PMC:7340597 / 9312-11182
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T28 | 177-185 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T29 | 198-210 | Body_part | denotes | fibroblastic | http://purl.org/sig/ont/fma/fma63877 |
| T30 | 312-316 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T31 | 493-501 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T32 | 560-564 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T33 | 745-753 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T34 | 754-766 | Body_part | denotes | fibroblastic | http://purl.org/sig/ont/fma/fma63877 |
| T35 | 834-838 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T36 | 987-995 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T37 | 996-1008 | Body_part | denotes | fibroblastic | http://purl.org/sig/ont/fma/fma63877 |
| T38 | 1009-1015 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T39 | 1076-1084 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T40 | 1153-1157 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T41 | 1232-1240 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T42 | 1253-1265 | Body_part | denotes | fibroblastic | http://purl.org/sig/ont/fma/fma63877 |
| T43 | 1341-1345 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T44 | 1418-1426 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T45 | 1439-1451 | Body_part | denotes | fibroblastic | http://purl.org/sig/ont/fma/fma63877 |
| T46 | 1478-1486 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T47 | 1555-1559 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T48 | 1679-1687 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T49 | 1700-1712 | Body_part | denotes | fibroblastic | http://purl.org/sig/ont/fma/fma63877 |
| T50 | 1744-1752 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T51 | 1821-1825 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T19 | 257-264 | Body_part | denotes | vessels | http://purl.obolibrary.org/obo/UBERON_0000055 |
| T20 | 1009-1015 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T21 | 1055-1062 | Body_part | denotes | exudate | http://purl.obolibrary.org/obo/UBERON_0007780 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 263 | 266-277 | Disease | denotes | hyperplasia | MESH:D006965 |
| 264 | 438-472 | Disease | denotes | subsegmental PE Extensive fibrosis | MESH:D005355 |
| 265 | 514-525 | Disease | denotes | hyperplasia | MESH:D006965 |
| 266 | 607-615 | Disease | denotes | Fibrosis | MESH:D005355 |
| 267 | 788-799 | Disease | denotes | hyperplasia | MESH:D006965 |
| 268 | 1107-1118 | Disease | denotes | hyperplasia | MESH:D006965 |
| 269 | 1295-1306 | Disease | denotes | hyperplasia | MESH:D006965 |
| 270 | 1509-1520 | Disease | denotes | hyperplasia | MESH:D006965 |
| 271 | 1775-1786 | Disease | denotes | hyperplasia | MESH:D006965 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T98 | 266-277 | Disease | denotes | hyperplasia | http://purl.obolibrary.org/obo/MONDO_0005043 |
| T99 | 359-361 | Disease | denotes | OP | http://purl.obolibrary.org/obo/MONDO_0015265 |
| T100 | 408-422 | Disease | denotes | bronchiectasis | http://purl.obolibrary.org/obo/MONDO_0004822 |
| T101 | 514-525 | Disease | denotes | hyperplasia | http://purl.obolibrary.org/obo/MONDO_0005043 |
| T102 | 654-668 | Disease | denotes | bronchiectasis | http://purl.obolibrary.org/obo/MONDO_0004822 |
| T103 | 788-799 | Disease | denotes | hyperplasia | http://purl.obolibrary.org/obo/MONDO_0005043 |
| T104 | 935-949 | Disease | denotes | bronchiectasis | http://purl.obolibrary.org/obo/MONDO_0004822 |
| T105 | 1107-1118 | Disease | denotes | hyperplasia | http://purl.obolibrary.org/obo/MONDO_0005043 |
| T106 | 1295-1306 | Disease | denotes | hyperplasia | http://purl.obolibrary.org/obo/MONDO_0005043 |
| T107 | 1388-1390 | Disease | denotes | OP | http://purl.obolibrary.org/obo/MONDO_0015265 |
| T108 | 1509-1520 | Disease | denotes | hyperplasia | http://purl.obolibrary.org/obo/MONDO_0005043 |
