1290-1309 Disease denotes influenza infection http://purl.obolibrary.org/obo/MONDO_0005812
T26 1300-1309 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T27 1364-1377 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T28 1397-1406 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T29 1662-1695 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T30 1697-1701 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T31 1716-1729 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T32 1886-1894 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T33 2172-2185 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T34 2217-2225 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T35 2405-2413 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T36 2622-2630 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T37 2903-2911 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T38 3120-3132 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T39 3134-3159 Disease denotes type II diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005148
T40 3142-3150 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T41 3165-3187 Disease denotes chronic kidney disease http://purl.obolibrary.org/obo/MONDO_0005300
T42 3173-3187 Disease denotes kidney disease http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240
T44 3314-3322 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T45 3391-3393 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T46 3426-3434 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T47 3476-3478 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T48 4533-4544 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T49 4855-4866 Disease denotes hypotension http://purl.obolibrary.org/obo/MONDO_0005468
T50 5611-5627 Disease denotes bronchopneumonia http://purl.obolibrary.org/obo/MONDO_0005682
T51 5824-5837 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T52 6241-6244 Disease denotes PAS http://purl.obolibrary.org/obo/MONDO_0004277
T53 6480-6496 Disease denotes Bronchopneumonia http://purl.obolibrary.org/obo/MONDO_0005682
T54 7506-7514 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T55 7702-7727 Disease denotes Type II diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005148
T56 7710-7727 Disease denotes diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005015
T57 7732-7754 Disease denotes chronic kidney disease http://purl.obolibrary.org/obo/MONDO_0005300
T58 7740-7754 Disease denotes kidney disease http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240
T60 8082-8090 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T61 8141-8151 Disease denotes ulceration http://purl.obolibrary.org/obo/MONDO_0043839
T62 8198-8207 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T63 8265-8282 Disease denotes acute lung injury http://purl.obolibrary.org/obo/MONDO_0006502|http://purl.obolibrary.org/obo/MONDO_0015796
T65 8276-8282 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T66 8344-8360 Disease denotes bronchopneumonia http://purl.obolibrary.org/obo/MONDO_0005682
T67 8602-8610 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T68 8992-9011 Disease denotes influenza infection http://purl.obolibrary.org/obo/MONDO_0005812
T69 9002-9011 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T70 9176-9184 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T71 9321-9329 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T72 9321-9325 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T73 9332-9341 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T74 9519-9521 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T75 9600-9616 Disease denotes fungal infection http://purl.obolibrary.org/obo/MONDO_0002041
T76 9607-9616 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T77 9650-9663 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T78 9695-9703 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T79 9813-9823 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T80 10042-10051 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T81 10167-10185 Disease denotes clinical infection http://purl.obolibrary.org/obo/MONDO_0005550
T82 10221-10230 Disease denotes keratitis http://purl.obolibrary.org/obo/MONDO_0003085
T83 10269-10284 Disease denotes cystic fibrosis http://purl.obolibrary.org/obo/MONDO_0009061
T84 10313-10322 Disease denotes arteritis http://purl.obolibrary.org/obo/MONDO_0043494
T85 10518-10527 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T86 10544-10552 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T87 10970-10978 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T88 11100-11108 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T89 11100-11104 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T90 11111-11121 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T91 11529-11532 Disease denotes FGN http://purl.obolibrary.org/obo/MONDO_0019991

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 218-219 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 424-429 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T3 424-429 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T4 452-459 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T5 1135-1136 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 1237-1238 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T7 1606-1607 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 1647-1648 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1962-1963 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 2260-2267 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T11 2381-2386 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T12 2381-2386 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T13 2590-2591 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 2743-2747 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T15 2743-2747 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T16 2787-2788 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 2849-2850 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 3071-3072 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T19 3073-3075 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T20 3085-3089 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T21 3085-3089 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T22 3173-3179 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T23 3173-3179 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T24 3173-3179 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T25 3263-3264 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 3619-3630 http://www.ebi.ac.uk/efo/EFO_0000876 denotes extremities
T27 3775-3779 http://purl.obolibrary.org/obo/UBERON_0000025 denotes tube
T28 4022-4023 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 4036-4040 http://purl.obolibrary.org/obo/UBERON_0000025 denotes tube
T30 4573-4578 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T31 4681-4686 http://purl.obolibrary.org/obo/UBERON_0000178 denotes Blood
T32 4681-4686 http://www.ebi.ac.uk/efo/EFO_0000296 denotes Blood
T33 5324-5328 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T34 5324-5328 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T35 5423-5427 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T36 5423-5427 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T37 5531-5532 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 5558-5562 http://purl.obolibrary.org/obo/UBERON_0000033 denotes head
T39 5558-5562 http://www.ebi.ac.uk/efo/EFO_0000964 denotes head
T40 5657-5663 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
T41 5657-5663 http://www.ebi.ac.uk/efo/EFO_0000814 denotes artery
T42 5723-5728 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T43 5723-5728 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T44 5729-5735 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T45 5980-5984 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T46 5980-5984 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T47 5986-5987 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T48 6125-6126 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T49 6153-6157 http://purl.obolibrary.org/obo/UBERON_0000033 denotes head
T50 6153-6157 http://www.ebi.ac.uk/efo/EFO_0000964 denotes head
T51 6573-6574 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 6588-6594 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
T53 6588-6594 http://www.ebi.ac.uk/efo/EFO_0000814 denotes artery
T54 6642-6652 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T55 6653-6658 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T56 7740-7746 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T57 7740-7746 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T58 7740-7746 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T59 8039-8043 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T60 8039-8043 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T61 8059-8060 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 8226-8230 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T63 8226-8230 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T64 8252-8253 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 8271-8275 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T66 8271-8275 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T67 8415-8428 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T68 8415-8428 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessels
