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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T3 81-89 SP_7 denotes COVID-19
T4 115-122 CL:0000763 denotes myeloid
T5 168-176 SP_7 denotes COVID-19
T6 557-565 SP_7 denotes COVID-19
T7 604-609 UBERON:0007023 denotes adult
T8 633-638 UBERON:0007023 denotes adult
T9 661-670 SP_7 denotes SARS-CoV2
T10 691-699 SP_7 denotes COVID-19
T11 922-927 UBERON:0007023 denotes adult
T12 1495-1503 SP_7 denotes COVID-19
T13 1626-1634 SP_7 denotes COVID-19
T14 1730-1736 GO:0007631 denotes intake
T15 2381-2392 NCBITaxon:11118 denotes coronavirus
T16 2629-2634 UBERON:0002398 denotes hands
T17 2655-2660 UBERON:0002398 denotes hands
T18 2717-2725 SP_7 denotes COVID-19
T19 2792-2800 SP_7 denotes COVID-19
T20 2875-2883 SP_7 denotes COVID-19
T21 2961-2969 SP_7 denotes COVID-19
T22 3081-3092 NCBITaxon:11118 denotes coronavirus
T24 3690-3699 SP_7 denotes SARS-CoV2
T25 3890-3898 CHEBI:45783;CHEBI:45783 denotes imatinib
T26 4099-4107 SP_7 denotes COVID-19
T27 4344-4348 UBERON:0001456 denotes face
T28 4745-4754 SP_7 denotes SARS-CoV2
T29 4796-4802 UBERON:0000473 denotes Tested
T30 4974-4979 UBERON:0007023 denotes adult
T31 5281-5289 SP_7 denotes COVID-19
T34 5826-5835 SP_7 denotes SARS-CoV2
T35 6239-6247 SP_7 denotes COVID-19
T36 6519-6530 NCBITaxon:11118 denotes coronavirus
T37 6667-6676 SP_7 denotes SARS-CoV2
T38 6677-6682 NCBITaxon:10239 denotes viral
T39 7162-7170 SP_7 denotes COVID-19
T40 7836-7845 SP_7 denotes SARS-CoV2
T41 8052-8061 SP_7 denotes SARS-CoV2
T42 8114-8122 SP_7 denotes COVID-19
T43 8171-8177 UBERON:0001005 denotes airway
T44 8300-8308 SP_7 denotes COVID-19
T19915 81-89 SP_7 denotes COVID-19
T97968 115-122 CL:0000763 denotes myeloid
T48759 168-176 SP_7 denotes COVID-19
T18992 557-565 SP_7 denotes COVID-19
T93728 604-609 UBERON:0007023 denotes adult
T73818 633-638 UBERON:0007023 denotes adult
T25523 661-670 SP_7 denotes SARS-CoV2
T44331 691-699 SP_7 denotes COVID-19
T59025 922-927 UBERON:0007023 denotes adult
T12693 1495-1503 SP_7 denotes COVID-19
T93541 1626-1634 SP_7 denotes COVID-19
T90775 1730-1736 GO:0007631 denotes intake
T91107 2381-2392 NCBITaxon:11118 denotes coronavirus
T37926 2629-2634 UBERON:0002398 denotes hands
T65523 2655-2660 UBERON:0002398 denotes hands
T26976 2717-2725 SP_7 denotes COVID-19
T91672 2792-2800 SP_7 denotes COVID-19
T48204 2875-2883 SP_7 denotes COVID-19
T41126 2961-2969 SP_7 denotes COVID-19
T6820 3081-3092 NCBITaxon:11118 denotes coronavirus
T70513 3690-3699 SP_7 denotes SARS-CoV2
T92402 3890-3898 CHEBI:45783;CHEBI:45783 denotes imatinib
T20974 4099-4107 SP_7 denotes COVID-19
T88967 4344-4348 UBERON:0001456 denotes face
T28626 4745-4754 SP_7 denotes SARS-CoV2
T93531 4796-4802 UBERON:0000473 denotes Tested
T59311 4974-4979 UBERON:0007023 denotes adult
T51667 5281-5289 SP_7 denotes COVID-19
T32 6239-6247 SP_7 denotes COVID-19
T80344 6239-6247 SP_7 denotes COVID-19
T88389 6519-6530 NCBITaxon:11118 denotes coronavirus
T32342 6667-6676 SP_7 denotes SARS-CoV2
T73672 6677-6682 NCBITaxon:10239 denotes viral
T84389 7162-7170 SP_7 denotes COVID-19
T22107 7836-7845 SP_7 denotes SARS-CoV2
T77654 8052-8061 SP_7 denotes SARS-CoV2
T85367 8114-8122 SP_7 denotes COVID-19
T27737 8171-8177 UBERON:0001005 denotes airway
T76221 8300-8308 SP_7 denotes COVID-19

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 4344-4348 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T2 4637-4643 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 2629-2634 Body_part denotes hands http://purl.obolibrary.org/obo/UBERON_0002398
T2 2655-2660 Body_part denotes hands http://purl.obolibrary.org/obo/UBERON_0002398
T3 4279-4284 Body_part denotes hands http://purl.obolibrary.org/obo/UBERON_0002398
T4 4308-4313 Body_part denotes hands http://purl.obolibrary.org/obo/UBERON_0002398
T5 4344-4348 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T6 4637-4643 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T5 81-89 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T6 134-137 Disease denotes CML http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996
T8 168-176 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T9 191-194 Disease denotes CML http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996
T11 557-565 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T12 610-613 Disease denotes CML http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996
T14 661-665 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T15 691-699 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T16 859-862 Disease denotes CML http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996
T18 1119-1122 Disease denotes CML http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996
T20 1495-1503 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T21 1574-1577 Disease denotes CML http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996
T23 1618-1621 Disease denotes CML http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996
T25 1626-1634 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T26 1876-1879 Disease denotes CML http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996
