PMC:7340597 / 20206-21011
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T115 | 37-41 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T116 | 104-112 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T117 | 128-140 | Body_part | denotes | fibroblastic | http://purl.org/sig/ont/fma/fma63877 |
| T118 | 141-147 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T119 | 485-493 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T120 | 530-543 | Body_part | denotes | blood vessels | http://purl.org/sig/ont/fma/fma63183 |
| T121 | 530-535 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T122 | 613-624 | Body_part | denotes | eosinophils | http://purl.org/sig/ont/fma/fma62861 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T69 | 37-41 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T70 | 141-147 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T71 | 253-260 | Body_part | denotes | exudate | http://purl.obolibrary.org/obo/UBERON_0007780 |
| T72 | 530-543 | Body_part | denotes | blood vessels | http://purl.obolibrary.org/obo/UBERON_0001981 |
| T73 | 530-535 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T74 | 536-543 | Body_part | denotes | vessels | http://purl.obolibrary.org/obo/UBERON_0000055 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 466 | 37-48 | Disease | denotes | lung injury | MESH:D055370 |
| 467 | 187-196 | Disease | denotes | pneumonia | MESH:D011014 |
| 468 | 355-364 | Disease | denotes | pneumonia | MESH:D011014 |
| 469 | 779-788 | Disease | denotes | pneumonia | MESH:D011014 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T165 | 42-48 | Disease | denotes | injury | http://purl.obolibrary.org/obo/MONDO_0021178 |
| T166 | 176-196 | Disease | denotes | organizing pneumonia | http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821 |
| T168 | 187-196 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T169 | 344-364 | Disease | denotes | organizing pneumonia | http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821 |
| T171 | 355-364 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T172 | 650-653 | Disease | denotes | PAS | http://purl.obolibrary.org/obo/MONDO_0004277 |
| T173 | 768-788 | Disease | denotes | organizing pneumonia | http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821 |
| T175 | 779-788 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T177 | 24-25 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T178 | 37-41 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T179 | 37-41 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T180 | 128-140 | http://purl.obolibrary.org/obo/CL_0000057 | denotes | fibroblastic |
| T181 | 176-186 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | organizing |
| T182 | 207-208 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T183 | 344-354 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | organizing |
| T184 | 397-398 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T185 | 530-543 | http://purl.obolibrary.org/obo/UBERON_0001981 | denotes | blood vessels |
| T186 | 530-543 | http://www.ebi.ac.uk/efo/EFO_0000817 | denotes | blood vessels |
| T187 | 589-598 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membranes |
| T188 | 768-778 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | organizing |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T109 | 650-653 | Chemical | denotes | PAS | http://purl.obolibrary.org/obo/CHEBI_27565 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T52 | 187-196 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T53 | 355-364 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T54 | 779-788 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T172 | 0-97 | Sentence | denotes | Biopsy specimens showed a pattern of lung injury, that was partially identical to that of case 1. |
| T173 | 98-197 | Sentence | denotes | Intra-alveolar depositions of fibroblastic tissue were found, consistent with organizing pneumonia. |
| T174 | 198-365 | Sentence | denotes | However, a predominant, diffuse component of fibrinous exudate in the alveoli was present, which was not the case in the aforementioned case with organizing pneumonia. |
| T175 | 366-500 | Sentence | denotes | Other histologic findings were a chronic inflammatory infiltrate, and mild interstitial changes, including widening of alveolar septa. |
| T176 | 501-563 | Sentence | denotes | Microthrombi in small septal blood vessels were also observed. |
| T177 | 564-638 | Sentence | denotes | Neither remnants hyaline membranes nor prominent eosinophils were present. |
| T178 | 639-685 | Sentence | denotes | Additional PAS-D stain did not show any fungi. |
| T179 | 686-805 | Sentence | denotes | The overall histologic pattern of this case was classified as acute fibrinous and organizing pneumonia (AFOP), Fig. 2D. |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T28835 | 37-41 | UBERON:0002048 | denotes | lung |
| T46508 | 104-112 | UBERON:0003215 | denotes | alveolar |
| T32950 | 128-140 | CL:0000057 | denotes | fibroblastic |
| T85905 | 141-147 | UBERON:0000479 | denotes | tissue |
| T72453 | 268-275 | UBERON:0003215 | denotes | alveoli |
| T83892 | 441-453 | UBERON:0005169 | denotes | interstitial |
| T50871 | 485-493 | UBERON:0003215 | denotes | alveolar |
| T65185 | 494-499 | UBERON:0003037 | denotes | septa |
| T3448 | 523-529 | UBERON:0003037 | denotes | septal |
| T58151 | 530-543 | UBERON:0001981 | denotes | blood vessels |
| T66331 | 589-598 | GO:0016020 | denotes | membranes |
| T96825 | 613-624 | CL:0000771 | denotes | eosinophils |
| T62230 | 679-684 | NCBITaxon:4751 | denotes | fungi |