T69 8541-8542 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T70 8701-8706 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T71 8701-8706 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T72 8708-8709 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T73 8710-8714 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T74 8754-8755 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T75 8842-8849 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels
T76 9154-9155 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T77 9366-9369 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T78 9387-9388 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T79 9441-9443 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T80 9580-9581 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T81 9825-9826 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T82 9846-9847 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T83 9934-9939 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T84 9944-9950 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T85 10149-10150 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T86 10256-10257 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T87 10290-10312 http://purl.obolibrary.org/obo/UBERON_0001017 denotes central nervous system
T88 10290-10312 http://www.ebi.ac.uk/efo/EFO_0000302 denotes central nervous system
T89 10290-10312 http://www.ebi.ac.uk/efo/EFO_0000908 denotes central nervous system
T90 10479-10480 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T91 10496-10497 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T92 10560-10561 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T93 10791-10795 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T94 10791-10795 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T95 10891-10892 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T96 10933-10934 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T97 11257-11258 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T98 11534-11536 http://purl.obolibrary.org/obo/CLO_0001547 denotes AP

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 210-213 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T3 329-343 Chemical denotes antimicrobials http://purl.obolibrary.org/obo/CHEBI_33281
T4 430-443 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T5 444-451 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T6 470-473 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T8 529-539 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T9 640-643 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T11 1379-1382 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T13 1418-1421 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T15 1549-1554 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T16 1564-1575 Chemical denotes oseltamivir http://purl.obolibrary.org/obo/CHEBI_7798
T17 1580-1595 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T18 1761-1776 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T19 1842-1845 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T21 1979-1992 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T22 1994-1996 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T24 1998-2005 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T25 2340-2342 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T27 2789-2793 Chemical denotes gold http://purl.obolibrary.org/obo/CHEBI_29287|http://purl.obolibrary.org/obo/CHEBI_30050
T29 3085-3089 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T30 3139-3141 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T31 3550-3555 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T32 3662-3676 Chemical denotes norepinephrine http://purl.obolibrary.org/obo/CHEBI_18357|http://purl.obolibrary.org/obo/CHEBI_33569
T34 3836-3840 Chemical denotes PEEP http://purl.obolibrary.org/obo/CHEBI_53359|http://purl.obolibrary.org/obo/CHEBI_60683
T36 3938-3949 Chemical denotes oseltamivir http://purl.obolibrary.org/obo/CHEBI_7798
T37 3974-3985 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T38 4042-4044 Chemical denotes IV http://purl.obolibrary.org/obo/CHEBI_74327
T39 4045-4057 Chemical denotes azithromycin http://purl.obolibrary.org/obo/CHEBI_2955
T40 4072-4074 Chemical denotes IV http://purl.obolibrary.org/obo/CHEBI_74327
T41 4075-4086 Chemical denotes ceftriaxone http://purl.obolibrary.org/obo/CHEBI_29007
T42 4097-4099 Chemical denotes IV http://purl.obolibrary.org/obo/CHEBI_74327
T43 4100-4110 Chemical denotes furosemide http://purl.obolibrary.org/obo/CHEBI_47426
T44 4180-4194 Chemical denotes corticosteroid http://purl.obolibrary.org/obo/CHEBI_50858
T45 4195-4200 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T46 4251-4255 Chemical denotes urea http://purl.obolibrary.org/obo/CHEBI_16199
T47 4271-4281 Chemical denotes creatinine http://purl.obolibrary.org/obo/CHEBI_16737
T48 4311-4318 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T49 4358-4367 Chemical denotes potassium http://purl.obolibrary.org/obo/CHEBI_26216
T50 4372-4378 Chemical denotes sodium http://purl.obolibrary.org/obo/CHEBI_26708
T51 4469-4479 Chemical denotes hemoglobin http://purl.obolibrary.org/obo/CHEBI_35143
T52 5753-5755 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T54 5756-5763 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T55 5919-5935 Chemical denotes antifungal drugs http://purl.obolibrary.org/obo/CHEBI_35718|http://purl.obolibrary.org/obo/CHEBI_86327
T57 5930-5935 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T58 6241-6244 Chemical denotes PAS http://purl.obolibrary.org/obo/CHEBI_27565
T59 6548-6554 Chemical denotes Fibrin http://purl.obolibrary.org/obo/CHEBI_5054
T60 6738-6748 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T61 6842-6845 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T62 7467-7470 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T64 7565-7568 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T66 7707-7709 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T67 7859-7869 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T68 8074-8077 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T70 8101-8104 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T72 8509-8511 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T74 8679-8686 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T75 8942-8953 Chemical denotes oseltamivir http://purl.obolibrary.org/obo/CHEBI_7798
T76 9097-9100 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T78 9122-9137 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T79 9280-9295 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T80 9300-9311 Chemical denotes oseltamivir http://purl.obolibrary.org/obo/CHEBI_7798
T81 9354-9365 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T82 9389-9393 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T83 9399-9409 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T84 9966-9972 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T85 10377-10387 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T86 10489-10492 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T88 10562-10566 Chemical denotes gold http://purl.obolibrary.org/obo/CHEBI_29287|http://purl.obolibrary.org/obo/CHEBI_30050
T90 10637-10640 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T92 10808-10810 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T94 11086-11089 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T96 11207-11210 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T98 11534-11536 Chemical denotes AP http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 954-970 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infections
T2 1475-1487 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T3 2325-2335 http://purl.obolibrary.org/obo/GO_0046903 denotes secretions
T4 4722-4728 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T5 5678-5688 http://purl.obolibrary.org/obo/GO_0036074 denotes metaplasia
T6 6417-6427 http://purl.obolibrary.org/obo/GO_0000917 denotes septations
T7 6619-6629 http://purl.obolibrary.org/obo/GO_0036074 denotes metaplasia
T8 9414-9429 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T1 430-443 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T2 1979-1992 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T3 1994-1996 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T4 2340-2342 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T5 5753-5755 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T6 8509-8511 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T7 10808-10810 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-122 Sentence denotes Confirmed Invasive Pulmonary Aspergillosis and COVID-19: the value of postmortem findings to support antemortem management
T2 124-132 Sentence denotes Abstract
T3 133-141 Sentence denotes Abstract
T4 142-249 Sentence denotes We present postmortem evidence of invasive pulmonary aspergillosis (IPA) in a patient with severe COVID-19.
T5 250-303 Sentence denotes Autopsies of COVID-19 confirmed cases were performed.
T6 304-393 Sentence denotes The patient died despite antimicrobials, mechanical ventilation, and vasopressor support.
T7 394-474 Sentence denotes Histopathology and peripheral blood galactomannan antigen testing confirmed IPA.
T8 475-570 Sentence denotes Aspergillus penicillioides infection was confirmed by nucleotide sequencing and BLAST analysis.
T9 571-703 Sentence denotes Further reports are needed to assess the occurrence and frequency of IPA in SARS-CoV-2 infections, and how they interact clinically.