T28 2188-2191 Disease denotes CML http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996
T30 2281-2290 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T31 2332-2335 Disease denotes CML http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996
T33 2717-2725 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T34 2792-2800 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T35 2812-2815 Disease denotes CML http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996
T37 2875-2883 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T38 2895-2898 Disease denotes CML http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996
T40 2961-2969 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T41 3004-3007 Disease denotes CML http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996
T43 3273-3281 Disease denotes rhinitis http://purl.obolibrary.org/obo/MONDO_0003014
T44 3469-3477 Disease denotes rhinitis http://purl.obolibrary.org/obo/MONDO_0003014
T45 3690-3694 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T46 3917-3920 Disease denotes CML http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996
T48 4099-4107 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T49 4111-4114 Disease denotes CML http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996
T51 4573-4581 Disease denotes Rhinitis http://purl.obolibrary.org/obo/MONDO_0003014
T52 4632-4643 Disease denotes Sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T53 4745-4749 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T54 5048-5057 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T55 5281-5289 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T56 5826-5830 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T57 6239-6247 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T58 6251-6254 Disease denotes CML http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996
T60 6392-6395 Disease denotes CML http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996
T62 6667-6671 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T63 6677-6696 Disease denotes viral infections in http://purl.obolibrary.org/obo/MONDO_0005108
T64 6697-6700 Disease denotes CML http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996
T66 7162-7170 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T67 7171-7180 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T68 7195-7198 Disease denotes CML http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996
T70 7782-7789 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T72 7836-7840 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T73 7980-7983 Disease denotes CML http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996
T75 8052-8056 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T76 8062-8071 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T77 8075-8078 Disease denotes CML http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996
T79 8114-8122 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T80 8251-8254 Disease denotes CML http://purl.obolibrary.org/obo/MONDO_0001014|http://purl.obolibrary.org/obo/MONDO_0011996
T82 8300-8308 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T83 8309-8318 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T2 52-54 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T3 52-54 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T4 388-389 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 462-463 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 808-813 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2], a
T7 842-849 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T8 997-998 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1090-1093 http://purl.obolibrary.org/obo/CLO_0001562 denotes a 2
T10 1090-1093 http://purl.obolibrary.org/obo/CLO_0001563 denotes a 2
T11 1166-1167 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 1312-1319 http://www.ebi.ac.uk/efo/EFO_0000881 denotes digital
T13 1650-1651 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 1714-1722 http://purl.obolibrary.org/obo/CLO_0009985 denotes focusing
T15 1759-1766 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T16 1872-1875 http://purl.obolibrary.org/obo/CLO_0001079 denotes 148
T17 1933-1935 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T18 1937-1942 http://purl.obolibrary.org/obo/UBERON_0003101 denotes males
T19 1937-1942 http://www.ebi.ac.uk/efo/EFO_0000970 denotes males
T20 2208-2209 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 2379-2380 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 2831-2834 http://purl.obolibrary.org/obo/CLO_0001079 denotes 148
