PMC:7340597 / 5683-6282
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T17 | 42-46 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T18 | 147-152 | Body_part | denotes | lungs | http://purl.org/sig/ont/fma/fma68877 |
| T19 | 181-185 | Body_part | denotes | Lung | http://purl.org/sig/ont/fma/fma7195 |
| T20 | 373-378 | Body_part | denotes | lungs | http://purl.org/sig/ont/fma/fma68877 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T13 | 42-46 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T14 | 181-185 | Body_part | denotes | Lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 197 | 72-80 | Species | denotes | patients | Tax:9606 |
| 198 | 411-419 | Chemical | denotes | formalin | MESH:D005557 |
| 199 | 433-441 | Chemical | denotes | paraffin | MESH:D010232 |
| 200 | 471-482 | Chemical | denotes | Hematoxylin | MESH:D006416 |
| 201 | 487-492 | Chemical | denotes | eosin | MESH:D004801 |
| 202 | 494-497 | Chemical | denotes | H&E | |
| 203 | 504-517 | Chemical | denotes | periodic acid | MESH:D010504 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T71 | 540-543 | Disease | denotes | PAS | http://purl.obolibrary.org/obo/MONDO_0004277 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T31 | 42-46 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T32 | 42-46 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T33 | 147-152 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lungs |
| T34 | 181-185 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | Lung |
| T35 | 181-185 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | Lung |
| T36 | 273-274 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T37 | 286-287 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T38 | 373-378 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lungs |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T16 | 504-517 | Chemical | denotes | periodic acid | http://purl.obolibrary.org/obo/CHEBI_29149 |
| T17 | 513-517 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T18 | 540-543 | Chemical | denotes | PAS | http://purl.obolibrary.org/obo/CHEBI_27565 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T45 | 0-46 | Sentence | denotes | 2.2 Postmortem needle core biopsy of the lung |
| T46 | 47-180 | Sentence | denotes | With permission from the patients' families, postmortem core needle biopsies were performed on both lungs within an hour after death. |
| T47 | 181-285 | Sentence | denotes | Lung biopsies were ultrasound and CT guided and combined with surface anatomic landmarks as a reference. |
| T48 | 286-379 | Sentence | denotes | A minimum of three histologic 14 gauge true cut needle biopsies were performed in both lungs. |
| T49 | 380-470 | Sentence | denotes | Biopsy specimens were fixed in formalin, embedded in paraffin, and cut into 3 μm sections. |
| T50 | 471-599 | Sentence | denotes | Hematoxylin and eosin (H&E), and periodic acid–Schiff with diastase (PAS-D) stains were applied according to routine procedures. |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T82 | 5-15 | GO:0016265 | denotes | Postmortem |
| T83 | 42-46 | UBERON:0002048 | denotes | lung |
| T84 | 92-102 | GO:0016265 | denotes | postmortem |
| T85 | 147-152 | UBERON:0000170 | denotes | lungs |
| T86 | 174-179 | GO:0016265 | denotes | death |
| T87 | 181-185 | UBERON:0002048 | denotes | Lung |
| T88 | 251-259 | UBERON:0001062 | denotes | anatomic |
| T89 | 373-378 | UBERON:0000170 | denotes | lungs |
| T90 | 411-419 | CHEBI:16842;CHEBI:16842 | denotes | formalin |
| T91 | 471-482 | CHEBI:51686;CHEBI:51686 | denotes | Hematoxylin |
| T92 | 494-495 | CHEBI:51686;CHEBI:51686 | denotes | H |
| T93 | 504-517 | CHEBI:29149;CHEBI:29149 | denotes | periodic acid |
| T3137 | 41-55 | CHEBI:50858;CHEBI:50858 | denotes | lung With per |
| T8024 | 97-104 | CHEBI:35341;CHEBI:35341 | denotes | ortem c |
| T69823 | 180-185 | UBERON:0001443 | denotes | Lung |
| T65939 | 270-279 | UBERON:0002048 | denotes | as a refe |
| T56069 | 341-350 | CHEBI:35341;CHEBI:35341 | denotes | biopsies |
| T93868 | 397-402 | UBERON:0001443 | denotes | were |
| T38163 | 436-441 | UBERON:0000170 | denotes | affin |