T10 705-717 Sentence denotes INTRODUCTION
T11 718-896 Sentence denotes COVID-19 is characterized by asymptomatic and/or mild flu-like symptoms; however, about 20% of patients may progress to pneumonia and sepsis, thus requiring intensive support 1 .
T12 897-1057 Sentence denotes Patients with acute respiratory distress syndrome due to viral infections, such as SARS-CoV-2, are prone to secondary complications, including aspergillosis 2 .
T13 1058-1236 Sentence denotes Invasive aspergillosis is not uncommon in immunocompromised patients, and is a well-described complication in acute respiratory failure and severe influenza-related pneumonia 3 .
T14 1237-1387 Sentence denotes A retrospective multicenter cohort study showed that influenza infection was an independent risk factor for invasive pulmonary aspergillosis (IPA) 4 .
T15 1388-1509 Sentence denotes Although influenza-associated IPA is associated with high mortality and morbidity, its pathogenesis is not well known 3 .
T16 1510-1622 Sentence denotes Direct immunomodulation and the use of drugs, such as oseltamivir and corticosteroids, may play a role 5 , 6 .
T17 1623-1634 Sentence denotes Wang et al.
T18 1635-1777 Sentence denotes 2 reported a patient with severe acute respiratory syndrome (SARS), who died of aspergillosis after prolonged treatment with corticosteroids.
T19 1778-1791 Sentence denotes Blaize et al.
T20 1792-1814 Sentence denotes 7 and Antinori et al.
T21 1815-2006 Sentence denotes 8 reported fatal cases of IPA in immunocompetent patients with severe COVID-19, whose bronchoalveolar aspirate grew Aspergillus fumigatus and had a positive serum galactomannan (GM) antigen.
T22 2007-2022 Sentence denotes Antinori et al.
T23 2023-2151 Sentence denotes 8 evidenced the pathological pulmonary alterations postmortem and confirmed the infective Aspergillus via molecular techniques.
T24 2152-2248 Sentence denotes It is possible that aspergillosis could predispose patients with COVID-19 to clinical worsening.
T25 2249-2569 Sentence denotes Therefore, testing for the presence of Aspergillus spp in lower respiratory secretions and GM (not routinely positive in peripheral blood) in patients with COVID-19 in the intensive care unit (ICU) should be considered to allow timely treatment and avoid potential immunosuppression with the use of medications 5 , 6 .
T26 2570-2742 Sentence denotes However, conducting a bronchoscopy in patients with COVID-19 is relatively contraindicated due to the biological risk and clinical deterioration caused by the procedure 9 .
T27 2743-2860 Sentence denotes Lung biopsy, which might also be considered a gold standard diagnosis method, is also impractical in such a scenario.
T28 2861-2954 Sentence denotes Latin America seems to be the most recent COVID-19 epicenter, after Asia, Europe, and the US.
T29 2955-3057 Sentence denotes In Manaus, in the Brazilian Amazon, more than 2,000 deaths were officially reported in April/May 2020.
T30 3059-3070 Sentence denotes CASE REPORT
T31 3071-3333 Sentence denotes A 71-year-old male patient with prior history of hypertension, type II diabetes mellitus, and chronic kidney disease was admitted to the Hospital e Pronto-Socorro Delphina Rinaldi Abdel Aziz, a referral unit for the treatment of patients with COVID-19 in Manaus.
T32 3334-3446 Sentence denotes The patient was transferred from another hospital, where he had already been diagnosed with COVID-19 by RT-qPCR.
T33 3447-3631 Sentence denotes Upon admission into the ICU, he was placed under orotracheal intubation, received high-dose vasoactive drugs, was hemodynamically unstable, and presented cyanosis and cold extremities.
T34 3632-3886 Sentence denotes He was administered high-flow norepinephrine (1.41 µg/kg/min) and placed on invasive mechanical ventilation under aspiration of an orotracheal tube with high parameters (positive end-expiratory pressure [PEEP] 8/FiO2 60%/respiratory rate 26; volume 360).
T35 3887-3916 Sentence denotes The PaO2/FiO2 ratio was 86.6.
T36 3917-4176 Sentence denotes The patient received oseltamivir (75 mg twice daily) and chloroquine (450 mg twice on the first day) via a nasoenteral tube, IV azithromycin (500 mg/day), IV ceftriaxone (2g/day), IV furosemide (20mg TID), and prophylactic subcutaneous enoxaparin (40 mg/day).
T37 4177-4211 Sentence denotes No corticosteroid drugs were used.
T38 4212-4329 Sentence denotes Laboratory parameters showed increased urea (360.7 mg/dL), creatinine (8.46 mg/dL), and C-reactive protein (12 mg/L).
T39 4330-4425 Sentence denotes Normal values were seen for potassium and sodium (5.24 mmol/L; and 136.8 mmol/L, respectively).
T40 4426-4572 Sentence denotes Leukocytes 6,530/µL, platelets 285x109/µL, hemoglobin 11.2 g/dL, hematocrit 34.5%, neutrophilia (84%), and lymphopenia (12,8%) were also observed.
T41 4573-4654 Sentence denotes Chest x-rays showed infiltrate and nodular consolidation in the right lower lobe.
T42 4655-4680 Sentence denotes No CT scan was performed.
T43 4681-4729 Sentence denotes Blood culture was negative for bacterial growth.
T44 4730-4883 Sentence denotes On day three, following admission, the patient progressed with hemodynamic worsening and refractory shock, with irreversible hypotension and bradycardia.
T45 4884-4910 Sentence denotes He died the following day.
T46 4911-5199 Sentence denotes The autopsy was authorized by legal representatives (an informed consent form was signed), as the patient was enrolled prior to death in the CloroCovid-19 Study (ClinicalTrials.gov Identifier: NCT04323527, approved by the Brazilian National Ethics Review Board CAAE 30152620.1.0000.0005).
T47 5200-5302 Sentence denotes An autopsy was performed in the same hospital by trained technicians and under strict biosafety rules.
T48 5303-5389 Sentence denotes Macroscopically, the lung showed focal areas of consolidation in the right lower lobe.
T49 5390-5700 Sentence denotes Microscopic visualization of the lung showed the presence of clearly defined Aspergillus structures, including hyphae and fungal spores, and a well-defined Aspergillus head with phialides, conidia, and spores, as well as bronchopneumonia, fibrin thrombi occluding an artery, and squamous metaplasia (Figure 1).