T23 2911-2913 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T24 3116-3117 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T25 3143-3144 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 3155-3157 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T27 3679-3685 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T28 3732-3738 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T29 3841-3842 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 3851-3855 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T31 3851-3855 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T32 3966-3972 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T33 4152-4155 http://purl.obolibrary.org/obo/CLO_0001079 denotes 148
T34 4261-4262 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T35 4298-4299 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T36 4333-4334 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T37 4344-4348 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T38 4364-4365 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T39 4432-4433 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T40 4506-4507 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T41 4537-4538 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T42 4553-4555 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T43 4559-4560 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T44 4597-4599 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T45 4755-4762 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T46 4765-4771 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Tested
T47 4796-4802 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Tested
T48 4831-4837 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T49 5753-5754 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T50 5815-5821 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T51 5866-5872 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T52 6304-6310 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T53 6324-6327 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T54 6726-6728 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T55 6726-6728 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T56 6748-6749 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T57 6871-6877 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T58 6904-6906 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T59 6904-6906 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T60 6942-6943 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 7051-7058 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T62 7140-7148 http://purl.obolibrary.org/obo/CLO_0009985 denotes focusing
T63 7386-7393 http://www.ebi.ac.uk/efo/EFO_0000881 denotes digital
T64 7425-7426 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 7501-7502 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T66 7653-7654 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T67 7702-7709 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T68 7846-7852 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T69 7929-7931 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T70 7929-7931 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T71 8042-8043 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T72 8171-8177 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway
T73 8215-8220 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T74 8236-8243 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T75 8269-8280 http://purl.obolibrary.org/obo/BFO_0000030 denotes objectively

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 52-54 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145
T2 405-410 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T3 980-985 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T4 3851-3855 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T5 3890-3898 Chemical denotes imatinib http://purl.obolibrary.org/obo/CHEBI_45783
T6 5147-5153 Chemical denotes corona http://purl.obolibrary.org/obo/CHEBI_37409
T7 6726-6728 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145
T8 6904-6906 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145
T9 7663-7668 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T10 7806-7811 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T11 7929-7931 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 6677-6693 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infections

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T3 0-14 Sentence denotes To the Editor:
T4 15-143 Sentence denotes We read with interest the article by Li et al. first to report on COVID-19 in patients with chronic myeloid leukaemia (CML) [1].
T5 144-306 Sentence denotes They found an increased COVID-19 prevalence in CML patients of the Hubei region in China when compared to the prevalence of the general population of that region.
T6 307-428 Sentence denotes Unfortunately, in this retrospective study, follow-up data were not provided and a direct control group was not included.
T7 429-757 Sentence denotes We report preliminary results of a prospective Dutch observational cohort study that assessed differences in susceptibility for COVID-19 and severity of the disease course in adult CML patients and their adult housemates during the SARS-CoV2 pandemic (the first COVID-19 case was identified on February 27th in the Netherlands).