| T109 | 1602-1604 | Disease | denotes | OP | http://purl.obolibrary.org/obo/MONDO_0015265 |
| T110 | 1641-1655 | Disease | denotes | bronchiectasis | http://purl.obolibrary.org/obo/MONDO_0004822 |
| T111 | 1775-1786 | Disease | denotes | hyperplasia | http://purl.obolibrary.org/obo/MONDO_0005043 |
| T112 | 1868-1870 | Disease | denotes | OP | http://purl.obolibrary.org/obo/MONDO_0015265 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T65 | 198-210 | http://purl.obolibrary.org/obo/CL_0000057 | denotes | fibroblastic |
| T66 | 257-264 | http://purl.obolibrary.org/obo/UBERON_0000055 | denotes | vessels |
| T67 | 312-316 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T68 | 560-564 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T69 | 719-728 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membranes |
| T70 | 754-766 | http://purl.obolibrary.org/obo/CL_0000057 | denotes | fibroblastic |
| T71 | 834-838 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T72 | 996-1008 | http://purl.obolibrary.org/obo/CL_0000057 | denotes | fibroblastic |
| T73 | 1022-1023 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T74 | 1153-1157 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T75 | 1253-1265 | http://purl.obolibrary.org/obo/CL_0000057 | denotes | fibroblastic |
| T76 | 1341-1345 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T77 | 1439-1451 | http://purl.obolibrary.org/obo/CL_0000057 | denotes | fibroblastic |
| T78 | 1555-1559 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T79 | 1700-1712 | http://purl.obolibrary.org/obo/CL_0000057 | denotes | fibroblastic |
| T80 | 1721-1723 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
| T81 | 1821-1825 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T64 | 168-170 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
| T67 | 451-453 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
| T70 | 683-685 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
| T73 | 978-980 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
| T76 | 1670-1672 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T19 | 408-422 | Phenotype | denotes | bronchiectasis | http://purl.obolibrary.org/obo/HP_0002110 |
| T20 | 654-668 | Phenotype | denotes | bronchiectasis | http://purl.obolibrary.org/obo/HP_0002110 |
| T21 | 935-949 | Phenotype | denotes | bronchiectasis | http://purl.obolibrary.org/obo/HP_0002110 |
| T22 | 1641-1655 | Phenotype | denotes | bronchiectasis | http://purl.obolibrary.org/obo/HP_0002110 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T82 | 0-70 | Sentence | denotes | Case Radiological findings Histological findings description Diagnosis |
| T83 | 71-361 | Sentence | denotes | 1 GGO, crazy paving, non-dependent consolidation, subpleural sparing, segmental and subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (25%), micro-thrombi, thrombi in lager vessels, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP |
| T84 | 362-615 | Sentence | denotes | 2 GGO, crazy paving, resolving consolidation, bronchiectasis, segmental and subsegmental PE Extensive fibrosis with destruction of alveolar structures, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae Fibrosis |
| T85 | 616-884 | Sentence | denotes | 3 GGO, large dependent consolidation, bronchiectasis, subsegmental PE Inflammatory infiltrate, hyaline membranes, sporadic intra-alveolar fibroblastic plug, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae DAD |
| T86 | 885-1204 | Sentence | denotes | 4 GGO, crazy paving, non-dependent consolidation, bronchiectasis, segmental and subsegmental PE Intra-alveolar fibroblastic tissue, with a diffuse component of fibrinous exudate, widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae AFOP |
| T87 | 1205-1390 | Sentence | denotes | 5 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (32%), micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP |
| T88 | 1391-1604 | Sentence | denotes | 6 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (80%), widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP |
| T89 | 1605-1870 | Sentence | denotes | 7 GGO, crazy paving, consolidation, bronchiectasis, subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (27%), mild widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T191 | 5-6 | UBERON:0003215 | denotes | R |
| T192 | 10-12 | UBERON:0002048 | denotes | lo |
| T194 | 67-68 | UBERON:0001443 | denotes | s |
| T204 | 159-160 | UBERON:0002106 | denotes | e |
| T206 | 172-173 | UBERON:0002113 | denotes | n |
| T208 | 178-179 | UBERON:0002048 | denotes | l |
| T218 | 198-210 | CL:0000057 | denotes | fibroblastic |
| T227 | 240-247 | UBERON:0010210 | denotes | thrombi |
| T228 | 257-263 | UBERON:0000055 | denotes | vessel |
| T230 | 270-271 | SP_7 | denotes | r |
| T238 | 286-288 | CL:0000775 | denotes | pi |
| T240 | 293-294 | UBERON:0003215 | denotes | l |
| T248 | 299-300 | NCBITaxon:10239 | denotes | l |
| T249 | 302-305 | GO:0005634;CL:0000647 | denotes | ted |
| T250 | 306-316 | CL:0000647 | denotes | giant cell |
| T251 | 318-330 | GO:0005634 | denotes | intranuclear |
| T252 | 331-347 | GO:0016234 | denotes | inclusion bodies |
| T254 | 349-350 | UBERON:0002048 | denotes | n |
| T255 | 350-351 | UBERON:0003215 | denotes | o |
| T257 | 355-356 | CHEBI:51686;CHEBI:51686 | denotes | h |
| T260 | 360-363 | CL:0000775 | denotes | P 2 |
| T264 | 377-379 | UBERON:0003215 | denotes | vi |
| T270 | 388-390 | NCBITaxon:10239 | denotes | vi |
| T272 | 391-394 | CL:0000647 | denotes | g c |
| T274 | 394-397 | GO:0016234 | denotes | ons |
| T276 | 413-416 | UBERON:0001443 | denotes | hie |
| T277 | 440-442 | UBERON:3010752 | denotes | bs |
| T279 | 460-463 | CHEBI:8378;CHEBI:8378 | denotes | ive |
| T282 | 467-468 | UBERON:0002167 | denotes | r |
| T284 | 503-504 | CHEBI:24261;CHEBI:24261 | denotes | t |
| T286 | 523-524 | CHEBI:8378;CHEBI:8378 | denotes | i |
| T287 | 529-530 | UBERON:0000033 | denotes | h |
| T289 | 540-542 | UBERON:0001016 | denotes | ul |
| T290 | 546-548 | UBERON:0001893 | denotes | cl |
| T291 | 551-553 | UBERON:0000033 | denotes | ed |
| T292 | 562-565 | UBERON:0002048 | denotes | ll, |
| T293 | 566-567 | UBERON:0000479 | denotes | i |
| T294 | 571-572 | UBERON:0002048 | denotes | n |
| T298 | 589-592 | UBERON:0001981 | denotes | bod |
| T307 | 683-685 | CHEBI:8378;CHEBI:8378 | denotes | PE |
| T308 | 687-690 | CHEBI:8378;CHEBI:8378 | denotes | nfl |
| T310 | 697-698 | UBERON:0001004 | denotes | y |
| T313 | 712-713 | UBERON:0001004 | denotes | y |
| T318 | 726-728 | CL:0000542 | denotes | es |
| T319 | 745-753 | UBERON:0003215 | denotes | alveolar |
| T320 | 754-766 | CL:0000057 | denotes | fibroblastic |
| T321 | 767-771 | UBERON:0010148 | denotes | plug |
| T322 | 1200-1265 | UBERON:0004894 | denotes | AFOP 5 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic |
| T323 | 1286-1293 | UBERON:0010210 | denotes | thrombi |
| T324 | 1370-1397 | NCBITaxon:4751 | denotes | bodies, no hyphae OP 6 GGO, |
| T325 | 1744-1752 | UBERON:0003215 | denotes | alveolar |
| T5690 | 75-85 | UBERON:0001004 | denotes | O, crazy p |
| T89823 | 105-116 | UBERON:0002299 | denotes | consolidat |
| T6849 | 117-132 | UBERON:0002299 | denotes | on, subpleural |
| T71154 | 140-148 | SP_7 | denotes | segment |
| T14667 | 160-169 | UBERON:0002048 | denotes | gmental P |
| T66720 | 198-204 | UBERON:0002113 | denotes | fibrob |
| T11317 | 276-285 | UBERON:0002048 | denotes | a with at |
| T28427 | 423-431 | UBERON:0003215 | denotes | segment |
| T80397 | 497-506 | UBERON:0002048 | denotes | olar stru |
| T193 | 1004-1009 | UBERON:0001443 | denotes | stic |
| T73310 | 1068-1073 | UBERON:0001443 | denotes | ning |
| T195 | 1144-1154 | UBERON:0003893 | denotes | ed giant c |
| T196 | 1204-1208 | UBERON:0004096 | denotes | 5 G |
| T197 | 1273-1278 | UBERON:0000170 | denotes | (32%) |
| T198 | 1848-1853 | UBERON:0001443 | denotes | n bod |