T50 5701-5778 Sentence denotes The stored peripheral blood tested positive for the GM antigen (index 4.290).
T51 5779-5946 Sentence denotes Since the diagnosis was made postmortem, and aspergillosis was not considered antemortem, no sputum was collected for fungus culture and no antifungal drugs were used.
T52 5947-5956 Sentence denotes FIGURE 1:
T53 5958-5985 Sentence denotes Histopathology of the lung.
T54 5986-5988 Sentence denotes A.
T55 5989-6045 Sentence denotes Numerous hyphae and fungal spores shown by H&E staining.
T56 6046-6124 Sentence denotes Microscopic cavitation surrounded by numerous hypahes and fungal spores (40x).
T57 6125-6127 Sentence denotes B.
T58 6128-6252 Sentence denotes Well-defined Aspergillus head, allowing the visualization of phialides and conidia, with numerous fungal spores (PAS, 400x).
T59 6253-6255 Sentence denotes C.
T60 6256-6476 Sentence denotes Well-defined aspergillary structure showing conidiophore, aspergillary vesicle, phialides, and conidia, as well as several hyphae of regular diameter, some with septations and dichotomous branches (Gomori-Grocott, 400x).
T61 6477-6479 Sentence denotes D.
T62 6480-6544 Sentence denotes Bronchopneumonia with alveoli filled by neutrophils (H&E, 400x).
T63 6545-6547 Sentence denotes E.
T64 6548-6609 Sentence denotes Fibrin thrombi occluding a medium-sized artery (H&E, 400x) F.
T65 6610-6671 Sentence denotes Squamous metaplasia in alveolar epithelial cells (H&E, 400x).
T66 6672-6760 Sentence denotes The histopathological finding of Aspergillus spp was confirmed by nucleotide sequencing.
T67 6761-6953 Sentence denotes The internal transcribed spacer 1 (ITS1) and ITS2 regions and the 5.8S ribosomal DNA (rDNA) were amplified by polymerase chain reaction using the universal primers ITS1 and ITS4, as described.
T68 6954-7100 Sentence denotes 10 Sequencing was performed using the BigDye® Terminator v3.1 Cycle Sequencing (Applied Biosystems) and the above primers on an individual basis.
T69 7101-7265 Sentence denotes Only the best sequences were used to perform contig assembly and conduct comparative analysis with the GenBank database using the Basic Local Alignment Search Tool.
T70 7266-7319 Sentence denotes The best hit returns were Aspergillus penicillioides.
T71 7320-7401 Sentence denotes The sequence was submitted to GenBank and received the accession number MT582426.
T72 7403-7413 Sentence denotes DISCUSSION
T73 7414-7602 Sentence denotes Our report illustrates the importance of considering IPA in patients with underlying severe COVID-19, who show no clear clinical impairment related to IPA throughout their hospitalization.
T74 7603-7756 Sentence denotes In this case, the patient was likely immunologically compromised due to his underlying conditions (Type II diabetes mellitus and chronic kidney disease).
T75 7757-7995 Sentence denotes This case underscores the need to investigate this neglected disease and allow for early tracing with antifungal treatment; however, it is necessary to consider the risks posed by the bronchoscopy that must be performed for the diagnosis.
T76 7996-8011 Sentence denotes Antinori et al.
T77 8012-8312 Sentence denotes 8 assessed the postmortem lung examination of a patient with IPA and COVID-19, in which IPA was characterized by bronchial wall ulceration associated with multiple spots of necrotizing pneumonia, and the residual lung parenchyma displayed a pattern of acute lung injury with diffuse alveolar damage.
T78 8313-8492 Sentence denotes In addition to the presence of bronchopneumonia, we distinctly show fungi (hyphae and conidia) within blood vessels, the hallmark of the invasive disease triggered by this fungus.
T79 8493-8642 Sentence denotes The presence of GM in bronchoalveolar lavage is a useful marker, but this procedure is not performed in many COVID-19 patients for biosafety reasons.
T80 8643-8863 Sentence denotes However, the identification of this antigen in peripheral blood, a test that is usually negative, is seemingly a reliable marker of invasive disease, especially in our case, in which the invasion of vessels was observed.
T81 8864-9110 Sentence denotes In addition, it is important to consider that the use of medications, such as oseltamivir, which is preemptively prescribed for influenza infection, may potentially block host neuraminidase, thus increasing patient susceptibility to IPA 5 , 6 .
T82 9111-9233 Sentence denotes The use of corticosteroids, which is still a matter of debate in COVID-19 treatment, may also facilitate invasive disease.
T83 9234-9342 Sentence denotes Therefore, we recommend caution in the use of corticosteroids and oseltamivir to treat SARS-CoV-2 infection.
T84 9343-9445 Sentence denotes Meanwhile, chloroquine has been proposed as a drug with antifungal and immune response properties 11 .
T85 9446-9629 Sentence denotes As the patient clinical status was already critical upon his arrival and he died three days after hospitalization, the possibility of a hospital-acquired fungal infection is unlikely.
T86 9630-9824 Sentence denotes It is possible that aspergillosis could predispose patients with COVID-19 to clinical worsening, and it is therefore necessary to further assess this two-way interaction between both infections.
T87 9825-9961 Sentence denotes A. penicillioides is a xerophilic species occurring in dry habitats and in house dust; it is responsible for human and animal allergies.
T88 9962-10080 Sentence denotes Dry oxygen supplementation intended to prevent aerosolization could explain the infection caused by this pathogen 12 .
T89 10081-10186 Sentence denotes To the best of our knowledge, this is the fourth clinical report on A. penicillioides clinical infection.
T90 10187-10341 Sentence denotes The other three are classified as keratitis, disseminated disease in a child with cystic fibrosis, and central nervous system arteritis 13 , 14 , 15 .
T91 10342-10453 Sentence denotes No information is available on the antifungal sensitivity of this species or the frequency of invasive disease.
T92 10454-10553 Sentence denotes In conclusion, we report a case of IPA in a patient with severe pneumonia associated with COVID-19.
T93 10554-10756 Sentence denotes Using a gold standard method (histopathology) in our case series, the frequency of IPA was lower, as compared to that of cases published elsewhere; possible overestimation might be due to contamination.
T94 10757-10950 Sentence denotes In our case, no CT imaging of the lung, sequential GM, or culture for fungus was performed, thus reinforcing the role of autopsies as a form of postmortem surveillance of such a severe disease.