T8 758-901 Sentence denotes Patients were invited to participate via CMyLife [2], a nationwide web-based portal focused on Dutch CML patients, from April 6th 2020 onwards.
T9 902-1047 Sentence denotes If available, their adult housemates (e.g., spouses) were included as control group, providing a better representation of the general population.
T10 1048-1118 Sentence denotes Surveys were performed at baseline and at a 2-weekly follow-up period.
T11 1119-1235 Sentence denotes CML patients receiving TKI treatment or having a discontinuation of their TKI treatment were invited to participate.
T12 1236-1382 Sentence denotes The study was approved by the Radboudumc institutional ethics committee and digital informed consent was obtained from both patients and partners.
T13 1383-1635 Sentence denotes At inclusion, information was gathered on demographics, self-reported comorbidity, vaccinations, health rating, COVID-19 related symptoms and hospital admissions and additional for patients; CML course, patients’ perceptions regarding CML and COVID-19.
T14 1636-1801 Sentence denotes Every 2 weeks a truncated shorter version of the questionnaire was conducted, focusing on TKI intake, preventive measures, testing, symptoms and hospital admissions.
T15 1802-2048 Sentence denotes At time of submission, 167 patients have registered for the study and 148 CML patients (median age, 57.5 years; range 26–82 years; 48% males) and 123 housemates (median age 60 years, range 24–88 years) were included, with enrolment still ongoing.
T16 2049-2117 Sentence denotes The baseline characteristics are presented in Supplementary Table 1.
T17 2118-2161 Sentence denotes The majority (88.4%) had taken TKI therapy.
T18 2162-2269 Sentence denotes Approximately half of the CML patients versus a third of controls had comorbidity that required medication.
T19 2270-2375 Sentence denotes The annual influenza vaccination was received by 58.0% of the CML patients and 35.8% of their housemates.
T20 2376-2530 Sentence denotes If a coronavirus vaccine would become available, both patients and their housemates would be largely willing to take this (76.3% and 68.9%, respectively).
T21 2531-2684 Sentence denotes The majority applied preventive measures as recommended by national institutes (e.g., not shaking hands, frequently washing hands and social distancing).
T22 2685-2747 Sentence denotes Patients’ perceptions regarding COVID-19 are shown in Table 1.
T23 2748-2816 Sentence denotes Table 1 Reported perceptions of patients on COVID-19 related to CML.
T24 2817-2835 Sentence denotes Patients (N = 148)
T25 2836-2841 Sentence denotes % (n)
T26 2842-2898 Sentence denotes Thinks to be more susceptible to COVID-19 because of CML
T27 2899-2914 Sentence denotes   Yes 32.4 (48)
T28 2915-2929 Sentence denotes   No 35.8 (53)
T29 2930-2953 Sentence denotes   Do not know 31.8 (47)
T30 2954-3007 Sentence denotes Thinks COVID-19 course will be more severe due to CML
T31 3008-3023 Sentence denotes   Yes 35.8 (53)
T32 3024-3038 Sentence denotes   No 20.3 (30)
T33 3039-3062 Sentence denotes   Do not know 43.9 (65)
T34 3063-3092 Sentence denotes Worries about the coronavirus
T35 3093-3113 Sentence denotes   Not at all 5.4 (8)
T36 3114-3134 Sentence denotes   A little 54.7 (81)
T37 3135-3158 Sentence denotes   Quite a bit 30.4 (45)
T38 3159-3179 Sentence denotes   Very much 9.5 (14)
T39 3180-3256 Sentence denotes Next we analysed symptoms of patients and housemates at inclusion (Table 2).
T40 3257-3371 Sentence denotes Among patients, rhinitis was the most reported symptom (16.9%), followed by coughing (14.2%) and dyspnoea (10.8%).
T41 3372-3395 Sentence denotes Fever was not reported.
T42 3396-3446 Sentence denotes Many (69.6%) patients reported to be symptom free.
T43 3447-3566 Sentence denotes Among the housemates, rhinitis was reported in 8.9% of cases, and coughing and dyspnoea in 6.5% and 2.4%, respectively.
