PMC:7340597 / 27942-28577 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T148","span":{"begin":103,"end":109},"obj":"Body_part"},{"id":"T149","span":{"begin":281,"end":285},"obj":"Body_part"}],"attributes":[{"id":"A148","pred":"fma_id","subj":"T148","obj":"http://purl.org/sig/ont/fma/fma9637"},{"id":"A149","pred":"fma_id","subj":"T149","obj":"http://purl.org/sig/ont/fma/fma7195"}],"text":"We acknowledge the limitations of this report and realize that due to limited sample size of pulmonary tissue, a sampling error in our histologic findings cannot be excluded. Although conventional autopsy might be the preferred postmortem examination, postmortem ultrasound guided lung biopsies are a safe and valuable alternative, with an 83% concordance rate with conventional autopsy [37]. Especially in times of new emerging diseases, like COVID-19, histopathological investigation is essential in understanding the pathogenesis of SARS-CoV-2 infection and thereby providing information leading to possible new therapeutic options."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T89","span":{"begin":103,"end":109},"obj":"Body_part"},{"id":"T90","span":{"begin":281,"end":285},"obj":"Body_part"}],"attributes":[{"id":"A89","pred":"uberon_id","subj":"T89","obj":"http://purl.obolibrary.org/obo/UBERON_0000479"},{"id":"A90","pred":"uberon_id","subj":"T90","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"}],"text":"We acknowledge the limitations of this report and realize that due to limited sample size of pulmonary tissue, a sampling error in our histologic findings cannot be excluded. Although conventional autopsy might be the preferred postmortem examination, postmortem ultrasound guided lung biopsies are a safe and valuable alternative, with an 83% concordance rate with conventional autopsy [37]. Especially in times of new emerging diseases, like COVID-19, histopathological investigation is essential in understanding the pathogenesis of SARS-CoV-2 infection and thereby providing information leading to possible new therapeutic options."}

{"project":"LitCovid-PubTator","denotations":[{"id":"650","span":{"begin":444,"end":452},"obj":"Disease"},{"id":"651","span":{"begin":536,"end":556},"obj":"Disease"}],"attributes":[{"id":"A650","pred":"tao:has_database_id","subj":"650","obj":"MESH:C000657245"},{"id":"A651","pred":"tao:has_database_id","subj":"651","obj":"MESH:C000657245"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"We acknowledge the limitations of this report and realize that due to limited sample size of pulmonary tissue, a sampling error in our histologic findings cannot be excluded. Although conventional autopsy might be the preferred postmortem examination, postmortem ultrasound guided lung biopsies are a safe and valuable alternative, with an 83% concordance rate with conventional autopsy [37]. Especially in times of new emerging diseases, like COVID-19, histopathological investigation is essential in understanding the pathogenesis of SARS-CoV-2 infection and thereby providing information leading to possible new therapeutic options."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T256","span":{"begin":444,"end":452},"obj":"Disease"},{"id":"T257","span":{"begin":536,"end":544},"obj":"Disease"},{"id":"T258","span":{"begin":547,"end":556},"obj":"Disease"}],"attributes":[{"id":"A256","pred":"mondo_id","subj":"T256","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A257","pred":"mondo_id","subj":"T257","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A258","pred":"mondo_id","subj":"T258","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"}],"text":"We acknowledge the limitations of this report and realize that due to limited sample size of pulmonary tissue, a sampling error in our histologic findings cannot be excluded. Although conventional autopsy might be the preferred postmortem examination, postmortem ultrasound guided lung biopsies are a safe and valuable alternative, with an 83% concordance rate with conventional autopsy [37]. Especially in times of new emerging diseases, like COVID-19, histopathological investigation is essential in understanding the pathogenesis of SARS-CoV-2 infection and thereby providing information leading to possible new therapeutic options."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T248","span":{"begin":111,"end":112},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T249","span":{"begin":281,"end":285},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T250","span":{"begin":281,"end":285},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T251","span":{"begin":299,"end":300},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"We acknowledge the limitations of this report and realize that due to limited sample size of pulmonary tissue, a sampling error in our histologic findings cannot be excluded. Although conventional autopsy might be the preferred postmortem examination, postmortem ultrasound guided lung biopsies are a safe and valuable alternative, with an 83% concordance rate with conventional autopsy [37]. Especially in times of new emerging diseases, like COVID-19, histopathological investigation is essential in understanding the pathogenesis of SARS-CoV-2 infection and thereby providing information leading to possible new therapeutic options."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T13","span":{"begin":520,"end":532},"obj":"http://purl.obolibrary.org/obo/GO_0009405"}],"text":"We acknowledge the limitations of this report and realize that due to limited sample size of pulmonary tissue, a sampling error in our histologic findings cannot be excluded. Although conventional autopsy might be the preferred postmortem examination, postmortem ultrasound guided lung biopsies are a safe and valuable alternative, with an 83% concordance rate with conventional autopsy [37]. Especially in times of new emerging diseases, like COVID-19, histopathological investigation is essential in understanding the pathogenesis of SARS-CoV-2 infection and thereby providing information leading to possible new therapeutic options."}