T95 10951-11154 Sentence denotes As the outbreak of COVID-19 continues to spread around the world, further reports are needed to assess the occurrence and frequency of IPA in severe SARS-CoV-2 infections, and their clinical interaction.
T96 11155-11327 Sentence denotes These studies are needed to assess the incidence of IPA and define at-risk populations, thus offering a strategy for diagnosis, prophylaxis, and timely clinical management.
T97 11329-11344 Sentence denotes ACKNOWLEDGMENTS
T98 11345-11431 Sentence denotes Thanks to the Pathology Department of Universidade Federal do Amazonas Medical School.
T99 11433-11451 Sentence denotes Financial Support:
T100 11452-11523 Sentence denotes This study was funded by FAPEAM through PAPAC and POSGRAD public calls.
T101 11524-11564 Sentence denotes WMM, FGN, AP, and MVGL are CNPq fellows.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 10-42 Phenotype denotes Invasive Pulmonary Aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T2 176-208 Phenotype denotes invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T3 210-213 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T4 470-473 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T5 640-643 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T6 838-847 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T7 852-858 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806
T8 917-937 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T9 1174-1193 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T10 1223-1232 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T11 1345-1377 Phenotype denotes invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T12 1379-1382 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T13 1418-1421 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T14 1842-1845 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T15 3120-3132 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T16 3134-3159 Phenotype denotes type II diabetes mellitus http://purl.obolibrary.org/obo/HP_0005978
T17 3165-3187 Phenotype denotes chronic kidney disease http://purl.obolibrary.org/obo/HP_0012622
T18 3601-3609 Phenotype denotes cyanosis http://purl.obolibrary.org/obo/HP_0000961
T19 3746-3756 Phenotype denotes aspiration http://purl.obolibrary.org/obo/HP_0002835
T20 4509-4521 Phenotype denotes neutrophilia http://purl.obolibrary.org/obo/HP_0011897
T21 4533-4544 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T22 4830-4835 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273
T23 4855-4866 Phenotype denotes hypotension http://purl.obolibrary.org/obo/HP_0002615
T24 4871-4882 Phenotype denotes bradycardia http://purl.obolibrary.org/obo/HP_0001662
T25 7467-7470 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T26 7565-7568 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T27 7702-7727 Phenotype denotes Type II diabetes mellitus http://purl.obolibrary.org/obo/HP_0005978
T28 7732-7754 Phenotype denotes chronic kidney disease http://purl.obolibrary.org/obo/HP_0012622
T29 8074-8077 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T30 8101-8104 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T31 8198-8207 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T32 8265-8282 Phenotype denotes acute lung injury http://www.orpha.net/ORDO/Orphanet_178320
T33 8288-8311 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T34 9097-9100 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T35 10221-10230 Phenotype denotes keratitis http://purl.obolibrary.org/obo/HP_0000491
T36 10313-10322 Phenotype denotes arteritis http://purl.obolibrary.org/obo/HP_0012089
T37 10489-10492 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T38 10518-10527 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T39 10637-10640 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T40 11086-11089 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T41 11093-11121 Phenotype denotes severe SARS-CoV-2 infections http://purl.obolibrary.org/obo/HP_0033141
T42 11207-11210 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103

2_test

Id Subject Object Predicate Lexical cue
32638890-12890854-134289058 1054-1055 12890854 denotes 2
32638890-30299367-134289059 1233-1234 30299367 denotes 3
32638890-30076119-134289060 1384-1385 30076119 denotes 4
32638890-30299367-134289061 1506-1507 30299367 denotes 3
32638890-29325970-134289062 1613-1614 29325970 denotes 5
32638890-12890854-134289063 1635-1636 12890854 denotes 2
32638890-32470620-134289064 1815-1816 32470620 denotes 8
32638890-32470620-134289065 2023-2024 32470620 denotes 8
32638890-29325970-134289066 2560-2561 29325970 denotes 5
32638890-20392915-134289067 6954-6956 20392915 denotes 10
32638890-32470620-134289068 8012-8013 32470620 denotes 8
32638890-29325970-134289069 9101-9102 29325970 denotes 5
32638890-23482646-134289070 9441-9443 23482646 denotes 11
32638890-28440960-134289071 10076-10078 28440960 denotes 12
32638890-26579953-134289072 10323-10325 26579953 denotes 13
32638890-31667056-134289073 10337-10339 31667056 denotes 15