T44 3567-3597 Sentence denotes Again, fever was not reported.
T45 3598-3651 Sentence denotes The majority (84.6%) reported to be free of symptoms.
T46 3652-3823 Sentence denotes Only two patients had been tested for SARS-CoV2 at study inclusion, of whom one tested positive and reported to have been admitted to the hospital (without ICU admission).
T47 3824-3946 Sentence denotes This patient was a 62 year male without comorbidity, who received imatinib therapy since the CML diagnosis 2 years before.
T48 3947-4010 Sentence denotes No housemates were tested nor reported any hospital admissions.
T49 4011-4137 Sentence denotes Table 2 Information on preventive measures, symptoms and hospital admissions related to COVID-19 in CML patients at inclusion.
T50 4138-4177 Sentence denotes Patients (N = 148) Housemates (N = 124)
T51 4178-4189 Sentence denotes % (n) % (n)
T52 4190-4228 Sentence denotes Visited affected areaa 3.4 (5) 4.1 (5)
T53 4229-4249 Sentence denotes Preventive measuresb
T54 4250-4262 Sentence denotes   None 0 N/A
T55 4263-4299 Sentence denotes   Avoid shaking hands 85.1 (126) N/A
T56 4300-4334 Sentence denotes   Clean hands often 84.5 (125) N/A
T57 4335-4365 Sentence denotes   Use of face mask 2.7 (4) N/A
T58 4366-4433 Sentence denotes   Working from home, just as same-function colleagues 31.8 (47) N/A
T59 4434-4507 Sentence denotes   Working from home, in contrary to same-function colleagues 6.8 (10) N/A
T60 4508-4538 Sentence denotes   Self-isolation 41.2 (61) N/A
T61 4539-4560 Sentence denotes   Other 14.9 (22) N/A
T62 4561-4570 Sentence denotes Symptomsb
T63 4571-4600 Sentence denotes   Rhinitis 16.9 (25) 8.9 (11)
T64 4601-4629 Sentence denotes   Coughing 14.2 (21) 6.5 (8)
T65 4630-4659 Sentence denotes   Sore throat 4.1 (6) 2.4 (3)
T66 4660-4688 Sentence denotes   Dyspnoea 10.8 (16) 2.4 (3)
T67 4689-4708 Sentence denotes   Fever 0 (0) 0 (0)
T68 4709-4744 Sentence denotes   No symptoms 69.6 (103) 84.6 (104)
T69 4745-4762 Sentence denotes SARS-CoV2 testing
T70 4763-4793 Sentence denotes   Tested, positive 0.7 (1) 0.0
T71 4794-4824 Sentence denotes   Tested, negative 0.7 (1) 0.0
T72 4825-4858 Sentence denotes   Not tested 98.0 (145) 100 (123)
T73 4859-4878 Sentence denotes   Unknown 0.7 (1) 0
T74 4879-4914 Sentence denotes Hospital admissionc 0.7 (1) 0.0 (0)
T75 4915-4962 Sentence denotes   Intensive Care Unit admission 0.0 (0) 0.0 (0)
T76 4963-5002 Sentence denotes Lives with adult housemate 85.9 (128) –
T77 5003-5018 Sentence denotes N = 131 N = 106
T78 5019-5030 Sentence denotes % (n) % (n)
T79 5031-5039 Sentence denotes Vaccines
T80 5040-5069 Sentence denotes  Annual influenza vaccination
T81 5070-5095 Sentence denotes   Yes 58.0 (76) 35.8 (38)
T82 5096-5120 Sentence denotes   No 42.0 (55) 64.1 (68)
T83 5121-5161 Sentence denotes  If available, would take corona vaccine
T84 5162-5189 Sentence denotes    Yes 76.3 (100) 68.9 (73)
T85 5190-5211 Sentence denotes    No 3.8 (5) 0.9 (1)
T86 5212-5246 Sentence denotes    Do not know 19.8 (26) 30.2 (32)
T87 5247-5365 Sentence denotes aAffected areas with high risk of COVID-19 as established by National Institute for Public Health and the Environment:
T88 5366-5454 Sentence denotes Italy, Austria, Nordrhein Westfalen (Germany), Madrid (Spain), China, South Korea, Iran.