{"project":"LitCovid-sentences","denotations":[{"id":"T227","span":{"begin":0,"end":174},"obj":"Sentence"},{"id":"T228","span":{"begin":175,"end":392},"obj":"Sentence"},{"id":"T229","span":{"begin":393,"end":635},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"We acknowledge the limitations of this report and realize that due to limited sample size of pulmonary tissue, a sampling error in our histologic findings cannot be excluded. Although conventional autopsy might be the preferred postmortem examination, postmortem ultrasound guided lung biopsies are a safe and valuable alternative, with an 83% concordance rate with conventional autopsy [37]. Especially in times of new emerging diseases, like COVID-19, histopathological investigation is essential in understanding the pathogenesis of SARS-CoV-2 infection and thereby providing information leading to possible new therapeutic options."}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T428","span":{"begin":93,"end":102},"obj":"UBERON:0002048"},{"id":"T429","span":{"begin":103,"end":109},"obj":"UBERON:0000479"},{"id":"T430","span":{"begin":228,"end":238},"obj":"GO:0016265"},{"id":"T431","span":{"begin":252,"end":262},"obj":"GO:0016265"},{"id":"T432","span":{"begin":281,"end":285},"obj":"UBERON:0002048"},{"id":"T433","span":{"begin":444,"end":452},"obj":"SP_7"},{"id":"T434","span":{"begin":536,"end":546},"obj":"SP_7"},{"id":"T4174","span":{"begin":93,"end":102},"obj":"UBERON:0002048"},{"id":"T25225","span":{"begin":103,"end":109},"obj":"UBERON:0000479"},{"id":"T44391","span":{"begin":228,"end":238},"obj":"GO:0016265"},{"id":"T63222","span":{"begin":252,"end":262},"obj":"GO:0016265"},{"id":"T93307","span":{"begin":281,"end":285},"obj":"UBERON:0002048"},{"id":"T69193","span":{"begin":444,"end":452},"obj":"SP_7"},{"id":"T73836","span":{"begin":536,"end":546},"obj":"SP_7"}],"text":"We acknowledge the limitations of this report and realize that due to limited sample size of pulmonary tissue, a sampling error in our histologic findings cannot be excluded. Although conventional autopsy might be the preferred postmortem examination, postmortem ultrasound guided lung biopsies are a safe and valuable alternative, with an 83% concordance rate with conventional autopsy [37]. Especially in times of new emerging diseases, like COVID-19, histopathological investigation is essential in understanding the pathogenesis of SARS-CoV-2 infection and thereby providing information leading to possible new therapeutic options."}

{"project":"2_test","denotations":[{"id":"32674001-12070604-58631484","span":{"begin":388,"end":390},"obj":"12070604"}],"text":"We acknowledge the limitations of this report and realize that due to limited sample size of pulmonary tissue, a sampling error in our histologic findings cannot be excluded. Although conventional autopsy might be the preferred postmortem examination, postmortem ultrasound guided lung biopsies are a safe and valuable alternative, with an 83% concordance rate with conventional autopsy [37]. Especially in times of new emerging diseases, like COVID-19, histopathological investigation is essential in understanding the pathogenesis of SARS-CoV-2 infection and thereby providing information leading to possible new therapeutic options."}