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T1 19-28 UBERON:0002048 denotes Pulmonary
T2 47-55 SP_7 denotes COVID-19
T3 70-80 GO:0016265 denotes postmortem
T4 101-111 GO:0016265 denotes antemortem
T5 153-163 GO:0016265 denotes postmortem
T6 185-194 UBERON:0002048 denotes pulmonary
T7 240-248 SP_7 denotes COVID-19
T8 263-271 SP_7 denotes COVID-19
T9 316-320 GO:0016265 denotes died
T10 329-343 CHEBI:35718;CHEBI:35718 denotes antimicrobials
T11 424-429 UBERON:0000178 denotes blood
T12 430-443 CHEBI:27680;CHEBI:27680 denotes galactomannan
T13 444-451 CHEBI:59132;CHEBI:59132 denotes antigen
T14 475-501 NCBITaxon:41959 denotes Aspergillus penicillioides
T15 647-657 SP_7 denotes SARS-CoV-2
T16 718-726 SP_7 denotes COVID-19
T17 917-928 UBERON:0001004 denotes respiratory
T18 954-959 NCBITaxon:10239 denotes viral
T19 980-990 SP_7 denotes SARS-CoV-2
T20 1174-1185 UBERON:0001004 denotes respiratory
T21 1354-1363 UBERON:0002048 denotes pulmonary
T22 1549-1554 CHEBI:23888;CHEBI:23888 denotes drugs
T23 1564-1575 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T24 1580-1595 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T25 1675-1686 UBERON:0001004 denotes respiratory
T26 1697-1701 SP_10 denotes SARS
T27 1708-1712 GO:0016265 denotes died
T28 1761-1776 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T29 1886-1894 SP_7 denotes COVID-19
T30 1927-1931 GO:0040007 denotes grew
T31 1932-1953 NCBITaxon:746128 denotes Aspergillus fumigatus
T32 1973-1978 UBERON:0001977 denotes serum
T33 1979-1992 CHEBI:27680;CHEBI:27680 denotes galactomannan
T34 1998-2005 CHEBI:59132;CHEBI:59132 denotes antigen
T35 2053-2062 UBERON:0002048 denotes pulmonary
T36 2075-2085 GO:0016265 denotes postmortem
T37 2217-2225 SP_7 denotes COVID-19
T38 2288-2299 NCBITaxon:5052 denotes Aspergillus
T39 2313-2324 UBERON:0001004 denotes respiratory
T40 2381-2386 UBERON:0000178 denotes blood
T41 2405-2413 SP_7 denotes COVID-19
T42 2431-2440 UBERON:0007221 denotes care unit
T43 2622-2630 SP_7 denotes COVID-19
T44 2743-2747 UBERON:0002048 denotes Lung
T45 2903-2911 SP_7 denotes COVID-19
T46 3007-3013 GO:0016265 denotes deaths
T47 3173-3179 UBERON:0002113 denotes kidney
T48 3314-3322 SP_7 denotes COVID-19
T49 3426-3434 SP_7 denotes COVID-19
T50 3496-3507 UBERON:0006060 denotes orotracheal
T51 3550-3555 CHEBI:23888;CHEBI:23888 denotes drugs
T52 3775-3779 UBERON:0000025 denotes tube
T53 3844-3848 CHEBI:16526;CHEBI:16526 denotes FiO2
T54 3853-3864 UBERON:0001004 denotes respiratory
T55 3938-3949 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T56 3974-3985 CHEBI:3638;CHEBI:3638;DG_10 denotes chloroquine
T57 4045-4057 CHEBI:2955;CHEBI:2955;DG_6 denotes azithromycin
T58 4075-4086 CHEBI:29007;CHEBI:29007 denotes ceftriaxone
T59 4100-4110 CHEBI:47426;CHEBI:47426 denotes furosemide
T60 4180-4194 CHEBI:50858;CHEBI:50858 denotes corticosteroid
T61 4195-4200 CHEBI:23888;CHEBI:23888 denotes drugs
T62 4251-4255 CHEBI:16199;CHEBI:16199 denotes urea
T63 4271-4281 CHEBI:16737;CHEBI:16737 denotes creatinine
T64 4300-4318 PR:000005897 denotes C-reactive protein
T65 4426-4436 CL:0000738 denotes Leukocytes
T66 4447-4456 CL:0000233 denotes platelets
T67 4509-4521 CL:0000775 denotes neutrophilia
T68 4649-4653 UBERON:0002171 denotes lobe
T69 4681-4686 UBERON:0000178 denotes Blood
T70 4712-4721 NCBITaxon:2 denotes bacterial
T71 4887-4891 GO:0016265 denotes died
T72 5039-5044 GO:0016265 denotes death
T73 5324-5328 UBERON:0002048 denotes lung
T74 5378-5383 UBERON:0000101 denotes lower
T75 5384-5388 UBERON:0002171 denotes lobe
T76 5423-5427 UBERON:0002048 denotes lung
T77 5467-5478 NCBITaxon:5052 denotes Aspergillus
T78 5512-5518 NCBITaxon:4751 denotes fungal
T79 5558-5562 UBERON:0000033 denotes head
T80 5629-5635 UBERON:0010210;CHEBI:5054;CHEBI:5054 denotes fibrin
T81 5636-5643 UBERON:0010210 denotes thrombi
T82 5657-5663 UBERON:0001637 denotes artery
T83 5723-5728 UBERON:0000178 denotes blood
T84 5756-5763 CHEBI:59132;CHEBI:59132 denotes antigen
T85 5808-5818 GO:0016265 denotes postmortem
T86 5857-5867 GO:0016265 denotes antemortem
T87 5872-5878 UBERON:0007311 denotes sputum
T88 5897-5903 NCBITaxon:4751 denotes fungus
T89 5919-5929 CHEBI:35718;CHEBI:35718 denotes antifungal
T90 5930-5935 CHEBI:86327;CHEBI:86327 denotes drugs
T91 5980-5984 UBERON:0002048 denotes lung
T92 6009-6015 NCBITaxon:4751 denotes fungal
T93 6032-6033 CHEBI:51686;CHEBI:51686 denotes H
T94 6104-6110 NCBITaxon:4751 denotes fungal
T95 6141-6152 NCBITaxon:5052 denotes Aspergillus
T96 6153-6157 UBERON:0000033 denotes head
T97 6226-6232 NCBITaxon:4751 denotes fungal
T98 6502-6509 UBERON:0003215 denotes alveoli
T99 6520-6531 CL:0000775 denotes neutrophils
T100 6533-6534 CHEBI:51686;CHEBI:51686 denotes H
T101 6548-6554 CHEBI:5054;CHEBI:5054;UBERON:0010210 denotes Fibrin
T102 6555-6562 UBERON:0010210 denotes thrombi
T103 6588-6594 UBERON:0001637 denotes artery
T104 6596-6597 CHEBI:51686;CHEBI:51686 denotes H
T105 6633-6641 UBERON:0003215;CL:0000322 denotes alveolar
T106 6642-6652 CL:0000322;UBERON:0000483 denotes epithelial
T107 6653-6658 CL:0000322 denotes cells
T108 6660-6661 CHEBI:51686;CHEBI:51686 denotes H
T127 6705-6716 NCBITaxon:5052 denotes Aspergillus