T89 5455-5482 Sentence denotes bMultiple answers possible.
T90 5483-5574 Sentence denotes cHospital/ICU admission because of the following symptoms: coughing, dyspnoea and/or fever.
T91 5575-5696 Sentence denotes Currently, most subjects have completed their first and second 2-weekly follow-up questionnaires (Supplementary Table 2).
T92 5697-5752 Sentence denotes No patients reported (temporarily) TKI discontinuation.
T93 5753-5882 Sentence denotes A further six persons (two patients and four housemates) were tested for SARS-CoV2 during this follow-up and all tested negative.
T94 5883-5920 Sentence denotes No hospital admissions were reported.
T95 5921-6078 Sentence denotes At 2 weeks, 74.2% (n = 95) of the patients reported to be free of symptoms, compared to 79.4% (n = 100) and 88.9% (n = 16) at four and 6 weeks, respectively.
T96 6079-6175 Sentence denotes For housemates these rates were 87.6% (n = 106), 91.6% (n = 98) and 100% (n = 15), respectively.
T97 6176-6264 Sentence denotes To conclude, we found no significantly increased prevalence of COVID-19 in CML patients.
T98 6265-6358 Sentence denotes Only one patient (0.7%) reported to be tested positive and has been admitted to the hospital.
T99 6359-6531 Sentence denotes These findings are important for CML patients and professionals (prescribers of TKI) as almost 40% of patients reported to be substantially concerned about the coronavirus.
T100 6532-6735 Sentence denotes The prevalence rate is in line with the reported 0.3% in the general Dutch population [3], and with the reported low prevalence of <1% SARS-CoV2 viral infections in CML patients in the study of Li et al.
T101 6736-6892 Sentence denotes We included a representative control cohort of housemates of similar age and geographical spreading as the patients, of whom none were tested positive (0%).
T102 6893-7125 Sentence denotes Similar to Li et al. (0.9% vs 0.1%), we did find a slightly higher percentage of infected patients than in the general population (0.7% vs 0.3%) based on PCR testing on clinical indication, but this is not statistically significant.
T103 7126-7222 Sentence denotes Other studies focusing primarily on COVID-19 infection prevalence in CML population are lacking.
T104 7223-7272 Sentence denotes There are strengths and limitations to our study.
T105 7273-7594 Sentence denotes Although there may have been some self-selection bias in our study, the recruitment through the national CMyLife digital patient platform did allow for a substantial and geographically nationwide spread of participants, also in a time when many patients isolated themselves and hospital visits were limited when possible.
T106 7595-7669 Sentence denotes Also, our study was performed prospectively, and included a control group.
T107 7670-7812 Sentence denotes Furthermore, our questionnaires focused on patients’ perceptions, offering insights in the substantial level of anxiety in this patient group.
T108 7813-7898 Sentence denotes However, the number of SARS-CoV2 tested subjects was low, limiting statistical power.
T109 7899-8132 Sentence denotes Taken together, the report by Li et al. and our current data may offer relief to CML patients in general that the absolute risk of contracting a serious SARS-CoV2 infection in CML patients, was low (<1%) during the COVID-19 pandemic.
T110 8133-8330 Sentence denotes However, as we did observe more upper airway symptoms and further research should focus on serological testing in the CML population to objectively assess subclinical COVID-19 infection prevalence.
T111 8331-8403 Sentence denotes Finally, our study supports that patients can safely continue their TKI.
