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PMC:7340597 / 8097-9016 JSONTXT

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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T9 144-146 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T10 319-321 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T11 376-378 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T12 477-479 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T13 559-561 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T14 677-679 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T15 780-782 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T16 852-854 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
219 398-419 Species denotes Aspergillus fumigatus Tax:746128
220 580-601 Species denotes Aspergillus fumigatus Tax:746128
221 602-622 Species denotes Enterococcus faecium Tax:1352
222 699-719 Species denotes Enterococcus faecium Tax:1352
223 874-895 Species denotes Enterococcus faecalis Tax:1351
224 144-146 Chemical denotes GM MESH:C012990
225 195-206 Chemical denotes Chloroquine MESH:D002738
226 207-219 Chemical denotes Prednisolone MESH:D011239
227 262-274 Chemical denotes prednisolone MESH:D011239
228 559-561 Chemical denotes GM MESH:C012990
229 677-679 Chemical denotes GM MESH:C012990
230 105-109 Disease denotes ARDS MESH:D012128
231 756-758 Disease denotes DM MESH:D009223

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T82 105-109 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T83 190-194 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T84 756-758 Disease denotes DM http://purl.obolibrary.org/obo/MONDO_0005015|http://purl.obolibrary.org/obo/MONDO_0016367

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T52 80-86 http://purl.obolibrary.org/obo/CLO_0001929 denotes Berlin
T53 647-649 http://purl.obolibrary.org/obo/CLO_0004265 denotes HT
T54 655-657 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T55 746-751 http://purl.obolibrary.org/obo/CLO_0007487 denotes M, 83
T56 752-754 http://purl.obolibrary.org/obo/CLO_0004265 denotes HT
T57 798-800 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T58 831-833 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T59 834-836 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T33 131-133 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T36 134-137 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T37 144-146 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T39 195-206 Chemical denotes Chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T40 262-274 Chemical denotes prednisolone http://purl.obolibrary.org/obo/CHEBI_8378
T41 319-321 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T43 376-378 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T45 477-479 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T47 559-561 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T49 677-679 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T51 756-758 Chemical denotes DM http://purl.obolibrary.org/obo/CHEBI_141426
T52 780-782 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T54 852-854 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T7 144-146 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T8 319-321 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T9 376-378 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T10 477-479 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T11 559-561 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T12 677-679 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T13 780-782 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T14 852-854 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T72 0-284 Sentence denotes Case Sex, age (years) Medical history Total hospital days Total ventilated days Berlin classification of ARDS Compliance phenotype PE BAL fluid GM and culture (days post hospital admission) CAPA Chloroquine Prednisolone use during hospital admission Duration of prednisolone treatment
T73 285-340 Sentence denotes 1 M, 77 None 12 10 Severe Low Yes GM negative No Yes No
T74 341-442 Sentence denotes 2 F, 73 None 20 16 Severe High Yes GM index 4.4 (day 19) Aspergillus fumigatus Probable No Yes 8 days
T75 443-522 Sentence denotes 3 F, 58 None 30 26 Severe Low Yes GM index 3.4 (day 20) Probable Yes Yes 5 days
T76 523-638 Sentence denotes 4 M, 68 None 21 21 Moderate Low Yes GM index 5.7 (day 1) Aspergillus fumigatus Enterococcus faecium Probable Yes No
T77 639-743 Sentence denotes 5 M, 78 HT, CKI 22 21 Moderate Low No GM index 4.3 (day 20) Enterococcus faecium Probable Yes Yes 2 days
T78 744-817 Sentence denotes 6 M, 83 HT, DM 13 9 Moderate Low No GM index 1.7 (day 11) Probable Yes No
T79 818-919 Sentence denotes 7 M, 74 None 36 36 Severe Low Yes GM index 4.4 (day 24) Enterococcus faecalis Probable Yes Yes 4 days

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T142 19-26 UBERON:0010210 denotes s) Medi
T143 53-65 CL:0000647;GO:0005634 denotes days Total v
T144 66-76 CL:0000647 denotes ntilated d
T145 78-89 GO:0005634 denotes s Berlin cl
T146 90-106 GO:0016234 denotes ssification of A
T147 219-227 UBERON:0003215 denotes use dur
T148 228-241 CL:0000057 denotes ng hospital a
T149 242-248 UBERON:0000479 denotes missio
T150 309-317 UBERON:0003215 denotes e Low Ye
T151 318-323 UBERON:0003037 denotes GM n
T152 331-338 UBERON:0010210 denotes No Yes
T153 364-376 CL:0000647;GO:0005634 denotes re High Yes
T154 377-387 CL:0000647 denotes M index 4.
T155 389-400 GO:0005634 denotes (day 19) As
T156 401-417 GO:0016234 denotes ergillus fumigat
T157 457-465 UBERON:0003215 denotes 0 26 Sev
T158 478-490 CL:0000057 denotes M index 3.4
T159 511-518 UBERON:0010210 denotes Yes 5 
T160 544-556 GO:0005634;CL:0000647 denotes derate Low Y
T161 557-567 CL:0000647 denotes s GM index
T162 569-580 GO:0005634 denotes .7 (day 1)
T163 581-597 GO:0016234 denotes spergillus fumig
T164 635-643 UBERON:0003215 denotes No 5 M,
T165 656-668 CL:0000057 denotes 2 21 Moderat
T166 695-703 UBERON:0003215 denotes 20) Ente
T167 704-709 UBERON:0003037 denotes ococc
T168 717-724 UBERON:0010210 denotes um Prob
T169 750-762 GO:0005634;CL:0000647 denotes 3 HT, DM 13
T170 763-773 CL:0000647 denotes Moderate
T171 775-786 GO:0005634 denotes w No GM ind
T172 787-803 GO:0016234 denotes x 1.7 (day 11) P
T173 886-894 UBERON:0003215 denotes faecali
T174 907-919 CL:0000057 denotes s Yes 4 days