T128 6832-6841 GO:0005840 denotes ribosomal
T129 6917-6924 SO:0000112 denotes primers
T130 7069-7076 SO:0000112 denotes primers
T131 7146-7152 SO:0000149 denotes contig
T132 7292-7318 NCBITaxon:41959 denotes Aspergillus penicillioides
T133 7506-7514 SP_7 denotes COVID-19
T134 7740-7746 UBERON:0002113 denotes kidney
T135 8028-8038 GO:0016265 denotes postmortem
T136 8039-8043 UBERON:0002048 denotes lung
T137 8082-8090 SP_7 denotes COVID-19
T138 8126-8135 UBERON:0004242 denotes bronchial
T139 8136-8140 UBERON:0000060 denotes wall
T140 8226-8241 UBERON:0008946 denotes lung parenchyma
T141 8271-8275 UBERON:0002048 denotes lung
T142 8296-8304 UBERON:0003215 denotes alveolar
T143 8381-8386 NCBITaxon:4751 denotes fungi
T144 8415-8428 UBERON:0001981 denotes blood vessels
T145 8485-8491 NCBITaxon:4751 denotes fungus
T146 8515-8530 UBERON:0002186 denotes bronchoalveolar
T147 8602-8610 SP_7 denotes COVID-19
T148 8679-8686 CHEBI:59132;CHEBI:59132 denotes antigen
T149 8701-8706 UBERON:0000178 denotes blood
T150 8842-8849 UBERON:0000055 denotes vessels
T151 8942-8953 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T152 9122-9137 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T153 9176-9184 SP_7 denotes COVID-19
T154 9280-9295 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T155 9300-9311 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T156 9321-9331 SP_7 denotes SARS-CoV-2
T157 9354-9365 CHEBI:3638;DG_10;CHEBI:3638 denotes chloroquine
T158 9389-9393 CHEBI:23888;CHEBI:23888 denotes drug
T159 9414-9420 UBERON:0002405;GO:0006955 denotes immune
T160 9421-9429 GO:0006955 denotes response
T161 9522-9526 GO:0016265 denotes died
T162 9600-9606 NCBITaxon:4751 denotes fungal
T163 9695-9703 SP_7 denotes COVID-19
T164 9859-9866 NCBITaxon:species denotes species
T165 9934-9939 SP_6;NCBITaxon:9606 denotes human
T166 9944-9950 NCBITaxon:33208 denotes animal
T167 10149-10150 NCBITaxon:8296 denotes A
T168 10290-10312 UBERON:0001017 denotes central nervous system
T169 10408-10415 NCBITaxon:species denotes species
T170 10544-10552 SP_7 denotes COVID-19
T171 10791-10795 UBERON:0002048 denotes lung
T172 10827-10833 NCBITaxon:4751 denotes fungus
T173 10901-10911 GO:0016265 denotes postmortem
T174 10912-10924 GO:0065007 denotes surveillance
T175 10970-10978 SP_7 denotes COVID-19
T176 11100-11110 SP_7 denotes SARS-CoV-2
T23096 19-28 UBERON:0002048 denotes Pulmonary
T95364 47-55 SP_7 denotes COVID-19
T83804 70-80 GO:0016265 denotes postmortem
T89606 101-111 GO:0016265 denotes antemortem
T89862 153-163 GO:0016265 denotes postmortem
T90830 185-194 UBERON:0002048 denotes pulmonary
T1066 240-248 SP_7 denotes COVID-19
T80195 263-271 SP_7 denotes COVID-19
T6817 316-320 GO:0016265 denotes died
T2550 329-343 CHEBI:35718;CHEBI:35718 denotes antimicrobials
T8260 424-429 UBERON:0000178 denotes blood
T28696 430-443 CHEBI:27680;CHEBI:27680 denotes galactomannan
T49528 444-451 CHEBI:59132;CHEBI:59132 denotes antigen
T54553 475-501 NCBITaxon:41959 denotes Aspergillus penicillioides
T55893 647-657 SP_7 denotes SARS-CoV-2
T10975 718-726 SP_7 denotes COVID-19
T9972 917-928 UBERON:0001004 denotes respiratory
T44879 954-959 NCBITaxon:10239 denotes viral
T10889 980-990 SP_7 denotes SARS-CoV-2
T56159 1174-1185 UBERON:0001004 denotes respiratory
T87696 1354-1363 UBERON:0002048 denotes pulmonary
T74450 1549-1554 CHEBI:23888;CHEBI:23888 denotes drugs
T70529 1564-1575 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T54454 1580-1595 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T90991 1675-1686 UBERON:0001004 denotes respiratory
T80841 1697-1701 SP_10 denotes SARS
T15928 1708-1712 GO:0016265 denotes died
T2908 1761-1776 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T17935 1886-1894 SP_7 denotes COVID-19
T49431 1927-1931 GO:0040007 denotes grew
T73074 1932-1953 NCBITaxon:746128 denotes Aspergillus fumigatus
T55704 1973-1978 UBERON:0001977 denotes serum
T61728 1979-1992 CHEBI:27680;CHEBI:27680 denotes galactomannan
T66622 1998-2005 CHEBI:59132;CHEBI:59132 denotes antigen
T77392 2053-2062 UBERON:0002048 denotes pulmonary
T64062 2075-2085 GO:0016265 denotes postmortem
T85604 2217-2225 SP_7 denotes COVID-19
T74035 2288-2299 NCBITaxon:5052 denotes Aspergillus
T644 2313-2324 UBERON:0001004 denotes respiratory
T47982 2381-2386 UBERON:0000178 denotes blood
T97836 2405-2413 SP_7 denotes COVID-19
T31476 2431-2440 UBERON:0007221 denotes care unit
T4469 2622-2630 SP_7 denotes COVID-19
T35848 2743-2747 UBERON:0002048 denotes Lung
T65233 2903-2911 SP_7 denotes COVID-19
T63671 3007-3013 GO:0016265 denotes deaths
T98313 3173-3179 UBERON:0002113 denotes kidney
T14556 3314-3322 SP_7 denotes COVID-19
T45329 3426-3434 SP_7 denotes COVID-19
T62007 3496-3507 UBERON:0006060 denotes orotracheal
T81053 3550-3555 CHEBI:23888;CHEBI:23888 denotes drugs
T84418 3775-3779 UBERON:0000025 denotes tube
T13632 3844-3848 CHEBI:16526;CHEBI:16526 denotes FiO2
T35862 3853-3864 UBERON:0001004 denotes respiratory
T24320 3938-3949 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T83491 3974-3985 CHEBI:3638;CHEBI:3638;DG_10 denotes chloroquine