T112 8405-8430 Sentence denotes Supplementary information
T113 8432-8451 Sentence denotes Supplemental Tables

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 115-132 Phenotype denotes myeloid leukaemia http://purl.obolibrary.org/obo/HP_0012324
T2 3273-3281 Phenotype denotes rhinitis http://purl.obolibrary.org/obo/HP_0012384
T3 3333-3341 Phenotype denotes coughing http://purl.obolibrary.org/obo/HP_0012735
T4 3354-3362 Phenotype denotes dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T5 3372-3377 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T6 3469-3477 Phenotype denotes rhinitis http://purl.obolibrary.org/obo/HP_0012384
T7 3513-3521 Phenotype denotes coughing http://purl.obolibrary.org/obo/HP_0012735
T8 3526-3534 Phenotype denotes dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T9 3574-3579 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T10 4573-4581 Phenotype denotes Rhinitis http://purl.obolibrary.org/obo/HP_0012384
T11 4603-4611 Phenotype denotes Coughing http://purl.obolibrary.org/obo/HP_0012735
T12 4632-4643 Phenotype denotes Sore throat http://purl.obolibrary.org/obo/HP_0033050
T13 4662-4670 Phenotype denotes Dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T14 4691-4696 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T15 5542-5550 Phenotype denotes coughing http://purl.obolibrary.org/obo/HP_0012735
T16 5552-5560 Phenotype denotes dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T17 5568-5573 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T18 7782-7789 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
15 93-101 Species denotes patients Tax:9606
16 195-203 Species denotes patients Tax:9606
17 81-89 Disease denotes COVID-19 MESH:C000657245
18 107-132 Disease denotes chronic myeloid leukaemia MESH:C580075
19 134-137 Disease denotes CML MESH:D015464
20 168-176 Disease denotes COVID-19 MESH:C000657245
21 191-194 Disease denotes CML MESH:D015464
30 614-622 Species denotes patients Tax:9606
31 661-670 Species denotes SARS-CoV2 Tax:2697049
32 758-766 Species denotes Patients Tax:9606
33 863-871 Species denotes patients Tax:9606
34 557-565 Disease denotes COVID-19 MESH:C000657245
35 610-613 Disease denotes CML MESH:D015464
36 691-699 Disease denotes COVID-19 MESH:C000657245
37 859-862 Disease denotes CML MESH:D015464
41 1123-1131 Species denotes patients Tax:9606
42 1360-1368 Species denotes patients Tax:9606
43 1119-1122 Disease denotes CML MESH:D015464
50 1564-1572 Species denotes patients Tax:9606
51 1586-1594 Species denotes patients Tax:9606
52 1495-1503 Disease denotes COVID-19 MESH:C000657245
53 1574-1577 Disease denotes CML MESH:D015464
54 1618-1621 Disease denotes CML MESH:D015464
55 1626-1634 Disease denotes COVID-19 MESH:C000657245
59 1829-1837 Species denotes patients Tax:9606
60 1880-1888 Species denotes patients Tax:9606
61 1876-1879 Disease denotes CML MESH:D015464
68 2817-2825 Species denotes Patients Tax:9606
69 3081-3092 Species denotes coronavirus Tax:11118
70 2875-2883 Disease denotes COVID-19 MESH:C000657245
71 2895-2898 Disease denotes CML MESH:D015464
72 2961-2969 Disease denotes COVID-19 MESH:C000657245
73 3004-3007 Disease denotes CML MESH:D015464
77 2780-2788 Species denotes patients Tax:9606
78 2792-2800 Disease denotes COVID-19 MESH:C000657245
79 2812-2815 Disease denotes CML MESH:D015464
88 2192-2200 Species denotes patients Tax:9606
89 2336-2344 Species denotes patients Tax:9606
90 2381-2392 Species denotes coronavirus Tax:11118
91 2430-2438 Species denotes patients Tax:9606
92 2685-2693 Species denotes Patients Tax:9606
93 2188-2191 Disease denotes CML MESH:D015464
94 2332-2335 Disease denotes CML MESH:D015464
95 2717-2725 Disease denotes COVID-19 MESH:C000657245
99 4115-4123 Species denotes patients Tax:9606
100 4099-4107 Disease denotes COVID-19 MESH:C000657245
101 4111-4114 Disease denotes CML MESH:D015464
103 5281-5289 Disease denotes COVID-19 MESH:C000657245
107 5542-5550 Disease denotes coughing MESH:D003371
108 5552-5560 Disease denotes dyspnoea MESH:D004417
109 5568-5573 Disease denotes fever MESH:D005334
125 3209-3217 Species denotes patients Tax:9606
126 3263-3271 Species denotes patients Tax:9606
127 3409-3417 Species denotes patients Tax:9606
128 3661-3669 Species denotes patients Tax:9606
129 3690-3699 Species denotes SARS-CoV2 Tax:2697049
130 3829-3836 Species denotes patient Tax:9606
131 3890-3898 Chemical denotes imatinib MESH:D000068877
132 3273-3281 Disease denotes rhinitis MESH:D012220
133 3333-3341 Disease denotes coughing MESH:D003371
134 3354-3362 Disease denotes dyspnoea MESH:D004417
135 3372-3377 Disease denotes Fever MESH:D005334
136 3469-3477 Disease denotes rhinitis MESH:D012220
137 3513-3534 Disease denotes coughing and dyspnoea MESH:D003371
138 3574-3579 Disease denotes fever MESH:D005334
139 3917-3920 Disease denotes CML MESH:D015464
145 5700-5708 Species denotes patients Tax:9606
146 5767-5774 Species denotes persons Tax:9606
147 5780-5788 Species denotes patients Tax:9606
148 5826-5835 Species denotes SARS-CoV2 Tax:2697049
149 5955-5963 Species denotes patients Tax:9606
168 6255-6263 Species denotes patients Tax:9606
169 6274-6281 Species denotes patient Tax:9606
170 6396-6404 Species denotes patients Tax:9606
171 6461-6469 Species denotes patients Tax:9606
172 6519-6530 Species denotes coronavirus Tax:11118
173 6667-6676 Species denotes SARS-CoV2 Tax:2697049
174 6701-6709 Species denotes patients Tax:9606
175 6843-6851 Species denotes patients Tax:9606
176 6983-6991 Species denotes patients Tax:9606
177 6239-6247 Disease denotes COVID-19 MESH:C000657245
178 6251-6254 Disease denotes CML MESH:D015464
179 6392-6395 Disease denotes CML MESH:D015464
180 6677-6693 Disease denotes viral infections MESH:D001102
181 6697-6700 Disease denotes CML MESH:D015464
182 6974-6982 Disease denotes infected MESH:D007239
183 7162-7170 Disease denotes COVID-19 MESH:C000657245
184 7171-7180 Disease denotes infection MESH:D007239
185 7195-7198 Disease denotes CML MESH:D015464
193 7394-7401 Species denotes patient Tax:9606
194 7479-7491 Species denotes participants Tax:9606
195 7518-7526 Species denotes patients Tax:9606
196 7713-7721 Species denotes patients Tax:9606
197 7798-7805 Species denotes patient Tax:9606
198 7836-7845 Species denotes SARS-CoV2 Tax:2697049
199 7782-7789 Disease denotes anxiety MESH:D001007
211 7984-7992 Species denotes patients Tax:9606
212 8052-8061 Species denotes SARS-CoV2 Tax:2697049
213 8079-8087 Species denotes patients Tax:9606
214 8364-8372 Species denotes patients Tax:9606
215 7980-7983 Disease denotes CML MESH:D015464
216 8062-8071 Disease denotes infection MESH:D007239
217 8075-8078 Disease denotes CML MESH:D015464
218 8114-8122 Disease denotes COVID-19 MESH:C000657245
219 8251-8254 Disease denotes CML MESH:D015464
220 8300-8308 Disease denotes COVID-19 MESH:C000657245
221 8309-8318 Disease denotes infection MESH:D007239

2_test

Id Subject Object Predicate Lexical cue
32641732-32412424-66302041 808-809 32412424 denotes 2