T9292 4045-4057 CHEBI:2955;CHEBI:2955;DG_6 denotes azithromycin
T19984 4075-4086 CHEBI:29007;CHEBI:29007 denotes ceftriaxone
T4490 4100-4110 CHEBI:47426;CHEBI:47426 denotes furosemide
T37947 4180-4194 CHEBI:50858;CHEBI:50858 denotes corticosteroid
T19256 4195-4200 CHEBI:23888;CHEBI:23888 denotes drugs
T6586 4251-4255 CHEBI:16199;CHEBI:16199 denotes urea
T20602 4271-4281 CHEBI:16737;CHEBI:16737 denotes creatinine
T37535 4300-4318 PR:000005897 denotes C-reactive protein
T59138 4426-4436 CL:0000738 denotes Leukocytes
T94991 4447-4456 CL:0000233 denotes platelets
T9825 4509-4521 CL:0000775 denotes neutrophilia
T4481 4649-4653 UBERON:0002171 denotes lobe
T6767 4681-4686 UBERON:0000178 denotes Blood
T5667 4712-4721 NCBITaxon:2 denotes bacterial
T1728 4887-4891 GO:0016265 denotes died
T27792 5039-5044 GO:0016265 denotes death
T45015 5324-5328 UBERON:0002048 denotes lung
T95141 5378-5383 UBERON:0000101 denotes lower
T63510 5384-5388 UBERON:0002171 denotes lobe
T50592 5423-5427 UBERON:0002048 denotes lung
T54529 5467-5478 NCBITaxon:5052 denotes Aspergillus
T53412 5512-5518 NCBITaxon:4751 denotes fungal
T84391 5558-5562 UBERON:0000033 denotes head
T7647 5629-5635 UBERON:0010210;CHEBI:5054;CHEBI:5054 denotes fibrin
T64013 5636-5643 UBERON:0010210 denotes thrombi
T81261 5657-5663 UBERON:0001637 denotes artery
T18084 5723-5728 UBERON:0000178 denotes blood
T70655 5756-5763 CHEBI:59132;CHEBI:59132 denotes antigen
T71653 5808-5818 GO:0016265 denotes postmortem
T7484 5857-5867 GO:0016265 denotes antemortem
T96965 5872-5878 UBERON:0007311 denotes sputum
T78632 5897-5903 NCBITaxon:4751 denotes fungus
T68516 5919-5929 CHEBI:35718;CHEBI:35718 denotes antifungal
T92277 5930-5935 CHEBI:86327;CHEBI:86327 denotes drugs
T81207 5980-5984 UBERON:0002048 denotes lung
T65437 6009-6015 NCBITaxon:4751 denotes fungal
T92241 6032-6033 CHEBI:51686;CHEBI:51686 denotes H
T64480 6104-6110 NCBITaxon:4751 denotes fungal
T74480 6141-6152 NCBITaxon:5052 denotes Aspergillus
T31521 6153-6157 UBERON:0000033 denotes head
T29491 6226-6232 NCBITaxon:4751 denotes fungal
T83684 6502-6509 UBERON:0003215 denotes alveoli
T62000 6520-6531 CL:0000775 denotes neutrophils
T43627 6533-6534 CHEBI:51686;CHEBI:51686 denotes H
T39112 6548-6554 CHEBI:5054;CHEBI:5054;UBERON:0010210 denotes Fibrin
T37990 6555-6562 UBERON:0010210 denotes thrombi
T93077 6588-6594 UBERON:0001637 denotes artery
T41475 6596-6597 CHEBI:51686;CHEBI:51686 denotes H
T29535 6633-6641 UBERON:0003215;CL:0000322 denotes alveolar
T32471 6642-6652 CL:0000322;UBERON:0000483 denotes epithelial
T46776 6653-6658 CL:0000322 denotes cells
T9064 6660-6661 CHEBI:51686;CHEBI:51686 denotes H
T358 6705-6716 NCBITaxon:5052 denotes Aspergillus
T55757 6832-6841 GO:0005840 denotes ribosomal
T8859 6917-6924 SO:0000112 denotes primers
T66811 7069-7076 SO:0000112 denotes primers
T27374 7146-7152 SO:0000149 denotes contig
T19455 7292-7318 NCBITaxon:41959 denotes Aspergillus penicillioides
T82423 7506-7514 SP_7 denotes COVID-19
T34071 7740-7746 UBERON:0002113 denotes kidney
T61699 8028-8038 GO:0016265 denotes postmortem
T93941 8039-8043 UBERON:0002048 denotes lung
T73256 8082-8090 SP_7 denotes COVID-19
T83346 8126-8135 UBERON:0004242 denotes bronchial
T74144 8136-8140 UBERON:0000060 denotes wall
T44419 8226-8241 UBERON:0008946 denotes lung parenchyma
T67181 8271-8275 UBERON:0002048 denotes lung
T79335 8296-8304 UBERON:0003215 denotes alveolar
T86622 8381-8386 NCBITaxon:4751 denotes fungi
T73261 8415-8428 UBERON:0001981 denotes blood vessels
T66563 8485-8491 NCBITaxon:4751 denotes fungus
T54734 8515-8530 UBERON:0002186 denotes bronchoalveolar
T1262 8602-8610 SP_7 denotes COVID-19
T38840 8679-8686 CHEBI:59132;CHEBI:59132 denotes antigen
T52237 8701-8706 UBERON:0000178 denotes blood
T44074 8842-8849 UBERON:0000055 denotes vessels
T51918 8942-8953 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T80887 9122-9137 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T94411 9176-9184 SP_7 denotes COVID-19
T32486 9280-9295 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T69774 9300-9311 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T10050 9321-9331 SP_7 denotes SARS-CoV-2
T11082 9354-9365 CHEBI:3638;DG_10;CHEBI:3638 denotes chloroquine
T74372 9389-9393 CHEBI:23888;CHEBI:23888 denotes drug
T87907 9414-9420 UBERON:0002405;GO:0006955 denotes immune
T30095 9421-9429 GO:0006955 denotes response
T9576 9522-9526 GO:0016265 denotes died
T74942 9600-9606 NCBITaxon:4751 denotes fungal
T51897 9695-9703 SP_7 denotes COVID-19
T28441 9859-9866 NCBITaxon:species denotes species
T32148 9934-9939 SP_6;NCBITaxon:9606 denotes human
T62069 9944-9950 NCBITaxon:33208 denotes animal
T83688 10149-10150 NCBITaxon:8296 denotes A
T72912 10290-10312 UBERON:0001017 denotes central nervous system
T85719 10408-10415 NCBITaxon:species denotes species
T94369 10544-10552 SP_7 denotes COVID-19
T82530 10791-10795 UBERON:0002048 denotes lung
T25732 10827-10833 NCBITaxon:4751 denotes fungus
T91787 10901-10911 GO:0016265 denotes postmortem
T81843 10912-10924 GO:0065007 denotes surveillance
T28979 10970-10978 SP_7 denotes COVID-19
T62679 11100-11110 SP_7 denotes SARS-CoV-2